CreatePredAlphaCost pred_alpha2k alpha11 T0370.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0370.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0370.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 


// remove maybe_ssbond weight if protein known to be in reducing environment.
// remove maybe_metal weight if protein known to have disulfides or
//	known not to bind metal ions.

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

//include T0370.dssp-ehl2.constraints
//include T0370.undertaker-align.sheets
//include rr.constraints


KnownBreak	M155

Constraint	W27.CB	W181.CB	-10	6.4	7	2
Constraint	L84.CB	V195.CB	-10	8.3	9	2
Constraint	L84.CB	W181.CB	-10	10	10.3	2
Constraint	L84.CB	L194.CB	-10	6.4	6.9	2
Constraint	P38.CB	P192.CB	-10	4.7	5.2	2
Constraint	A31.CB	P192.CB	-10	6.0	6.7	2
Constraint	P38.CB	A185.CB	-10	6.0	6.6	2
Constraint	L40.CB	L238.CB	-10	6.4	7.0	2
Constraint	P42.CB	L236.CB	-10	6.5	7.1	2