# TARGET T0373 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0373.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1386 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.020 0.007 0.009 0.303 0.649 2 P 0.024 0.105 0.006 0.016 0.173 0.675 3 T 0.028 0.043 0.008 0.038 0.256 0.627 4 N 0.009 0.016 0.008 0.042 0.408 0.517 5 Q 0.002 0.006 0.056 0.539 0.305 0.093 6 D 0.001 0.002 0.058 0.716 0.167 0.058 7 L 0.001 0.001 0.025 0.845 0.085 0.043 8 Q 0.001 0.001 0.006 0.963 0.016 0.013 9 L 0.001 0.001 0.002 0.993 0.002 0.003 10 A 0.001 0.001 0.002 0.995 0.002 0.001 11 A 0.001 0.001 0.001 0.996 0.002 0.001 12 H 0.001 0.001 0.001 0.995 0.002 0.002 13 L 0.001 0.001 0.001 0.997 0.001 0.001 14 R 0.001 0.001 0.001 0.997 0.001 0.002 15 S 0.001 0.001 0.001 0.997 0.001 0.002 16 Q 0.001 0.001 0.001 0.995 0.002 0.003 17 V 0.001 0.001 0.001 0.994 0.002 0.004 18 T 0.001 0.001 0.001 0.987 0.005 0.007 19 T 0.001 0.001 0.001 0.987 0.006 0.006 20 L 0.001 0.001 0.001 0.980 0.009 0.009 21 T 0.001 0.001 0.003 0.958 0.016 0.023 22 R 0.001 0.001 0.002 0.953 0.021 0.023 23 R 0.001 0.001 0.002 0.948 0.018 0.031 24 L 0.001 0.001 0.002 0.924 0.022 0.049 25 R 0.001 0.001 0.005 0.897 0.041 0.056 26 R 0.001 0.001 0.006 0.919 0.040 0.034 27 E 0.001 0.001 0.009 0.935 0.037 0.017 28 A 0.001 0.001 0.018 0.914 0.045 0.022 29 Q 0.001 0.001 0.061 0.820 0.084 0.033 30 A 0.001 0.001 0.100 0.750 0.105 0.044 31 D 0.002 0.001 0.060 0.558 0.184 0.195 32 P 0.001 0.001 0.004 0.009 0.120 0.864 33 V 0.004 0.006 0.001 0.003 0.082 0.904 34 Q 0.003 0.004 0.001 0.006 0.076 0.910 35 F 0.001 0.001 0.013 0.909 0.048 0.029 36 S 0.001 0.001 0.012 0.959 0.021 0.006 37 Q 0.001 0.001 0.004 0.991 0.004 0.001 38 L 0.001 0.001 0.001 0.998 0.001 0.001 39 V 0.001 0.001 0.001 0.999 0.001 0.001 40 V 0.001 0.001 0.001 0.999 0.001 0.001 41 L 0.001 0.001 0.001 0.999 0.001 0.001 42 G 0.001 0.001 0.001 0.999 0.001 0.001 43 A 0.001 0.001 0.001 0.999 0.001 0.001 44 I 0.001 0.001 0.001 0.996 0.002 0.001 45 D 0.001 0.001 0.005 0.984 0.006 0.004 46 R 0.001 0.001 0.009 0.909 0.044 0.037 47 L 0.001 0.002 0.021 0.668 0.160 0.148 48 G 0.001 0.003 0.035 0.053 0.579 0.329 49 G 0.002 0.001 0.033 0.011 0.687 0.266 50 D 0.009 0.004 0.043 0.008 0.604 0.332 51 V 0.076 0.039 0.010 0.006 0.410 0.459 52 T 0.117 0.035 0.002 0.007 0.084 0.755 53 P 0.011 0.001 0.026 0.885 0.052 0.024 54 S 0.001 0.001 0.016 0.955 0.025 0.003 55 E 0.002 0.001 0.009 0.965 0.022 0.002 56 L 0.002 0.001 0.004 0.972 0.018 0.002 57 A 0.002 0.001 0.004 0.975 0.015 0.004 58 A 0.002 0.001 0.013 0.958 0.022 0.005 59 A 0.001 0.001 0.016 0.949 0.023 0.011 60 E 0.001 0.001 0.012 0.859 0.040 0.088 61 R 0.001 0.001 0.002 0.024 0.071 0.900 62 M 0.007 0.007 0.002 0.009 0.103 0.873 63 R 0.022 0.017 0.005 0.019 0.245 0.692 64 S 0.007 0.004 0.099 0.500 0.270 0.119 65 S 0.005 0.002 0.117 0.669 0.141 0.065 66 N 0.002 0.002 0.076 0.866 0.043 0.011 67 L 0.001 0.001 0.008 0.979 0.005 0.007 68 A 0.001 0.001 0.002 0.996 0.001 0.001 69 A 0.001 0.001 0.001 0.998 0.001 0.001 70 L 0.001 0.001 0.001 0.998 0.001 0.001 71 L 0.001 0.001 0.001 0.999 0.001 0.001 72 R 0.001 0.001 0.001 0.999 0.001 0.001 73 