# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 3.40e-17 2fbhA 146 2.29e-16 1jgsA 138 4.75e-16 a.4.5.28 66683 1z91A 147 1.03e-15 2fbiA 142 2.53e-15 1lnwA 147 3.77e-15 a.4.5.28 78104 2ethA 154 1.57e-14 1lj9A 144 2.34e-14 a.4.5.28 78035 2fbkA 181 6.87e-14 2fxaA 207 5.74e-11 1p4xA 250 1.31e-10 a.4.5.28,a.4.5.28 87784,87785 1on2A 142 1.88e-10 a.4.5.24,a.76.1.1 87103,87104 1ub9A 100 5.99e-09 a.4.5.28 99159 1z7uA 112 2.18e-08 1ulyA 192 4.11e-08 1sfxA 109 7.02e-08 a.4.5.50 105505 1r1tA 122 1.08e-07 a.4.5.5 104769 1mkmA 249 1.39e-07 a.4.5.33,d.110.2.2 79242,79243 1ixcA 294 7.04e-07 a.4.5.37,c.94.1.1 83764,83765 2fswA 107 7.07e-07 1r1uA 106 7.21e-07 a.4.5.5 104771 1tbxA 99 2.07e-06 a.4.5.48 106748 2g7uA 257 3.10e-06 2co5A 99 4.48e-06 2b0lA 102 1.23e-05 2f2eA 146 2.44e-05 1jhfA 202 2.46e-05 a.4.5.2,b.87.1.1 63057,63058 1sd4A 126 3.17e-05 a.4.5.39 105428 1b9mA 265 3.42e-05 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2cfxA 144 3.94e-05 1u2wA 122 5.66e-05 1z1dA 103 7.37e-05 2fu4A 83 1.04e-04 1mzbA 136 1.70e-04 a.4.5.42 91497 1je8A 82 2.85e-04 a.4.6.2 77108 1qzzA 374 3.40e-04 a.4.5.29,c.66.1.12 96719,96720 2h6bA 250 8.71e-04 1hw1A 239 1.19e-03 1e2xA a.4.5.6,a.78.1.1 16111,18441 1yg2A 179 1.45e-03 1hw5A 210 1.72e-03 2cgpA a.4.5.4,b.82.3.2 16098,28137 1r7jA 95 1.82e-03 a.4.5.49 104836 2dbbA 151 2.27e-03 2esnA 310 2.78e-03 1zljA 78 3.05e-03 1bjaA 95 4.70e-03 1bjaA a.4.5.9 16122 1y0uA 96 5.74e-03 2bgcA 238 5.86e-03 1xn7A 78 9.02e-03 1xd7A 145 1.16e-02 a.4.5.55 109566 1bia 321 1.21e-02 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2cg4A 152 1.30e-02 1fp2A 352 1.32e-02 1fpxA a.4.5.29,c.66.1.12 59941,59942 1j75A 67 1.62e-02 a.4.5.19 62673 1stzA 338 2.19e-02 a.4.5.51,d.110.2.3 106009,106010 1t6sA 162 2.88e-02 1hlvA 131 4.27e-02 a.4.1.7,a.4.1.7 65854,65855 1t98A 287 4.74e-02 1qbjA 81 5.07e-02 1qbjA a.4.5.19 16155 1fp1D 372 7.33e-02 1fpqA a.4.5.29,c.66.1.12 59939,59940 2cohA 202 7.33e-02 1mgtA 174 9.00e-02 1mgtA a.4.2.1,c.55.7.1 16078,33753 1in6A 334 9.02e-02 1hqcA a.4.5.11,c.37.1.20 62601,62602 1puoA 170 9.15e-02 a.101.1.1,a.101.1.1 95134,95135 1xsvA 113 1.05e-01 1fseA 74 1.48e-01 1fseA a.4.6.2 60000 1opc 110 1.53e-01 1opc a.4.6.1 16231 1e19A 314 1.57e-01 1b7bA c.73.1.1 34967 1in4A 334 1.79e-01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1utxA 66 2.24e-01 a.35.1.3 108034 1zkrA 153 2.88e-01 2tct 207 3.04e-01 2tct a.4.1.9,a.121.1.1 16063,19240 2csbA 519 3.23e-01 1x19A 359 4.49e-01 1twfF 155 5.05e-01 1sfuA 75 5.70e-01 a.4.5.19 105503 1zx4A 192 7.35e-01 1k78A 149 7.41e-01 a.4.1.5,a.4.1.5 68255,68256 1ev7A 317 7.79e-01 1ev7B c.52.1.9 33315 2choA 716 7.98e-01 1u5tA 233 8.23e-01 a.4.5.54,a.4.5.54 