# TARGET T0373 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0373.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1386 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.016 0.263 0.359 0.003 0.036 0.022 0.021 0.001 0.279 0.001 0.001 2 P 0.190 0.006 0.649 0.019 0.001 0.050 0.001 0.001 0.002 0.001 0.083 3 T 0.264 0.108 0.408 0.114 0.043 0.039 0.004 0.005 0.008 0.006 0.001 4 N 0.367 0.042 0.123 0.232 0.023 0.093 0.044 0.016 0.050 0.010 0.001 5 Q 0.816 0.015 0.035 0.101 0.004 0.009 0.008 0.003 0.006 0.003 0.001 6 D 0.867 0.007 0.033 0.068 0.001 0.013 0.005 0.003 0.002 0.001 0.001 7 L 0.896 0.008 0.019 0.057 0.002 0.009 0.004 0.002 0.002 0.001 0.001 8 Q 0.970 0.005 0.008 0.008 0.001 0.004 0.002 0.001 0.001 0.001 0.001 9 L 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.980 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 R 0.986 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 R 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 E 0.959 0.001 0.002 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.915 0.005 0.018 0.049 0.002 0.003 0.004 0.002 0.003 0.001 0.001 29 Q 0.870 0.022 0.045 0.045 0.006 0.003 0.004 0.001 0.002 0.002 0.001 30 A 0.643 0.010 0.071 0.251 0.003 0.010 0.005 0.003 0.002 0.001 0.001 31 D 0.078 0.161 0.450 0.033 0.061 0.016 0.036 0.003 0.158 0.003 0.001 32 P 0.378 0.017 0.350 0.124 0.002 0.061 0.011 0.002 0.004 0.001 0.050 33 V 0.023 0.441 0.408 0.028 0.044 0.040 0.003 0.001 0.012 0.001 0.001 34 Q 0.015 0.124 0.767 0.003 0.020 0.050 0.001 0.001 0.019 0.002 0.001 35 F 0.992 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 S 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 I 0.965 0.001 0.002 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 D 0.962 0.003 0.007 0.024 0.001 0.001 0.002 0.001 0.001 0.001 0.001 46 R 0.789 0.011 0.016 0.162 0.005 0.004 0.007 0.002 0.002 0.001 0.001 47 L 0.310 0.024 0.059 0.566 0.007 0.007 0.017 0.002 0.007 0.001 0.001 48 G 0.066 0.009 0.065 0.080 0.035 0.007 0.319 0.330 0.011 0.079 0.001 49 G 0.097 0.014 0.148 0.023 0.075 0.002 0.022 0.108 0.001 0.511 0.001 50 D 0.176 0.039 0.201 0.386 0.029 0.058 0.064 0.021 0.009 0.006 0.010 51 V 0.018 0.427 0.466 0.017 0.039 0.024 0.002 0.001 0.006 0.001 0.001 52 T 0.007 0.132 0.780 0.001 0.016 0.037 0.001 0.001 0.026 0.001 0.001 53 P 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 S 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 A 0.936 0.002 0.004 0.055 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 E 0.647 0.004 0.029 0.313 0.002 0.001 0.003 0.001 0.001 0.001 0.001 61 R 0.185 0.001 0.007 0.177 0.002 0.011 0.462 0.148 0.004 0.003 0.001 62 M 0.092 0.160 0.585 0.030 0.010 0.092 0.004 0.001 0.025 0.001 0.001 63 R 0.379 0.107 0.263 0.122 0.022 0.071 0.011 0.002 0.019 0.004 0.001 64 S 0.648 0.068 0.137 0.055 0.044 0.011 0.009 0.007 0.007 0.014 0.001 65 S 0.884 0.012 0.039 0.029 0.012 0.007 0.004 0.009 0.001 0.003 0.001 66 N 0.931 0.006 0.013 0.034 0.003 0.008 0.001 0.001 0.003 0.001 0.001 67 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 R 0.940 0.002 0.004 0.051 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 G 0.301 0.002 0.012 0.606 0.005 0.001 0.042 0.026 0.002 0.005 0.001 78 G 0.023 0.001 0.014 0.011 0.019 0.001 0.206 0.654 0.001 0.071 0.001 79 L 0.080 0.308 0.472 0.052 0.052 0.027 0.002 0.001 0.003 0.001 0.001 80 I 0.019 0.627 0.282 0.006 0.013 0.036 0.001 0.001 0.015 0.001 0.001 81 V 0.020 0.738 0.134 0.011 0.022 0.038 0.001 0.001 0.037 0.001 0.001 82 R 0.051 0.420 0.404 0.015 0.013 0.071 0.003 0.001 0.021 