# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 1.34e-20 1z91A 147 1.43e-19 2fbhA 146 1.57e-19 2fbiA 142 1.67e-18 1jgsA 138 2.18e-18 a.4.5.28 66683 1lj9A 144 3.93e-18 a.4.5.28 78035 1s3jA 155 9.70e-18 a.4.5.28 98437 1lnwA 147 1.07e-17 a.4.5.28 78104 2ethA 154 1.01e-16 2fbkA 181 4.23e-16 2fxaA 207 1.35e-11 1p4xA 250 1.19e-09 a.4.5.28,a.4.5.28 87784,87785 1on2A 142 1.35e-06 a.4.5.24,a.76.1.1 87103,87104 1ub9A 100 1.69e-06 a.4.5.28 99159 1wwzA 159 1.34e-05 2dtr 226 2.63e-05 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1mkmA 249 1.22e-04 a.4.5.33,d.110.2.2 79242,79243 1sfxA 109 2.00e-04 a.4.5.50 105505 1okrA 123 3.04e-04 a.4.5.39 93269 1ulyA 192 9.79e-04 2ge3A 170 1.06e-03 2aj6A 159 1.90e-03 1z7uA 112 4.00e-03 1xmaA 145 5.95e-03 1dpuA 99 6.12e-03 1dpuA a.4.5.16 16150 2atrA 138 6.58e-03 2b0lA 102 6.73e-03 1yyvA 131 7.27e-03 1z1dA 103 8.55e-03 1sd4A 126 8.81e-03 a.4.5.39 105428 1tbxA 99 1.11e-02 a.4.5.48 106748 1gheA 177 1.20e-02 d.108.1.1 76222 1yr0A 175 1.23e-02 1r1tA 122 1.26e-02 a.4.5.5 104769 1tiqA 180 1.27e-02 d.108.1.1 107010 2cfxA 144 1.35e-02 1z4eA 153 1.78e-02 1smtA 122 1.85e-02 1smtA a.4.5.5 16109 1n71A 180 2.78e-02 d.108.1.1 85370 1qsmA 152 2.80e-02 1qsmA d.108.1.1 40808 2a4nA 182 3.17e-02 1b87A 181 3.27e-02 1b87A d.108.1.1 40797 2co5A 99 3.45e-02 1qsoA 149 3.56e-02 1qsmA d.108.1.1 40812 1y9kA 157 3.86e-02 2g7uA 257 4.55e-02 1qstA 160 4.79e-02 1yghA d.108.1.1 40804 1q2yA 140 4.84e-02 d.108.1.1 95655 1u2wA 122 5.00e-02 2h6bA 250 5.57e-02 1xebA 150 5.58e-02 1hw5A 210 5.75e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1r1uA 106 5.92e-02 a.4.5.5 104771 2cy2A 174 6.46e-02 1z4rA 168 8.45e-02 1yvkA 163 1.06e-01 1i6xA 209 1.07e-01 a.4.5.4,b.82.3.2 83673,83674 2ganA 190 1.09e-01 2beiA 170 1.16e-01 1s3zA 165 1.16e-01 d.108.1.1 105250 1bo4A 168 1.18e-01 1bo4A d.108.1.1 40798 1yghA 164 1.23e-01 1yghA d.108.1.1 40802 1ixcA 294 1.33e-01 a.4.5.37,c.94.1.1 83764,83765 2f2eA 146 1.33e-01 2b5gA 171 1.87e-01 1i1dA 161 2.26e-01 1i21A d.108.1.1 61526 1i12A 160 2.45e-01 1i21A d.108.1.1 61515 1p0hA 318 2.57e-01 d.108.1.1 93866 2ae6A 166 2.69e-01 1q1hA 110 3.10e-01 a.4.5.41 95580 1je8A 82 3.28e-01 a.4.6.2 77108 1xn7A 78 3.34e-01 1j75A 67 3.35e-01 a.4.5.19 62673 2fckA 181 3.70e-01 2eshA 118 3.93e-01 1bjaA 95 4.38e-01 1bjaA a.4.5.9 16122 2fu4A 83 4.48e-01 1qbjA 81 4.73e-01 1qbjA a.4.5.19 16155 2fe7A 166 5.14e-01 1mk4A 157 5.24e-01 d.108.1.1 84979 2dbbA 151 5.36e-01 1qzzA 374 5.76e-01 a.4.5.29,c.66.1.12 96719,96720 1mzbA 136 6.08e-01 a.4.5.42 91497 2bjcA 62 6.42e-01 2givA 295 7.12e-01 1b9mA 265 