# TARGET T0373 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0373.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3196 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.006 0.970 0.001 0.001 0.002 0.001 0.001 0.001 0.015 0.002 0.001 0.003 2 P 0.001 0.007 0.969 0.001 0.001 0.004 0.001 0.001 0.001 0.009 0.007 0.001 0.002 3 T 0.001 0.008 0.764 0.001 0.009 0.035 0.001 0.001 0.001 0.121 0.058 0.002 0.002 4 N 0.001 0.005 0.500 0.001 0.024 0.189 0.001 0.001 0.001 0.195 0.082 0.001 0.002 5 Q 0.001 0.004 0.182 0.001 0.051 0.557 0.001 0.001 0.001 0.092 0.111 0.001 0.001 6 D 0.001 0.003 0.111 0.001 0.027 0.772 0.001 0.001 0.001 0.032 0.052 0.001 0.002 7 L 0.001 0.002 0.037 0.001 0.012 0.902 0.001 0.001 0.001 0.024 0.020 0.001 0.001 8 Q 0.001 0.003 0.030 0.001 0.007 0.927 0.001 0.001 0.001 0.011 0.019 0.001 0.001 9 L 0.001 0.001 0.013 0.001 0.004 0.960 0.001 0.001 0.001 0.004 0.017 0.001 0.001 10 A 0.001 0.001 0.007 0.001 0.002 0.983 0.001 0.001 0.001 0.003 0.006 0.001 0.001 11 A 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 12 H 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 14 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 S 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 16 Q 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 17 V 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 18 T 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 19 T 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 20 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 21 T 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 22 R 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 23 R 0.001 0.001 0.002 0.001 0.001 0.978 0.001 0.001 0.001 0.001 0.018 0.001 0.001 24 L 0.001 0.001 0.008 0.001 0.002 0.963 0.001 0.001 0.001 0.004 0.021 0.001 0.001 25 R 0.001 0.001 0.025 0.001 0.013 0.917 0.001 0.001 0.001 0.012 0.031 0.001 0.001 26 R 0.001 0.001 0.012 0.001 0.024 0.896 0.001 0.001 0.001 0.008 0.058 0.001 0.001 27 E 0.001 0.001 0.012 0.001 0.041 0.812 0.001 0.001 0.001 0.008 0.127 0.001 0.001 28 A 0.001 0.003 0.040 0.001 0.049 0.731 0.001 0.001 0.001 0.040 0.135 0.001 0.001 29 Q 0.001 0.007 0.108 0.001 0.056 0.518 0.001 0.001 0.001 0.050 0.254 0.002 0.002 30 A 0.001 0.005 0.126 0.001 0.055 0.378 0.001 0.001 0.001 0.088 0.344 0.001 0.002 31 D 0.001 0.006 0.241 0.001 0.024 0.089 0.001 0.001 0.001 0.371 0.264 0.001 0.002 32 P 0.001 0.009 0.458 0.001 0.022 0.017 0.001 0.001 0.001 0.116 0.371 0.001 0.003 33 V 0.001 0.031 0.751 0.001 0.004 0.009 0.001 0.001 0.003 0.161 0.032 0.005 0.004 34 Q 0.001 0.016 0.867 0.001 0.001 0.022 0.001 0.001 0.003 0.075 0.005 0.001 0.008 35 F 0.001 0.001 0.017 0.001 0.012 0.938 0.001 0.001 0.001 0.013 0.019 0.001 0.001 36 S 0.001 0.001 0.006 0.001 0.007 0.973 0.001 0.001 0.001 0.002 0.011 0.001 0.001 37 Q 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.002 0.002 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 44 I 0.001 0.001 0.003 0.001 0.002 0.982 0.001 0.001 0.001 0.003 0.009 0.001 0.001 45 D 0.001 0.001 0.004 0.001 0.005 0.956 0.001 0.001 0.001 0.003 0.026 0.001 0.001 46 R 0.001 0.001 0.005 0.001 0.007 0.845 0.001 0.001 0.001 0.006 0.134 0.001 0.001 47 L 0.001 0.001 0.063 0.001 0.008 0.219 0.001 0.001 0.001 0.112 0.596 0.001 0.001 48 G 0.001 0.002 0.131 0.001 0.007 0.008 0.001 0.001 0.001 0.107 0.743 0.001 0.001 49 G 0.001 0.009 0.545 0.001 0.004 0.003 0.001 0.001 0.006 0.385 0.042 0.004 0.004 50 D 0.001 0.080 0.614 0.001 0.004 0.002 0.001 0.001 0.033 0.198 0.036 0.004 0.027 51 V 0.001 0.125 0.603 0.001 0.001 0.002 0.001 0.001 0.013 0.222 0.007 0.021 0.005 52 T 0.001 0.021 0.911 0.001 0.001 0.002 0.001 0.001 0.004 0.053 0.001 0.001 0.009 53 P 0.001 