0.001 0.001 83 H 0.004 0.706 0.102 0.002 0.097 0.016 0.005 0.001 0.066 0.001 0.001 84 A 0.060 0.073 0.819 0.012 0.003 0.028 0.001 0.001 0.001 0.001 0.004 85 D 0.001 0.230 0.532 0.001 0.079 0.049 0.001 0.001 0.106 0.001 0.001 86 P 0.989 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 Q 0.745 0.003 0.003 0.246 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 D 0.048 0.006 0.028 0.877 0.002 0.006 0.021 0.001 0.011 0.001 0.001 89 G 0.021 0.002 0.025 0.023 0.009 0.001 0.362 0.527 0.001 0.029 0.001 90 R 0.087 0.227 0.453 0.141 0.056 0.020 0.004 0.004 0.004 0.005 0.001 91 R 0.016 0.596 0.255 0.027 0.088 0.010 0.002 0.001 0.006 0.001 0.001 92 T 0.004 0.823 0.072 0.008 0.072 0.008 0.001 0.001 0.013 0.001 0.001 93 R 0.001 0.640 0.313 0.001 0.015 0.020 0.001 0.001 0.009 0.001 0.001 94 V 0.001 0.890 0.051 0.001 0.012 0.014 0.001 0.001 0.031 0.001 0.001 95 S 0.001 0.664 0.244 0.001 0.007 0.040 0.001 0.001 0.044 0.001 0.001 96 L 0.007 0.294 0.589 0.009 0.010 0.081 0.001 0.001 0.007 0.001 0.001 97 S 0.002 0.189 0.532 0.001 0.225 0.025 0.001 0.001 0.021 0.006 0.001 98 S 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 E 0.964 0.001 0.003 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 G 0.972 0.001 0.003 0.014 0.001 0.001 0.002 0.005 0.001 0.001 0.001 101 R 0.989 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.987 0.002 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 N 0.928 0.003 0.003 0.063 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 L 0.889 0.011 0.014 0.075 0.001 0.003 0.003 0.001 0.003 0.001 0.001 105 Y 0.904 0.008 0.026 0.051 0.002 0.002 0.004 0.001 0.001 0.001 0.001 106 G 0.734 0.002 0.013 0.073 0.009 0.002 0.027 0.118 0.001 0.019 0.001 107 N 0.634 0.021 0.094 0.185 0.004 0.038 0.008 0.001 0.013 0.001 0.001 108 R 0.886 0.019 0.043 0.033 0.003 0.006 0.004 0.001 0.003 0.001 0.001 109 A 0.972 0.001 0.013 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 K 0.977 0.001 0.004 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 R 0.984 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 W 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 M 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 H 0.898 0.001 0.002 0.098 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 A 0.754 0.003 0.023 0.212 0.002 0.001 0.003 0.002 0.001 0.001 0.001 122 C 0.134 0.003 0.016 0.531 0.002 0.014 0.257 0.031 0.009 0.001 0.001 123 L 0.006 0.115 0.783 0.020 0.009 0.049 0.004 0.001 0.013 0.001 0.001 124 D 0.003 0.040 0.891 0.001 0.021 0.034 0.001 0.001 0.007 0.003 0.001 125 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 E 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 131 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 A 0.927 0.001 0.001 0.073 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 G 0.989 0.001 0.002 0.002 0.001 0.001 0.001 0.004 0.001 0.001 0.001 136 P 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 T 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 140 R 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 141 L 0.753 0.001 0.001 0.242 0.001 0.001 0.002 0.001 0.001 0.001 0.001 142 A 0.592 0.038 0.141 0.161 0.006 0.019 0.019 0.005 0.017 0.001 0.001 143 Q 0.546 0.038 0.086 0.251 0.011 0.022 0.035 0.005 0.003 0.003 0.001 144 F 0.298 0.158 0.190 0.198 0.050 0.029 0.039 0.017 0.018 0.004 0.001 145 E 0.184 0.312 0.257 0.101 0.029 0.044 0.010 0.001 0.059 0.001 0.001 146 E 0.074 0.084 0.622 0.006 0.024 0.040 0.016 0.002 0.118 0.011 0.002 147 P 0.493 0.005 0.372 0.041 0.001 0.023 0.001 0.001 0.001 0.001 0.060