# List of top-scoring protein chains for T0373.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 1.26e-22 1z91A 147 1.27e-21 2fbhA 146 2.04e-21 1jgsA 138 2.53e-20 a.4.5.28 66683 1lnwA 147 3.61e-20 a.4.5.28 78104 2fbkA 181 5.41e-20 2fbiA 142 1.06e-19 1s3jA 155 1.93e-19 a.4.5.28 98437 1lj9A 144 5.45e-19 a.4.5.28 78035 2ethA 154 7.28e-19 2fxaA 207 1.25e-12 1hsjA 487 2.66e-07 4mbp a.4.5.28,c.94.1.1 61237,61238 1p4xA 250 1.36e-06 a.4.5.28,a.4.5.28 87784,87785 1fx7A 230 1.98e-06 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1b1bA 140 2.86e-06 1bi0 a.4.5.24,a.76.1.1 16215,18421 2tdx 226 1.11e-05 1bi0 a.4.5.24,a.76.1.1 16201,18407 1g3tA 226 1.59e-05 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1on2A 142 2.13e-05 a.4.5.24,a.76.1.1 87103,87104 2ev0A 142 2.16e-05 2frhA 127 2.17e-05 1fzpB 123 2.17e-05 1fznD a.4.5.28 19008 1c0wA 225 2.35e-05 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dtr 226 2.49e-05 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2fnpA 124 2.77e-05 1g3yA 226 3.35e-05 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1f5tA 121 3.40e-05 1bi0 a.4.5.24,a.76.1.1 16203,18409 1fwzA 226 3.77e-05 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 1ub9A 100 4.31e-05 a.4.5.28 99159 1xcvA 139 5.86e-05 1p92A 226 6.80e-05 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 1ku9A 152 7.55e-05 a.4.5.36 77544 1sfxA 109 2.09e-04 a.4.5.50 105505 1mkmA 249 3.49e-04 a.4.5.33,d.110.2.2 79242,79243 1wwzA 159 3.55e-04 2aj6A 159 5.81e-03 2b0lA 102 6.12e-03 1okrA 123 6.37e-03 a.4.5.39 93269 2cfxA 144 9.27e-03 1ulyA 192 9.61e-03 1r22A 122 9.75e-03 a.4.5.5 104777 1sd6A 123 1.13e-02 a.4.5.39 98803 2dbbA 151 1.46e-02 2atrA 138 1.73e-02 2ge3A 170 2.15e-02 1bw6A 56 2.16e-02 1bw6A a.4.1.7 16052 1gheA 177 2.59e-02 d.108.1.1 76222 1r1tA 122 3.22e-02 a.4.5.5 104769 2g3aA 152 3.82e-02 1i1gA 141 4.02e-02 a.4.5.32,d.58.4.2 65982,65983 2ganA 190 5.04e-02 1hlvA 131 5.13e-02 a.4.1.7,a.4.1.7 65854,65855 1y9wA 140 5.45e-02 1yr0A 175 7.00e-02 1y9kA 157 8.41e-02 1ft9A 222 9.39e-02 1ft9A a.4.5.4,b.82.3.1 16107,28131 2g7uA 257 1.17e-01 1hw1A 239 1.25e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 1.25e-01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1dpuA 99 1.62e-01 1dpuA a.4.5.16 16150 1z1dA 103 1.64e-01 1n71A 180 1.76e-01 d.108.1.1 85370 1vkcA 158 1.77e-01 1b87A 181 1.80e-01 1b87A d.108.1.1 40797 2a4nA 182 1.83e-01 