7.29e-01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2c27A 315 8.81e-01 1y7rA 133 9.15e-01 1hw1A 239 9.35e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1vkcA 158 1.04e+00 1cjgA 62 1.04e+00 1pru a.35.1.5 17112 1fy7A 278 1.06e+00 1fy7A d.108.1.1 40817 1yx0A 159 1.14e+00 2fswA 107 1.33e+00 1j7nA 776 1.50e+00 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1ev7A 317 1.61e+00 1ev7B c.52.1.9 33315 1yqyA 523 1.64e+00 1lm4A 194 1.87e+00 d.167.1.1 84626 1e3aA 260 2.06e+00 1ajqA d.153.1.2 41838 1zkrA 153 2.07e+00 1vhsA 175 2.28e+00 d.108.1.1 100698 1r7jA 95 2.30e+00 a.4.5.49 104836 1nslA 184 2.34e+00 d.108.1.1 86137 1gk9A 260 2.63e+00 d.153.1.2 65246 1puzA 82 2.74e+00 a.218.1.1 104320 1xnpA 202 2.87e+00 1hlvA 131 2.95e+00 a.4.1.7,a.4.1.7 65854,65855 1utxA 66 2.97e+00 a.35.1.3 108034 1o6uA 403 2.99e+00 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1vdxA 184 3.23e+00 1vgjA 184 3.39e+00 1jhfA 202 3.63e+00 a.4.5.2,b.87.1.1 63057,63058 1sfuA 75 3.65e+00 a.4.5.19 105503 1yvoA 172 3.83e+00 2bl1A 172 4.02e+00 2g3aA 152 4.21e+00 2fl4A 149 4.35e+00 1olmA 403 4.47e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1u6mA 199 5.00e+00 1a04A 215 5.15e+00 1a04A a.4.6.2,c.23.1.1 16234,31089 1on0A 158 5.35e+00 d.108.1.1 87095 2bgcA 238 5.42e+00 2fcwA 109 5.46e+00 1uf2C 421 5.72e+00 a.115.1.3,b.19.1.1 99291,99292 1zybA 232 6.03e+00 1s7kA 182 6.50e+00 1zljA 78 6.61e+00 1xszA 356 7.35e+00 2fztA 79 7.40e+00 1cdzA 96 7.52e+00 1cdzA c.15.1.1 30925 1j5yA 187 7.75e+00 a.4.5.1,d.94.2.1 71592,71593 2cvxA 888 7.89e+00 2g42A 79 8.07e+00 1f7cA 231 8.56e+00 1f7cA a.116.1.1 19107 1y9wA 140 8.66e+00 1bob 320 9.52e+00 1bob d.108.1.1 40816 2bv1A 145 9.57e+00 1z90A 469 9.62e+00 2f2aC 100 1.05e+01 1opc 110 1.17e+01 1opc a.4.6.1 16231 1yreA 197 1.24e+01 6paxA 133 1.26e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1qxyA 252 1.28e+01 d.127.1.1 96565 1g6uA 48 1.28e+01 1g6uA k.9.1.1 46425 1yg2A 179 1.29e+01 1mai 131 1.34e+01 1mai b.55.1.1 26951 1omiA 248 1.44e+01 b.82.3.3,a.4.5.4 87079,87080 2azeA 155 1.48e+01 1vrpA 381 1.53e+01 1k78A 149 1.60e+01 a.4.1.5,a.4.1.5 68255,68256 1puoA 170 1.60e+01 a.101.1.1,a.101.1.1 95134,95135 1ytw 306 1.64e+01 1ytw c.45.1.2 32689 1pru 56 1.74e+01 1pru a.35.1.5 17104 1z67A 135 1.75e+01 1zs9A 261 1.82e+01 1ys7A 233 1.85e+01 1vmaA 306 1.91e+01 a.24.13.1,c.37.1.10 108887,108888 1dcoA 104 2.00e+01 1dcpA d.74.1.1 39680 2acjA 66 2.01e+01 1b0nA 111 2.07e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1gl2D 65 2.08e+01 h.1.15.1 65281 1sauA 115 2.09e+01 1hy0A 466 2.11e+01 1auwA a.127.1.1 61392 1v2zA 111 