# TARGET T0373 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0373.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2372 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.040 0.250 0.448 0.005 0.035 0.028 0.019 0.001 0.171 0.002 0.001 2 P 0.215 0.009 0.631 0.024 0.001 0.049 0.001 0.001 0.003 0.001 0.068 3 T 0.289 0.117 0.318 0.169 0.035 0.040 0.009 0.005 0.011 0.005 0.001 4 N 0.215 0.074 0.225 0.158 0.050 0.097 0.086 0.022 0.056 0.016 0.001 5 Q 0.722 0.022 0.056 0.160 0.006 0.010 0.011 0.004 0.006 0.003 0.001 6 D 0.718 0.023 0.077 0.133 0.006 0.017 0.012 0.006 0.006 0.002 0.001 7 L 0.792 0.024 0.055 0.087 0.005 0.016 0.011 0.004 0.004 0.001 0.001 8 Q 0.900 0.019 0.036 0.016 0.004 0.009 0.006 0.003 0.005 0.002 0.001 9 L 0.983 0.002 0.004 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 10 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.991 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 R 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 R 0.990 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 E 0.963 0.001 0.001 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.907 0.005 0.018 0.055 0.001 0.004 0.004 0.002 0.003 0.001 0.001 29 Q 0.869 0.027 0.047 0.040 0.005 0.004 0.004 0.001 0.001 0.002 0.001 30 A 0.642 0.011 0.064 0.259 0.004 0.010 0.004 0.002 0.002 0.001 0.001 31 D 0.059 0.166 0.422 0.031 0.058 0.017 0.033 0.002 0.210 0.002 0.001 32 P 0.349 0.017 0.383 0.104 0.001 0.071 0.011 0.002 0.004 0.001 0.056 33 V 0.019 0.436 0.409 0.029 0.048 0.044 0.003 0.001 0.011 0.001 0.001 34 Q 0.013 0.134 0.756 0.003 0.025 0.047 0.001 0.001 0.020 0.003 0.001 35 F 0.992 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 S 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 I 0.978 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 D 0.972 0.002 0.004 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 R 0.819 0.013 0.016 0.134 0.004 0.004 0.006 0.001 0.003 0.001 0.001 47 L 0.247 0.018 0.042 0.655 0.006 0.004 0.017 0.002 0.008 0.001 0.001 48 G 0.041 0.003 0.041 0.044 0.018 0.005 0.352 0.437 0.004 0.053 0.001 49 G 0.084 0.028 0.141 0.021 0.109 0.002 0.016 0.086 0.002 0.511 0.001 50 D 0.182 0.041 0.333 0.269 0.025 0.071 0.036 0.009 0.007 0.005 0.023 51 V 0.026 0.478 0.392 0.024 0.048 0.023 0.002 0.001 0.006 0.001 0.001 52 T 0.007 0.150 0.747 0.001 0.022 0.039 0.001 0.001 0.032 0.001 0.001 53 P 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 S 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 A 0.932 0.002 0.004 0.060 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 E 0.668 0.005 0.031 0.288 0.002 0.001 0.003 0.001 0.001 0.001 0.001 61 R 0.229 0.002 0.008 0.201 0.002 0.013 0.419 0.118 0.005 0.003 0.001 62 M 0.106 0.164 0.573 0.030 0.011 0.089 0.004 0.001 0.022 0.001 0.001 63 R 0.443 0.101 0.203 0.140 0.020 0.061 0.008 0.002 0.018 0.003 0.001 64 S 0.713 0.060 0.108 0.044 0.036 0.008 0.008 0.005 0.006 0.011 0.001 65 S 0.922 0.007 0.025 0.022 0.007 0.004 0.003 0.007 0.001 0.002 0.001 66 N 0.949 0.005 0.009 0.027 0.002 0.005 0.001 0.001 0.002 0.001 0.001 67 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 R 0.959 0.001 0.002 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 G 0.269 0.001 0.008 0.666 0.003 0.001 0.027 0.021 0.001 0.003 0.001 78 G 0.017 0.001 0.009 0.011 0.011 0.001 0.343 0.570 0.001 0.036 0.001 79 L 0.072 0.324 0.457 0.056 0.051 0.032 0.003 0.001 0.003 0.001 0.001 80 I 0.016 0.649 0.261 0.006 0.016 0.035 0.001 0.001 0.014 0.001 0.001 81 V 0.017 0.768 0.107 0.012 0.030 0.031 0.001 0.001 0.034 0.001 0.001 82 R 0.033 0.469 0.391 0.010 0.015 0.060 0.002 0.001 0.019 0.001 0.001 83 H 0.004 0.729 0.098 0.002 0.088 0.016 0.004 0.001 0.059 0.001 0.001 84 A 0.053 