1cm0A 168 2.22e-01 1yghA d.108.1.1 40800 2cy2A 174 2.26e-01 5gcnA 166 2.28e-01 1yghA d.108.1.1 40807 1z4eA 153 2.36e-01 1qstA 160 2.39e-01 1yghA d.108.1.1 40804 1m1dA 163 2.44e-01 d.108.1.1 78397 2acjA 66 2.47e-01 1qsrA 162 2.49e-01 1yghA d.108.1.1 40805 2co5A 99 2.57e-01 1r1uA 106 2.64e-01 a.4.5.5 104771 1o3sA 200 2.70e-01 a.4.5.4,b.82.3.2 86609,86610 1u6mA 199 2.72e-01 1yvkA 163 2.74e-01 1je8A 82 2.84e-01 a.4.6.2 77108 1o5lA 213 2.85e-01 b.82.3.2 92506 1u2wA 122 3.04e-01 1sd4A 126 3.08e-01 a.4.5.39 105428 1j75A 67 3.11e-01 a.4.5.19 62673 1qgpA 77 3.47e-01 1qbjA a.4.5.19 16158 2fe7A 166 3.67e-01 1o3tA 200 4.00e-01 a.4.5.4,b.82.3.2 86611,86612 1xmaA 145 4.01e-01 1qbjA 81 4.09e-01 1qbjA a.4.5.19 16155 1hw5A 210 4.48e-01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1z7uA 112 4.52e-01 1z4rA 168 5.80e-01 1i6xA 209 6.05e-01 a.4.5.4,b.82.3.2 83673,83674 1ixcA 294 6.49e-01 a.4.5.37,c.94.1.1 83764,83765 1i5zA 209 6.75e-01 a.4.5.4,b.82.3.2 83669,83670 1cgpA 205 6.80e-01 a.4.5.4,b.82.3.2 16096,28135 2ae6A 166 6.92e-01 1g6nA 210 7.14e-01 2cgpA a.4.5.4,b.82.3.2 16100,28139 1q2yA 140 7.79e-01 d.108.1.1 95655 1qsoA 149 7.89e-01 1qsmA d.108.1.1 40812 1qsmA 152 7.95e-01 1qsmA d.108.1.1 40808 2beiA 170 8.61e-01 2fiwA 172 9.28e-01 1y7rA 133 1.03e+00 1yyvA 131 1.18e+00 1ruoA 209 1.20e+00 2cgpA a.4.5.4,b.82.3.2 16105,28144 1kecA 209 1.36e+00 d.153.1.2 90957 1i21A 159 1.40e+00 1i21A d.108.1.1 61549 1i12A 160 1.41e+00 1i21A d.108.1.1 61515 1i1dA 161 1.47e+00 1i21A d.108.1.1 61526 2h6bA 250 1.61e+00 1fy7A 278 1.61e+00 1fy7A d.108.1.1 40817 1ge9A 184 1.76e+00 1dd5A d.67.3.1 60463 1gm9A 209 1.80e+00 d.153.1.2 65304 1gm7A 209 1.81e+00 d.153.1.2 65302 1k7dA 209 1.84e+00 d.153.1.2 90946 1gk9A 260 1.85e+00 d.153.1.2 65246 1lccA 51 1.85e+00 1pru a.35.1.5 17110 1mjaA 278 1.87e+00 d.108.1.1 79191 1lqc 56 2.07e+00 1pru a.35.1.5 17109 1mjbA 278 2.11e+00 d.108.1.1 79192 1yghA 164 2.26e+00 1yghA d.108.1.1 40802 1cjgA 62 2.32e+00 1pru a.35.1.5 17112 1l1mA 62 2.36e+00 a.35.1.5 73474 1mk4A 157 2.38e+00 d.108.1.1 84979 2bjcA 62 2.46e+00 1utxA 66 2.52e+00 a.35.1.3 108034 1mj9A 278 2.54e+00 d.108.1.1 79190 1s3zA 165 2.55e+00 d.108.1.1 105250 2b5gA 171 2.78e+00 2g3tA 179 2.80e+00 1xebA 150 2.83e+00 2fxfA 170 2.86e+00 2b3uA 171 2.89e+00 2b5gB 171 3.02e+00 1t6sA 162 3.08e+00 1rxtA 496 3.32e+00 1vhsA 175 3.47e+00 d.108.1.1 100698 2c27A 315 3.69e+00 1p0hA 318 3.69e+00 d.108.1.1 