2.26e+01 a.186.1.1 108300 1n1bA 549 2.26e+01 a.102.4.1,a.128.1.3 79799,79800 2ftuA 118 2.42e+01 2b5aA 77 2.46e+01 1ri7A 171 2.47e+01 a.4.5.32,d.58.4.2 97504,97505 1qusA 322 2.57e+01 1ltm d.2.1.6 36991 1t98A 287 2.65e+01 1lyvA 306 2.74e+01 c.45.1.2 74348 1ldjA 760 2.79e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1uhnA 189 2.81e+01 a.39.1.5 99399 2bswA 146 2.83e+01 2ayvA 166 2.86e+01 1iicA 422 2.89e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1xmkA 79 2.92e+01 2cg4A 152 2.97e+01 1ctf 74 3.00e+01 1ctf d.45.1.1 38759 2d4pA 141 3.03e+01 1z3eA 132 3.03e+01 1xx6A 191 3.05e+01 2bx9A 53 3.07e+01 2fsaA 174 3.11e+01 2gqrA 237 3.24e+01 2a6cA 83 3.26e+01 2cohA 202 3.28e+01 1bs0A 384 3.31e+01 1bs0A c.67.1.4 34490 1xd7A 145 3.34e+01 a.4.5.55 109566 2g19A 244 3.36e+01 1xwoA 465 3.40e+01 1n5dA 288 3.42e+01 c.2.1.2 80030 1hu4A 288 3.46e+01 1hu4A 1tjvA 474 3.50e+01 a.127.1.1 107054 1k7wA 468 3.53e+01 a.127.1.1 72130 1ml4A 308 3.68e+01 c.78.1.1,c.78.1.1 79255,79256 1gskA 513 3.68e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2hf2A 283 3.71e+01 1eguA 731 3.74e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2bm8A 236 3.76e+01 1n7oA 721 3.79e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1vf1A 229 3.80e+01 2ccqA 99 3.89e+01 1xmtA 103 3.95e+01 1aisB 200 3.97e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1whuA 104 3.99e+01 2gdzA 267 4.08e+01 1i50F 155 4.17e+01 a.143.1.2 61760 1twfF 155 4.18e+01 1j7qA 86 4.19e+01 1j7rA a.39.1.5 62700 1xsqA 168 4.20e+01 1yf2A 425 4.21e+01 1m8uA 173 4.27e+01 b.11.1.1,b.11.1.1 91233,91234 2bo3A 94 4.33e+01 1g24A 211 4.54e+01 1g24A d.166.1.1 42270 1ufzA 83 4.60e+01 a.5.9.1 107821 1zirA 173 4.64e+01 1q4rA 112 4.68e+01 d.58.4.4 95823 1nv8A 284 4.68e+01 c.66.1.30 86224 1vs0A 310 4.82e+01 1r4yA 136 4.82e+01 d.1.1.3 97056 1tzvA 142 4.85e+01 a.79.1.1 107526 2hbtA 247 5.04e+01 1dpgA 485 5.04e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1lvaA 258 5.13e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1gtvA 214 5.24e+01 c.37.1.1 70537 1y7yA 74 5.26e+01 1odfA 290 5.30e+01 c.37.1.6 92782 2booA 247 5.36e+01 1b24A 188 5.36e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1wi9A 72 5.40e+01 2g0dA 409 5.41e+01 1j8yF 297 5.56e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2esnA 310 5.63e+01 1s7oA 113 5.70e+01 a.4.13.3 105354 1ne9A 335 5.71e+01 d.108.1.4,d.108.1.4 91839,91840 1jr8A 117 5.72e+01 a.24.15.1 67115 1m4iA 181 5.73e+01 d.108.1.1 74457 1j8mF 297 5.75e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1aqzA 149 5.83e+01 1aqzA d.1.1.3 36238 1zcxA 178 