107684,107685 2chnA 716 8.49e-01 1gk9A 260 8.78e-01 d.153.1.2 65246 1zybA 232 9.22e-01 1lvaA 258 1.02e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1whzA 70 1.10e+00 1rr7A 129 1.20e+00 a.4.1.14 105075 1aisB 200 1.28e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 2a6cA 83 1.53e+00 2cw8A 537 1.54e+00 1gxqA 106 1.61e+00 a.4.6.1 70721 1g2hA 61 1.61e+00 1g2hA a.4.1.12 60224 1vgjA 184 1.64e+00 2ao9A 155 1.67e+00 2gyqA 175 1.79e+00 2aj6A 159 1.86e+00 1wi9A 72 1.95e+00 1res 43 2.24e+00 1ret a.4.1.2 16023 1b0nA 111 2.50e+00 1b0nA a.34.1.1,a.35.1.3 17001,17064 1pyoB 105 2.51e+00 1khyA 148 2.56e+00 a.174.1.1 77410 1kgsA 225 2.64e+00 a.4.6.1,c.23.1.1 68596,68597 1yqyA 523 2.99e+00 1yrcA 414 3.36e+00 1zk8A 183 3.61e+00 2b5aA 77 4.06e+00 1wyzA 242 4.39e+00 1jhgA 101 4.57e+00 1jhgA a.4.12.1 19009 1vmaA 306 4.58e+00 a.24.13.1,c.37.1.10 108887,108888 1lw7A 365 4.70e+00 c.26.1.3,c.37.1.1 74295,74296 1khbA 625 4.80e+00 c.91.1.1,c.109.1.1 68606,68607 2g19A 244 5.25e+00 1ys7A 233 5.26e+00 1mai 131 5.31e+00 1mai b.55.1.1 26951 1wj5A 120 5.36e+00 2g7gA 213 5.69e+00 2cujA 108 6.03e+00 1rhcA 330 6.16e+00 c.1.16.3 97468 2fcwA 109 6.26e+00 2fnaA 357 6.60e+00 1jftA 340 6.88e+00 a.35.1.5,c.93.1.1 66652,66653 2hbtA 247 7.02e+00 2cvdA 198 7.29e+00 1uxtA 501 7.54e+00 c.82.1.1 108125 2be4A 272 7.68e+00 1oltA 457 8.23e+00 c.1.28.2 93334 1t56A 216 9.03e+00 a.4.1.9,a.121.1.1 106428,106429 1i7dA 659 9.08e+00 1d6mA e.10.1.1 61886 1r69 69 9.32e+00 1r69 a.35.1.2 17028 1tzvA 142 1.01e+01 a.79.1.1 107526 1iyhA 198 1.01e+01 a.45.1.1,c.47.1.5 83790,83791 1ne9A 335 1.03e+01 d.108.1.4,d.108.1.4 91839,91840 1neq 74 1.04e+01 1neq a.35.1.2 17063 1b79A 119 1.05e+01 1b79A a.81.1.1 18451 1t7vA 278 1.09e+01 1uwzA 136 1.10e+01 c.97.1.1 108081 1u5tB 169 1.13e+01 a.4.5.54,a.4.5.54 107686,107687 1wdvA 152 1.15e+01 2g0dA 409 1.17e+01 1a8y 367 1.21e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1wf3A 301 1.27e+01 1f7cA 231 1.28e+01 1f7cA a.116.1.1 19107 1sgoA 139 1.32e+01 d.82.3.1 98857 1jpyA 137 1.34e+01 g.17.1.6 67065 1zt2B 212 1.41e+01 1vf1A 229 1.41e+01 1uhnA 189 1.42e+01 a.39.1.5 99399 1rzsA 61 1.45e+01 a.35.1.2 105139 1r71A 178 1.48e+01 a.4.14.1 104823 1fxxA 482 1.49e+01 1fxxA c.55.3.5 33726 2a33A 215 1.59e+01 1j6wA 175 1.59e+01 1j98A d.185.1.2 62663 1ly2A 130 1.59e+01 g.18.1.1,g.18.1.1 74335,74336 1rypH 205 1.62e+01 d.153.1.4 41876 1sauA 115 1.63e+01 1gtvA 214 1.64e+01 c.37.1.1 70537 1xmkA 79 1.65e+01 1qsmA 152 1.65e+01 1qsmA d.108.1.1 40808 2aaoA 166 1.71e+01 2auwA 170 1.72e+01 1wfxA 186 1.77e+01 2gwgA 350 1.84e+01 1tjvA 474 1.88e+01 a.127.1.1 107054 1fnnA 389 1.92e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1jr8A 