0.093 0.805 0.012 0.004 0.028 0.001 0.001 0.001 0.001 0.003 85 D 0.001 0.228 0.545 0.001 0.079 0.046 0.001 0.001 0.099 0.001 0.001 86 P 0.989 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 Q 0.737 0.003 0.003 0.252 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 D 0.048 0.007 0.031 0.867 0.002 0.007 0.024 0.001 0.012 0.001 0.001 89 G 0.022 0.003 0.027 0.026 0.011 0.001 0.396 0.486 0.001 0.027 0.001 90 R 0.080 0.250 0.449 0.126 0.058 0.021 0.005 0.004 0.004 0.004 0.001 91 R 0.015 0.609 0.253 0.024 0.079 0.011 0.001 0.001 0.006 0.001 0.001 92 T 0.005 0.818 0.075 0.009 0.071 0.009 0.001 0.001 0.012 0.001 0.001 93 R 0.001 0.688 0.258 0.001 0.022 0.019 0.001 0.001 0.011 0.001 0.001 94 V 0.001 0.883 0.058 0.001 0.011 0.015 0.001 0.001 0.031 0.001 0.001 95 S 0.001 0.654 0.242 0.001 0.007 0.043 0.001 0.001 0.052 0.001 0.001 96 L 0.008 0.251 0.638 0.010 0.008 0.078 0.001 0.001 0.006 0.001 0.001 97 S 0.002 0.180 0.556 0.001 0.212 0.024 0.001 0.001 0.020 0.005 0.001 98 S 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 E 0.962 0.001 0.002 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 G 0.969 0.001 0.004 0.015 0.001 0.001 0.002 0.005 0.001 0.002 0.001 101 R 0.988 0.001 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.986 0.002 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 N 0.921 0.003 0.003 0.069 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 L 0.886 0.011 0.016 0.074 0.001 0.004 0.003 0.001 0.003 0.001 0.001 105 Y 0.907 0.008 0.030 0.045 0.002 0.002 0.004 0.001 0.001 0.001 0.001 106 G 0.740 0.002 0.013 0.071 0.009 0.002 0.023 0.118 0.001 0.020 0.001 107 N 0.647 0.020 0.103 0.163 0.004 0.040 0.007 0.001 0.012 0.001 0.001 108 R 0.895 0.018 0.039 0.031 0.003 0.006 0.004 0.001 0.003 0.001 0.001 109 A 0.977 0.001 0.009 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 K 0.973 0.001 0.003 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 R 0.968 0.001 0.002 0.025 0.001 0.002 0.001 0.001 0.001 0.001 0.001 112 E 0.991 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 E 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 W 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 A 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 M 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 H 0.891 0.001 0.003 0.102 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 A 0.774 0.004 0.026 0.189 0.002 0.001 0.002 0.001 0.001 0.001 0.001 122 C 0.131 0.003 0.015 0.592 0.002 0.012 0.203 0.032 0.009 0.001 0.001 123 L 0.006 0.111 0.791 0.018 0.008 0.048 0.004 0.001 0.013 0.001 0.001 124 D 0.003 0.044 0.886 0.001 0.021 0.035 0.001 0.001 0.006 0.003 0.001 125 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 E 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 131 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 A 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 A 0.884 0.001 0.001 0.115 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 G 0.978 0.001 0.004 0.004 0.001 0.001 0.002 0.007 0.001 0.002 0.001 136 P 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 L 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 140 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 141 L 0.987 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 142 A 0.981 0.001 0.003 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 143 Q 0.798 0.004 0.008 0.182 0.002 0.001 0.003 0.001 0.001 0.001 0.001 144 F 0.425 0.030 0.090 0.391 0.009 0.012 0.025 0.007 0.008 0.001 0.001 145 E 0.273 0.131 0.161 0.210 0.025 0.079 0.065 0.005 0.047 0.004 0.001 146 E 0.059 0.183 0.454 0.011 0.048 0.042 0.022 0.002 0.166 0.012 0.001 147 P 0.552 0.004 0.314 0.044 0.001 0.029 0.004 0.002 0.001 0.002 0.047