E 0.001 0.001 0.001 0.997 0.002 0.001 74 L 0.001 0.001 0.002 0.993 0.004 0.001 75 E 0.001 0.001 0.004 0.988 0.006 0.002 76 R 0.001 0.001 0.004 0.967 0.016 0.012 77 G 0.004 0.001 0.007 0.773 0.068 0.148 78 G 0.008 0.001 0.001 0.013 0.103 0.875 79 L 0.203 0.011 0.002 0.006 0.120 0.657 80 I 0.791 0.013 0.002 0.003 0.051 0.140 81 V 0.901 0.008 0.004 0.002 0.029 0.057 82 R 0.927 0.004 0.003 0.001 0.015 0.052 83 H 0.876 0.006 0.004 0.001 0.035 0.078 84 A 0.720 0.025 0.003 0.001 0.070 0.182 85 D 0.258 0.017 0.003 0.002 0.351 0.369 86 P 0.012 0.001 0.265 0.078 0.601 0.042 87 Q 0.011 0.002 0.252 0.078 0.617 0.040 88 D 0.028 0.006 0.247 0.066 0.615 0.038 89 G 0.081 0.005 0.041 0.071 0.377 0.426 90 R 0.446 0.027 0.015 0.034 0.170 0.307 91 R 0.765 0.010 0.011 0.017 0.083 0.114 92 T 0.901 0.001 0.003 0.006 0.030 0.058 93 R 0.940 0.004 0.002 0.006 0.016 0.031 94 V 0.935 0.002 0.002 0.005 0.017 0.040 95 S 0.909 0.003 0.001 0.004 0.021 0.061 96 L 0.717 0.020 0.001 0.004 0.034 0.224 97 S 0.080 0.006 0.001 0.012 0.109 0.792 98 S 0.002 0.001 0.028 0.801 0.116 0.053 99 E 0.001 0.001 0.029 0.905 0.060 0.006 100 G 0.001 0.001 0.014 0.966 0.018 0.001 101 R 0.001 0.001 0.004 0.984 0.009 0.003 102 R 0.001 0.001 0.004 0.986 0.006 0.002 103 N 0.001 0.001 0.007 0.984 0.006 0.002 104 L 0.002 0.001 0.011 0.969 0.011 0.007 105 Y 0.003 0.001 0.015 0.953 0.016 0.011 106 G 0.001 0.001 0.012 0.951 0.015 0.020 107 N 0.001 0.001 0.007 0.907 0.024 0.059 108 R 0.003 0.001 0.012 0.845 0.053 0.086 109 A 0.001 0.001 0.013 0.869 0.062 0.054 110 K 0.001 0.001 0.015 0.898 0.046 0.041 111 R 0.001 0.001 0.014 0.879 0.053 0.051 112 E 0.001 0.001 0.009 0.863 0.060 0.066 113 E 0.001 0.001 0.009 0.891 0.048 0.050 114 W 0.001 0.001 0.010 0.899 0.043 0.046 115 L 0.001 0.001 0.009 0.872 0.045 0.071 116 V 0.001 0.001 0.009 0.886 0.044 0.059 117 R 0.001 0.001 0.014 0.882 0.057 0.045 118 A 0.001 0.001 0.024 0.892 0.053 0.030 119 M 0.001 0.002 0.081 0.741 0.116 0.059 120 H 0.001 0.001 0.288 0.504 0.164 0.043 121 A 0.001 0.001 0.268 0.379 0.253 0.098 122 C 0.001 0.001 0.117 0.161 0.312 0.408 123 L 0.001 0.007 0.006 0.013 0.212 0.761 124 D 0.001 0.001 0.002 0.021 0.114 0.861 125 E 0.001 0.001 0.014 0.915 0.043 0.027 126 S 0.001 0.001 0.012 0.950 0.029 0.008 127 E 0.001 0.001 0.012 0.969 0.012 0.006 128 R 0.001 0.001 0.002 0.992 0.002 0.004 129 A 0.001 0.001 0.001 0.993 0.003 0.002 130 L 0.001 0.001 0.002 0.993 0.003 0.002 131 L 0.001 0.001 0.001 0.993 0.003 0.004 132 A 0.001 0.001 0.001 0.998 0.001 0.001 133 A 0.001 0.001 0.001 0.994 0.002 0.004 134 A 0.001 0.001 0.001 0.991 0.002 0.006 135 G 0.001 0.001 0.001 0.997 0.001 0.001 136 P 0.001 0.001 0.001 0.995 0.002 0.002 137 L 0.001 0.001 0.001 0.997 0.001 0.001 138 L 0.001 0.001 0.001 0.994 0.004 0.001 139 T 0.001 0.001 0.002 0.987 0.008 0.003 140 R 0.001 0.001 0.003 0.953 0.027 0.016 141 L 0.001 0.001 0.005 0.885 0.048 0.061 142 A 0.001 0.005 0.016 0.839 0.075 0.063 143 Q 0.003 0.002 0.069 0.531 0.238 0.157 144 F 0.003 0.002 0.093 0.372 0.323 0.207 145 E 0.003 0.004 0.047 0.181 0.286 0.478 146 E 0.002 0.002 0.012 0.061 0.163 0.760 147 P 0.001 0.001 0.003 0.010 0.057 0.930