0.001 0.005 0.001 0.011 0.971 0.001 0.001 0.001 0.002 0.011 0.001 0.001 54 S 0.001 0.001 0.001 0.001 0.004 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.001 0.001 0.002 0.001 0.003 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 A 0.001 0.001 0.002 0.001 0.009 0.977 0.001 0.001 0.001 0.001 0.011 0.001 0.001 58 A 0.001 0.001 0.002 0.001 0.011 0.924 0.001 0.001 0.001 0.003 0.060 0.001 0.001 59 A 0.001 0.001 0.006 0.001 0.013 0.872 0.001 0.001 0.001 0.006 0.103 0.001 0.001 60 E 0.001 0.001 0.012 0.001 0.022 0.640 0.001 0.001 0.001 0.019 0.305 0.001 0.001 61 R 0.001 0.002 0.056 0.001 0.028 0.254 0.001 0.001 0.001 0.042 0.617 0.001 0.001 62 M 0.001 0.012 0.646 0.001 0.009 0.085 0.001 0.001 0.003 0.199 0.035 0.002 0.007 63 R 0.001 0.017 0.739 0.001 0.007 0.056 0.001 0.001 0.005 0.145 0.024 0.002 0.004 64 S 0.001 0.001 0.074 0.001 0.043 0.712 0.001 0.001 0.002 0.061 0.105 0.001 0.001 65 S 0.001 0.002 0.034 0.001 0.083 0.696 0.001 0.001 0.001 0.037 0.147 0.001 0.001 66 N 0.001 0.006 0.034 0.001 0.064 0.803 0.001 0.001 0.001 0.023 0.068 0.001 0.001 67 L 0.001 0.001 0.011 0.001 0.013 0.954 0.001 0.001 0.001 0.003 0.018 0.001 0.001 68 A 0.001 0.001 0.004 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 69 A 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 70 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 71 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 72 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 73 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 74 L 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.011 0.001 0.001 75 E 0.001 0.001 0.005 0.001 0.001 0.923 0.001 0.001 0.001 0.008 0.062 0.001 0.001 76 R 0.001 0.001 0.004 0.001 0.005 0.641 0.001 0.001 0.001 0.004 0.345 0.001 0.001 77 G 0.001 0.001 0.001 0.001 0.001 0.036 0.001 0.001 0.001 0.010 0.952 0.001 0.001 78 G 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.973 0.001 0.001 79 L 0.003 0.023 0.765 0.001 0.002 0.003 0.004 0.001 0.011 0.061 0.034 0.050 0.043 80 I 0.059 0.027 0.131 0.003 0.001 0.001 0.034 0.001 0.071 0.019 0.006 0.080 0.569 81 V 0.101 0.003 0.080 0.004 0.001 0.001 0.039 0.001 0.075 0.007 0.001 0.598 0.091 82 R 0.038 0.003 0.080 0.003 0.001 0.001 0.017 0.001 0.071 0.010 0.001 0.021 0.754 83 H 0.030 0.008 0.208 0.019 0.001 0.001 0.009 0.001 0.068 0.023 0.003 0.536 0.094 84 A 0.036 0.053 0.117 0.002 0.001 0.001 0.005 0.001 0.009 0.029 0.001 0.037 0.711 85 D 0.002 0.083 0.682 0.003 0.001 0.001 0.001 0.001 0.004 0.033 0.002 0.053 0.136 86 P 0.001 0.001 0.016 0.001 0.108 0.023 0.001 0.001 0.001 0.030 0.820 0.001 0.002 87 Q 0.001 0.001 0.005 0.001 0.078 0.007 0.001 0.001 0.001 0.036 0.872 0.001 0.001 88 D 0.001 0.002 0.068 0.006 0.165 0.012 0.001 0.001 0.001 0.080 0.664 0.002 0.002 89 G 0.001 0.011 0.387 0.003 0.034 0.007 0.001 0.001 0.001 0.305 0.240 0.003 0.009 90 R 0.010 0.016 0.547 0.021 0.009 0.002 0.002 0.001 0.001 0.177 0.085 0.036 0.094 91 R 0.107 0.024 0.164 0.032 0.005 0.001 0.009 0.001 0.005 0.094 0.015 0.050 0.493 92 T 0.343 0.002 0.067 0.019 0.001 0.001 0.042 0.001 0.005 0.009 0.001 0.413 0.096 93 R 0.453 0.001 0.025 0.004 0.001 0.001 0.132 0.004 0.012 0.002 0.001 0.070 0.295 94 V 0.701 0.001 0.010 0.013 0.001 0.001 0.097 0.003 0.008 0.001 0.001 0.090 0.075 95 S 0.505 0.002 0.021 0.003 0.001 0.001 0.108 0.003 0.016 0.003 0.001 0.192 0.145 96 L 0.228 0.009 0.196 0.003 0.001 0.002 0.045 0.002 0.031 0.029 0.003 0.155 0.296 97 S 0.010 0.004 0.696 0.001 0.001 0.008 0.001 0.001 0.012 0.085 0.003 0.020 0.159 98 S 0.001 0.001 0.006 0.001 0.052 0.828 0.001 0.001 0.001 0.015 0.099 0.001 0.001 99 E 0.001 0.001 0.006 0.001 0.054 0.831 0.001 0.001 0.001 0.010 0.097 0.001 0.001 100 G 0.001 0.001 0.011 