93866 2fl4A 149 3.80e+00 1q1hA 110 3.99e+00 a.4.5.41 95580 1cp9A 205 4.56e+00 1ajqA d.153.1.2 41849 1tiqA 180 4.81e+00 d.108.1.1 107010 1vgjA 184 4.87e+00 1xnpA 202 5.14e+00 2f2eA 146 5.55e+00 1yqyA 523 5.77e+00 1xn7A 78 6.29e+00 1zauA 328 6.49e+00 1pwuA 776 6.61e+00 d.92.1.14,d.92.1.14,d.166.1.1 95244,95245,95246 1tbxA 99 6.86e+00 a.4.5.48 106748 1v4rA 102 6.92e+00 1j7nA 776 7.77e+00 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2fswA 107 7.80e+00 1olmA 403 7.93e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1a04A 215 8.32e+00 1a04A a.4.6.2,c.23.1.1 16234,31089 1olmE 403 8.43e+00 a.5.3.1,b.132.1.1,c.13.1.1 104014,104015,104016 1z6fA 363 8.81e+00 1q2lA 939 8.99e+00 1nj4A 363 9.52e+00 b.105.1.1,e.3.1.1 80545,80546 1ri7A 171 9.82e+00 a.4.5.32,d.58.4.2 97504,97505 1iykA 392 1.03e+01 d.108.1.2,d.108.1.2 76958,76959 1yvoA 172 1.05e+01 2bl1A 172 1.16e+01 1z05A 429 1.26e+01 1pru 56 1.28e+01 1pru a.35.1.5 17104 1z6rA 406 1.33e+01 1q4rA 112 1.42e+01 d.58.4.4 95823 1g6uA 48 1.46e+01 1g6uA k.9.1.1 46425 1mzbA 136 1.55e+01 a.4.5.42 91497 1z0hA 438 1.66e+01 1o7lA 262 1.71e+01 a.4.5.8,b.40.6.2,b.40.6.2 81147,81148,81149 1b9mA 265 1.72e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1r57A 102 1.72e+01 d.108.1.1 97080 1d2pA 373 1.80e+01 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1d2oA 187 1.83e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1zljA 78 1.86e+01 1tw3A 360 1.87e+01 a.4.5.29,c.66.1.12 107373,107374 1sgoA 139 1.93e+01 d.82.3.1 98857 1bo4A 168 1.97e+01 1bo4A d.108.1.1 40798 1n5dA 288 1.97e+01 c.2.1.2 80030 1ev7A 317 1.98e+01 1ev7B c.52.1.9 33315 2mysB 166 2.01e+01 1wdcB a.39.1.5 17308 1i1sA 96 2.01e+01 1bjaA a.4.5.9 16124 2givA 295 2.02e+01 1bjaA 95 2.04e+01 1bjaA a.4.5.9 16122 2hbtA 247 2.07e+01 2cg4A 152 2.08e+01 2fu4A 83 2.09e+01 2g1mA 246 2.15e+01 2g19A 244 2.15e+01 1f89A 291 2.17e+01 d.160.1.1 64988 1p6rA 82 2.23e+01 a.4.5.39 94187 1urvA 190 2.54e+01 2b5aA 77 2.64e+01 2fcwA 109 2.65e+01 2ftuA 118 2.68e+01 2b5eA 504 2.68e+01 1wdvA 152 2.68e+01 2fiaA 162 2.73e+01 1zlkA 95 2.79e+01 1zx4A 192 2.81e+01 1s7oA 113 3.11e+01 a.4.13.3 105354 1olpA 370 3.17e+01 a.124.1.1,b.12.1.3 93320,93321 1uf2C 421 3.17e+01 a.115.1.3,b.19.1.1 99291,99292 2fztA 79 3.21e+01 2eshA 118 3.28e+01 1z1mA 119 3.37e+01 1so8A 261 3.39e+01 c.2.1.2 98940 1wucA 250 3.45e+01 1qxyA 252 3.46e+01 d.127.1.1 96565 2dc3A 193 3.52e+01 1vpe 398 