5.91e+01 1u7kA 131 5.94e+01 1sqhA 312 6.00e+01 d.108.1.5 98966 1fjgM 126 6.07e+01 1fjfM a.156.1.1 16293 1wmqA 147 6.23e+01 1qnxA 209 6.27e+01 1qnxA d.111.1.1 40914 1f89A 291 6.28e+01 d.160.1.1 64988 1whrA 124 6.34e+01 2ex0A 399 6.43e+01 1tbmA 326 6.46e+01 a.211.1.2 106744 2a2pA 129 6.57e+01 2cx1A 187 6.58e+01 2bitX 165 6.58e+01 1mjhA 162 6.62e+01 1mjhA c.26.2.4 31639 1urvA 190 6.69e+01 1ut0A 190 6.69e+01 a.1.1.2 108012 1b06A 210 6.70e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1f2tB 148 6.73e+01 1f2tB 1i0aA 466 6.74e+01 1auwA a.127.1.1 61479 1ud0A 113 6.83e+01 a.8.4.1 99198 1t5yA 190 6.83e+01 b.122.1.1,d.17.6.3 106495,106496 1rykA 69 6.83e+01 a.60.11.1 98105 2dc3A 193 6.85e+01 1rt8A 513 6.86e+01 a.40.1.1 105095 1cr1A 296 6.92e+01 1cr1A c.37.1.11 32286 1b5l 172 7.01e+01 1b5l a.26.1.3 16900 1ygmA 118 7.02e+01 2cfeA 162 7.05e+01 1otfA 62 7.06e+01 1otfA d.80.1.1 39820 1sedA 117 7.18e+01 a.219.1.1 105449 1amm 174 7.18e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1gsa 316 7.20e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ca1 370 7.28e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1p7gA 222 7.32e+01 a.2.11.1,d.44.1.1 94223,94224 1qhfA 240 7.47e+01 1qhfA c.60.1.1 33960 1pg5A 299 7.50e+01 c.78.1.1,c.78.1.1 104146,104147 1zs7A 190 7.53e+01 1ee4A 423 7.56e+01 1ee4A a.118.1.1 19128 1r89A 437 7.60e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2a1xA 308 7.62e+01 1r31A 428 7.62e+01 d.58.20.1,d.179.1.1 96897,96898 1repC 251 7.65e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1wurA 220 7.72e+01 1idk 359 7.79e+01 1qcxA b.80.1.2 28025 1bsmA 201 7.83e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1ff9A 450 7.87e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1svjA 156 7.90e+01 d.220.1.1 106049 2cro 71 8.00e+01 1r69 a.35.1.2 17038 1khyA 148 8.04e+01 a.174.1.1 77410 1v54B 227 8.10e+01 b.6.1.2,f.17.2.1 100322,100323 1m12A 84 8.15e+01 a.64.1.1 84745 1h4aX 173 8.16e+01 b.11.1.1,b.11.1.1 83479,83480 2etdA 171 8.19e+01 1ipaA 274 8.30e+01 c.116.1.1,d.79.3.3 71254,71255 1ockA 412 8.32e+01 c.117.1.1 86802 2bmaA 470 8.42e+01 1wa5B 530 8.44e+01 1w1wE 121 8.45e+01 2dcnA 311 8.46e+01 1nqkA 381 8.54e+01 c.1.16.4 92050 1khoA 370 8.55e+01 a.124.1.1,b.12.1.3 72489,72490 1wyuB 474 8.59e+01 1sseB 86 8.64e+01 1nyhA 166 8.65e+01 h.1.23.1 86403 2fu0A 160 8.67e+01 1aszB 490 8.69e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1c7qA 445 8.70e+01 2pgi c.80.1.2 35307 2a9kB 223 8.82e+01 1eqfA 280 8.99e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 2hrvA 142 9.00e+01 2hrvA b.47.1.4 26429