# List of top-scoring protein chains for T0372.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v93A 296 7.91e-02 c.1.23.1 100532 1mk4A 157 1.03e+00 d.108.1.1 84979 1kk8C 154 2.81e+00 a.39.1.5 77431 1wdcC 156 2.82e+00 1wdcC a.39.1.5 17317 1dflX 152 3.74e+00 1wdcC a.39.1.5 17321 1scmC 149 4.33e+00 1wdcC a.39.1.5 17319 1gawA 314 4.78e+00 1fnc b.43.4.2,c.25.1.1 25643,31533 1lk5A 229 5.23e+00 c.124.1.4,d.58.40.1 73960,73961 1aop 497 5.51e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2fvgA 340 8.08e+00 1cyg 680 8.13e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21843,22512,27750,28737 2g9iA 249 1.18e+01 1k3yA 221 1.22e+01 a.45.1.1,c.47.1.5 77245,77246 1pl1A 222 1.23e+01 a.45.1.1,c.47.1.5 104178,104179 1gseA 221 1.23e+01 1pgtA a.45.1.1,c.47.1.5 17667,32961 1twyA 290 1.29e+01 1ydkA 222 1.33e+01 1usbA 225 1.35e+01 a.45.1.1,c.47.1.5 108001,108002 1ii8A 195 1.36e+01 1f2tA c.37.1.12 62417 4matA 278 1.38e+01 1c24A d.127.1.1 41150 2glfA 450 1.38e+01 1xwgA 221 1.49e+01 1pl2A 222 1.50e+01 a.45.1.1,c.47.1.5 104182,104183 1qg0A 308 1.58e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1qgaA 308 1.58e+01 1fnc b.43.4.2,c.25.1.1 25637,31527 1qfzA 308 1.58e+01 1fnc b.43.4.2,c.25.1.1 25633,31523 3matA 265 2.17e+01 1c24A d.127.1.1 41149 2fug9 182 2.39e+01 2ggcA 263 2.44e+01 1xnzA 264 2.45e+01 1c24A 263 2.47e+01 1c24A d.127.1.1 41148 1yvmA 264 2.48e+01 1nd7A 374 2.76e+01 d.148.1.1 91817 1x54A 434 2.85e+01 1t5yA 190 3.41e+01 b.122.1.1,d.17.6.3 106495,106496 1uj3A 215 3.60e+01 b.1.1.1,b.1.1.2 107888,107889 1pg5A 299 3.64e+01 c.78.1.1,c.78.1.1 104146,104147 1kk9A 221 3.71e+01 d.115.1.1 77432 1jptL 214 3.75e+01 b.1.1.1,b.1.1.2 67053,67054 1pg7L 213 3.80e+01 b.1.1.1,b.1.1.2 94678,94679 1otoA 236 3.81e+01 c.10.2.1 93525 1ylnA 252 3.99e+01 1otnA 236 4.00e+01 c.10.2.1 93524 2aj6A 159 4.04e+01 1otmA 236 4.05e+01 c.10.2.1 93523 1sqwA 188 4.25e+01 1ovgA 238 4.35e+01 c.56.2.1 93596 1e3oC 160 4.43e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1bqg 451 4.46e+01 1bqg c.1.11.2,d.54.1.1 29217,38861 2cv8A 180 4.50e+01 1pw7A 239 4.50e+01 c.56.2.1 95202 2dfpA 534 4.63e+01 2bce c.69.1.1 34597 2cekA 535 4.63e+01 1ut6A 537 4.63e+01 1ea5A 537 4.63e+01 2bce c.69.1.1 34592 1eeaA 534 4.63e+01 2bce c.69.1.1 34609 1gqrA 532 4.63e+01 c.69.1.1 70374 1w6rA 543 4.63e+01 1jl5A 454 4.69e+01 c.10.2.6 66830 2fug2 181 4.69e+01 1k7jA 206 4.74e+01 d.115.1.1 72103 2fb4L 216 4.75e+01 8fabA b.1.1.1,b.1.1.2 19846,20950 1wkbA 810 4.75e+01 1d0bA 213 4.83e+01 1d0bA c.10.2.1 30866 2c58A 537 5.03e+01 1zc2A 361 5.07e+01 1ecpA 238 5.31e+01 1ecpA c.56.2.1 33775 1pk9A 237 5.32e+01 c.56.2.1 94823 1vjzA 341 5.32e+01 c.1.8.3 100838 1zunB 434 5.49e+01 1wz2A 967 5.56e+01 1y1uA 585 5.63e+01 1e2rA 567 5.71e+01 1qksA a.3.1.2,b.70.2.1 15953,27712 1qksA 567 5.71e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2f8lA 344 5.86e+01 1t61C 227 6.11e+01 d.169.1.6,d.169.1.6 106533,106534 1slm 255 6.34e+01 1hfc a.20.1.2,d.92.1.11 59042,59043 1k8kD 300 6.41e+01 d.198.2.1,d.198.2.1 68309,68310 2g4cA 474 6.51e+01 1m9sA 605 6.53e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 2cvbA 188 6.64e+01 1h6tA 291 6.65e+01 b.1.18.15,c.10.2.1 65686,65687 2gwdA 449 6.82e+01 1z9hA 290 6.89e+01 1yf5L 254 6.91e+01 2fp7B 172 6.92e+01 1w97L 246 6.99e+01 2bh1A 250 7.03e+01 1sd6A 123 7.15e+01 a.4.5.39 98803 1ylmA 144 7.15e+01 1b04A 318 7.16e+01 1b04A d.142.2.2 41579 1csp 67 7.25e+01 1mjc b.40.4.5 25321 1uwhA 276 7.42e+01 d.144.1.7 100123 1gt0C 159 7.44e+01 a.4.1.1,a.35.1.1 76335,76336 1gq1A 567 7.45e+01 a.3.1.2,b.70.2.1 76264,76265 1hj5A 567 7.45e+01 1qksA a.3.1.2,b.70.2.1 15927,27684 1clkA 387 7.50e+01 4xis c.1.15.3 29438 2etfA 441 7.50e+01 1f83A 425 7.61e+01 1f82A d.92.1.7 40306 1f82A 424 7.61e+01 1f82A d.92.1.7 40307 1p5zB 263 7.67e+01 c.37.1.1 87815 2gyiA 386 7.79e+01 4xis c.1.15.3 29409 1va6A 518 8.01e+01 1hc7A 477 8.04e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1d2vA 104 8.10e+01 1d2vA a.93.1.2 18697 1yqtA 538 8.10e+01 1mhlA 108 8.23e+01 1d2vA a.93.1.2 18699 1uwjA 276 8.26e+01 d.144.1.7 100125 1o4xA 167 8.34e+01 a.4.1.1,a.35.1.1 92470,92471 1y43B 173 8.62e+01 1nioA 247 8.77e+01 d.165.1.1 91890 1sseB 86 8.88e+01 1eiwA 111 8.95e+01 1eiwA c.23.3.1 31130