0.001 0.031 0.920 0.001 0.001 0.001 0.010 0.026 0.001 0.001 101 R 0.001 0.001 0.006 0.001 0.008 0.977 0.001 0.001 0.001 0.002 0.007 0.001 0.001 102 R 0.001 0.001 0.006 0.001 0.014 0.954 0.001 0.001 0.001 0.003 0.020 0.001 0.001 103 N 0.001 0.001 0.008 0.001 0.017 0.925 0.001 0.001 0.001 0.008 0.036 0.001 0.002 104 L 0.001 0.001 0.023 0.001 0.020 0.909 0.001 0.001 0.001 0.010 0.034 0.001 0.002 105 Y 0.001 0.001 0.021 0.001 0.023 0.874 0.001 0.001 0.001 0.012 0.065 0.001 0.001 106 G 0.001 0.001 0.030 0.001 0.023 0.798 0.001 0.001 0.001 0.019 0.125 0.001 0.001 107 N 0.001 0.001 0.116 0.001 0.024 0.721 0.001 0.001 0.001 0.043 0.092 0.001 0.001 108 R 0.001 0.001 0.076 0.001 0.011 0.844 0.001 0.001 0.001 0.027 0.040 0.001 0.001 109 A 0.001 0.001 0.024 0.001 0.005 0.945 0.001 0.001 0.001 0.011 0.014 0.001 0.001 110 K 0.001 0.001 0.009 0.001 0.003 0.978 0.001 0.001 0.001 0.003 0.006 0.001 0.001 111 R 0.001 0.001 0.006 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.004 0.001 0.001 112 E 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.002 0.003 0.001 0.001 113 E 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 114 W 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 115 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 116 V 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 117 R 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.014 0.001 0.001 118 A 0.001 0.001 0.003 0.001 0.003 0.953 0.001 0.001 0.001 0.003 0.038 0.001 0.001 119 M 0.001 0.001 0.008 0.001 0.012 0.915 0.001 0.001 0.001 0.006 0.059 0.001 0.001 120 H 0.001 0.001 0.018 0.001 0.097 0.672 0.001 0.001 0.001 0.013 0.197 0.001 0.001 121 A 0.001 0.001 0.038 0.001 0.117 0.352 0.001 0.001 0.001 0.077 0.414 0.001 0.001 122 C 0.001 0.005 0.173 0.001 0.079 0.155 0.001 0.001 0.002 0.140 0.443 0.001 0.002 123 L 0.001 0.031 0.500 0.001 0.002 0.016 0.001 0.001 0.002 0.419 0.026 0.002 0.002 124 D 0.001 0.002 0.915 0.001 0.001 0.019 0.001 0.001 0.001 0.059 0.003 0.001 0.001 125 E 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 126 S 0.001 0.001 0.001 0.001 0.005 0.990 0.001 0.001 0.001 0.001 0.004 0.001 0.001 127 E 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 128 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 130 L 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 131 L 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 132 A 0.001 0.001 0.001 0.001 0.004 0.975 0.001 0.001 0.001 0.001 0.019 0.001 0.001 133 A 0.001 0.001 0.002 0.001 0.005 0.900 0.001 0.001 0.001 0.002 0.090 0.001 0.001 134 A 0.001 0.001 0.006 0.001 0.005 0.898 0.001 0.001 0.001 0.005 0.087 0.001 0.001 135 G 0.001 0.001 0.019 0.001 0.008 0.927 0.001 0.001 0.001 0.026 0.020 0.001 0.001 136 P 0.001 0.001 0.005 0.001 0.010 0.957 0.001 0.001 0.001 0.003 0.025 0.001 0.001 137 L 0.001 0.001 0.002 0.001 0.006 0.971 0.001 0.001 0.001 0.002 0.019 0.001 0.001 138 L 0.001 0.001 0.004 0.001 0.002 0.983 0.001 0.001 0.001 0.003 0.007 0.001 0.001 139 T 0.001 0.001 0.003 0.001 0.009 0.973 0.001 0.001 0.001 0.002 0.013 0.001 0.001 140 R 0.001 0.001 0.002 0.001 0.007 0.970 0.001 0.001 0.001 0.002 0.019 0.001 0.001 141 L 0.001 0.001 0.010 0.001 0.029 0.929 0.001 0.001 0.001 0.005 0.027 0.001 0.001 142 A 0.001 0.002 0.014 0.001 0.056 0.803 0.001 0.001 0.001 0.013 0.109 0.001 0.001 143 Q 0.001 0.001 0.014 0.001 0.061 0.572 0.001 0.001 0.001 0.019 0.330 0.001 0.001 144 F 0.001 0.001 0.143 0.001 0.070 0.417 0.001 0.001 0.001 0.096 0.270 0.001 0.002 145 E 0.001 0.010 0.370 0.001 0.035 0.137 0.001 0.001 0.001 0.207 0.234 0.001 0.004 146 E 0.001 0.004 0.831 0.001 0.006 0.024 0.001 0.001 0.001 0.088 0.043 0.001 0.001 147 P 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.001