3.57e+01 16pk c.86.1.1 35453 2gdbA 103 3.68e+01 1xmtA 103 3.68e+01 1efaA 333 3.90e+01 1tlfA a.35.1.5,c.93.1.1 17106,35691 1jyeA 349 3.97e+01 c.93.1.1 67455 1jyfA 349 3.98e+01 c.93.1.1 67456 1z67A 135 4.02e+01 2h6cA 232 4.05e+01 1t4eA 96 4.15e+01 1ygmA 118 4.32e+01 1c8bA 371 4.40e+01 1c8bA c.56.1.2 59082 1lbiA 360 4.41e+01 1tlfA c.93.1.1 35694 1qzzA 374 4.42e+01 a.4.5.29,c.66.1.12 96719,96720 1puzA 82 4.44e+01 a.218.1.1 104320 1bob 320 4.45e+01 1bob d.108.1.1 40816 1t8cA 143 4.46e+01 2fckA 181 4.49e+01 1m6bA 621 4.71e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 74521,74522,74523,74524 1pg6A 243 4.71e+01 b.82.5.2 94673 1k78A 149 4.72e+01 a.4.1.5,a.4.1.5 68255,68256 1r4fA 339 4.73e+01 c.70.1.1 96994 1kicA 339 4.78e+01 c.70.1.1 72510 1hozA 339 4.79e+01 c.70.1.1 65898 1xnfA 275 4.83e+01 2a6cA 83 4.94e+01 1vmaA 306 5.14e+01 a.24.13.1,c.37.1.10 108887,108888 1u7tA 261 5.39e+01 1o9nA 414 5.50e+01 c.117.1.1 92677 1obiA 414 5.68e+01 c.117.1.1 92755 1t4fM 110 5.73e+01 1o9pA 414 5.74e+01 c.117.1.1 92681 1objA 414 5.74e+01 c.117.1.1 92757 1oblA 414 5.74e+01 c.117.1.1 92761 1h1yA 228 5.75e+01 c.1.2.2 76506 1obkA 414 5.78e+01 c.117.1.1 92759 1o9qA 414 5.82e+01 c.117.1.1 92683 2dfkA 402 5.95e+01 2azeA 155 6.07e+01 2mhr 118 6.08e+01 2mhr a.24.4.1 16581 1j1nA 492 6.31e+01 c.94.1.1 83978 1uthA 315 6.36e+01 c.94.1.1 108032 1ockA 412 6.38e+01 c.117.1.1 86802 1ka2A 499 6.54e+01 d.92.1.5 77305 1dgsA 667 6.59e+01 1dgsA a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1ud0A 113 6.61e+01 a.8.4.1 99198 1utbA 315 6.64e+01 c.94.1.1 108030 1a7e 118 6.66e+01 2mhr a.24.4.1 16583 1utbB 315 6.72e+01 c.94.1.1 108031 1nyaA 176 6.78e+01 a.39.1.5 92335 1uthB 315 7.21e+01 c.94.1.1 108033 2auwA 170 7.64e+01 2hd1A 326 7.65e+01 1xx6A 191 7.66e+01 1zuwA 272 7.76e+01 1x81B 397 7.82e+01 2g0dA 409 7.86e+01 1sqhA 312 8.14e+01 d.108.1.5 98966 1wmzA 140 8.19e+01 d.169.1.1 109422 2bddA 182 8.25e+01 1jhgA 101 8.31e+01 1jhgA a.4.12.1 19009 1ft2B 401 8.32e+01 1ft1B a.102.4.3 18871 1h3gA 601 8.38e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1nl4B 401 8.52e+01 a.102.4.3 80618 1ni1B 402 8.52e+01 a.102.4.3 91889 1ycrA 109 8.54e+01 1ycqA a.42.1.1 17420 1odhA 174 8.57e+01 d.239.1.1 86850 1b48A 221 8.77e+01 1pgtA a.45.1.1,c.47.1.5 17703,32997 1gukA 222 8.86e+01 1pgtA a.45.1.1,c.47.1.5 17705,32999 1pdnC 128 8.92e+01 6paxA a.4.1.5 16047 2euiA 153 8.97e+01 1vmbA 140 9.00e+01