117 1.97e+01 a.24.15.1 67115 1v7bA 185 2.00e+01 1x6iA 91 2.02e+01 1k7wA 468 2.05e+01 a.127.1.1 72130 1bjt 793 2.09e+01 1bjt e.11.1.1 43249 1wmuB 146 2.22e+01 a.1.1.2 109417 1ynfA 458 2.25e+01 2gc9A 179 2.31e+01 1ui5A 215 2.37e+01 a.4.1.9,a.121.1.1 107856,107857 1v74A 107 2.41e+01 d.243.1.1 100442 1it2A 146 2.41e+01 a.1.1.2 66365 1oshA 232 2.42e+01 a.123.1.1 93496 1qs1A 462 2.43e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1nb8A 353 2.43e+01 d.3.1.9 80385 1vr5A 547 2.44e+01 1pufB 73 2.48e+01 a.4.1.1 95132 2f2gA 221 2.49e+01 1ofcX 304 2.53e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1sgmA 191 2.54e+01 a.4.1.9,a.121.1.1 105537,105538 1uocA 289 2.58e+01 c.55.3.9 99686 1odoA 408 2.60e+01 a.104.1.1 92783 1or7A 194 2.64e+01 a.4.13.2,a.177.1.1 87332,87333 1dleA 298 2.68e+01 1dleA b.47.1.2 26312 2dc3A 193 2.71e+01 1bo4A 168 2.76e+01 1bo4A d.108.1.1 40798 1wbeA 209 2.77e+01 1t0qA 498 2.79e+01 a.25.1.2 106220 1u7kA 131 2.81e+01 1y7yA 74 2.81e+01 1j1vA 94 2.82e+01 a.4.12.2 83981 1wu7A 434 2.86e+01 1b5pA 385 2.86e+01 c.67.1.1 90403 1h3fA 432 2.92e+01 c.26.1.1,d.66.1.4 76631,76632 1txuA 273 2.97e+01 a.222.1.1 107439 1v2zA 111 2.98e+01 a.186.1.1 108300 1goiA 499 3.01e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1r0dA 206 3.02e+01 a.216.1.1 104715 1ro5A 201 3.06e+01 d.108.1.3 105023 1zs9A 261 3.08e+01 2cro 71 3.09e+01 1r69 a.35.1.2 17038 1v58A 241 3.10e+01 c.47.1.9,d.17.3.1 108371,108372 1wvqA 167 3.11e+01 1yf2A 425 3.13e+01 1m7kA 99 3.14e+01 a.7.7.1 74573 1orc 71 3.14e+01 1orc a.35.1.2 17054 1g4wR 383 3.16e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1q77A 138 3.16e+01 c.26.2.4 96023 2fq4A 192 3.18e+01 1jggA 60 3.24e+01 2hddA a.4.1.1 62950 2bmaA 470 3.25e+01 1oqcA 125 3.27e+01 a.24.15.1 87264 1lrv 244 3.29e+01 1lrv a.118.1.5 19146 1wpbA 172 3.32e+01 1zd7A 159 3.44e+01 1fy7A 278 3.47e+01 1fy7A d.108.1.1 40817 1nnvA 110 3.49e+01 d.17.7.1 92012 2akoA 251 3.55e+01 2h4pA 394 3.57e+01 1l0bA 229 3.60e+01 c.15.1.3,c.15.1.3 73391,73392 1x46A 150 3.82e+01 1wmwA 330 3.97e+01 1z67A 135 4.01e+01 2g3bA 208 4.03e+01 1tfzA 424 4.08e+01 d.32.1.3,d.32.1.3 106886,106887 1ng6A 148 4.10e+01 a.182.1.1 85670 2gm6A 208 4.12e+01 1woyA 500 4.15e+01 1g4mA 393 4.17e+01 b.1.18.11,b.1.18.11 65143,65144 1lmb3 92 4.22e+01 1lmb3 1q4rA 112 4.23e+01 d.58.4.4 95823 1hynP 379 4.28e+01 1hynP d.112.1.2 61408 1nv8A 284 4.30e+01 c.66.1.30 86224 1fmjA 351 4.32e+01 c.37.1.5 59879 1mw9X 592 4.32e+01 e.10.1.1 91480 1qwzA 235 4.33e+01 b.100.1.1 96510 1x9pA 523 4.35e+01 1m2tB 263 4.35e+01 b.42.2.1,b.42.2.1 84762,84763 2b5gA 171 4.35e+01 1qhlA 227 4.39e+01 1qhlA c.37.1.12 32382 1mr3F 181 4.47e+01 c.37.1.8 79422 1uzkA 162 4.47e+01 1ku1A 230 4.54e+01 a.118.3.1 72996 2a97A 439 4.57e+01 1u8bA 133 4.59e+01 1bf5A 545 4.70e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2h03A 291 4.72e+01 1ri5A 298 4.82e+01 c.66.1.34 97502 1z8oA 404 4.83e+01 1lfkA 398 4.85e+01 a.104.1.1 77926 1z02A 446 4.87e+01 1myt 146 4.89e+01 1a6m a.1.1.2 15207 1mml 265 4.95e+01 1mml e.8.1.2 43015 1squA 155 5.11e+01 d.252.1.1 98971 2ftuA 118 5.18e+01 1uzpA 162 5.19e+01 g.3.11.1,g.3.11.1,g.23.1.1 100232,100233,100234 2ganA 190 5.22e+01 1tfr 305 5.30e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1ucrA 78 5.30e+01 a.4.5.45 99188 1w5tA 412 5.32e+01 1bm9A 122 5.32e+01 1bm9A a.4.5.7 16116 1wwiA 148 5.35e+01 2f4iA 197 5.38e+01 1hdhA 536 5.43e+01 c.76.1.2 65805 1b5l 172 5.52e+01 1b5l a.26.1.3 16900 1rzhL 281 5.53e+01 f.26.1.1 98164 1u2zA 433 5.63e+01 c.66.1.31 107626 1umqA 81 5.63e+01 a.4.1.12 99625 1qysA 106 5.63e+01 k.41.1.1 96603 2bx9A 53 5.64e+01 1yf3A 259 5.65e+01 1l2hA 153 5.70e+01 b.42.1.2 77655 1swxA 209 5.73e+01 a.224.1.1 106075 1wi5A 119 5.77e+01 1b0b 142 5.77e+01 2fal a.1.1.2 15010 2d9bA 109 5.81e+01 1iv8A 720 5.88e+01 b.71.1.1,c.1.8.1 76842,76843 1k82A 268 5.88e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1b24A 188 5.88e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1r3dA 264 6.01e+01 1nigA 152 6.10e+01 a.25.2.1 85740 1adr 76 6.12e+01 1r69 a.35.1.2 17042 1ml4A 308 6.26e+01 c.78.1.1,c.78.1.1 79255,79256 1upvA 257 6.36e+01 1vcsA 102 6.41e+01 1b06A 210 6.65e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1p2fA 220 6.68e+01 a.4.6.1,c.23.1.1 87720,87721 1ctf 74 6.70e+01 1ctf d.45.1.1 38759 1fgkA 310 6.78e+01 1fgkA d.144.1.7 41693 1xdzA 240 6.78e+01 2a9iA 113 7.02e+01 1oa8A 133 7.06e+01 b.145.1.1 92698 3daaA 277 7.13e+01 1daaA e.17.1.1 43272 1z5zA 271 7.32e+01 1s6lA 212 7.37e+01 1b5eA 246 7.43e+01 1b5eA d.117.1.1 41056 2geyA 158 7.47e+01 2hdyA 440 7.59e+01 1jfbA 404 7.71e+01 a.104.1.1 66624 2beiA 170 7.74e+01 1ualA 274 7.88e+01 c.116.1.4 88383 1gwiA 411 7.90e+01 a.104.1.1 76364 1dpgA 485 7.91e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1lm4A 194 7.94e+01 d.167.1.1 84626 1wovA 250 7.98e+01 1z4eA 153 8.00e+01 1bc5A 269 8.07e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1v54E 109 8.14e+01 a.118.11.1 100326 1zetA 388 8.20e+01 1pb6A 212 8.25e+01 a.4.1.9,a.121.1.1 88017,88018 1wh2A 78 8.28e+01 1af7 274 8.31e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 2d7nA 93 8.34e+01 2hc1A 291 8.47e+01 1ud0A 113 8.50e+01 a.8.4.1 99198 1y9uA 323 8.65e+01 1x54A 434 8.70e+01 2fytA 340 8.75e+01 1x0hA 112 8.76e+01 1fjgQ 105 8.89e+01 1fjfQ b.40.4.5 25352 1tu7A 208 8.95e+01 1qwtA 255 8.99e+01 b.26.1.3 96501