# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rfeA 162 1.06e-15 2asfA 137 1.68e-13 2fg9A 178 8.01e-11 2fhqA 141 3.48e-10 2aq6A 147 3.81e-10 1xxoA 147 3.87e-10 1w9aA 147 5.04e-10 1g79A 218 1.31e-08 1ci0A b.45.1.1 25752 1dnlA 199 1.48e-08 1ci0A b.45.1.1 25753 2furA 209 2.10e-08 1t9mA 214 4.32e-07 1vl7A 157 1.98e-06 b.45.1.1 108732 1w3oA 216 2.11e-06 1nrgA 261 3.21e-06 b.45.1.1 80694 2arzA 247 3.76e-06 1ty9A 222 5.91e-06 1axj 122 1.03e-05 1axj b.45.1.1 25749 1flmA 122 1.07e-05 1axj b.45.1.1 25747 1ci0A 228 8.34e-04 1ci0A b.45.1.1 25750 1ejeA 192 4.48e-03 1ejeA b.45.1.2 25757 1pvtA 238 8.90e-02 c.74.1.1 95189 1xhnA 184 3.01e-01 1ko3A 230 9.77e-01 d.157.1.1 90974 1ecl 597 2.70e+00 1ecl e.10.1.1 43238 1jkmA 358 4.05e+00 1jkmA c.69.1.2 34633 1d7pM 159 4.71e+00 1cztA b.18.1.2 23718 1tuaA 191 4.84e+00 d.51.1.1,d.51.1.1 107321,107322 1u4nA 310 5.86e+00 1qs2A 401 5.92e+00 1qs1A d.166.1.1,d.166.1.1 42268,42269 2bitX 165 5.93e+00 1dj0A 264 6.10e+00 1dj0A d.265.1.1 90337 2gibA 103 6.26e+00 1g2oA 268 6.34e+00 1b8oA c.56.2.1 60228 1qs1A 462 6.56e+00 1qs1A d.166.1.1,d.166.1.1 42260,42261 1jkmB 361 6.78e+00 1jkmA c.69.1.2 34634 1k3eA 156 7.06e+00 d.198.1.1 68103 1fybA 111 8.52e+00 4sgbI g.69.1.1,g.69.1.1 44726,44727 1qm4A 396 9.52e+00 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 1byuA 216 1.06e+01 1byuA c.37.1.8 32032 1mw9X 592 1.09e+01 e.10.1.1 91480 1yo8A 634 1.10e+01 1widA 130 1.15e+01 2bgiA 272 1.15e+01 2fsqA 243 1.23e+01 2cxaA 256 1.28e+01 1diwA 441 1.31e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 1euhA 475 1.36e+01 1euhA c.82.1.1 35369 1qi6A 475 1.39e+01 1euhA c.82.1.1 35373 1qxrA 189 1.53e+01 b.82.1.7 96552 1ivd 388 1.54e+01 2qwc b.68.1.1 27568 1d0hA 469 1.57e+01 1a8d b.29.1.6,b.42.4.2 24265,25610 1i50K 120 1.68e+01 d.74.3.2 61765 1cy9A 264 1.69e+01 1ecl e.10.1.1 43236 1tr8A 102 1.84e+01 1xrhA 351 1.89e+01 1gmlA 178 1.94e+01 c.8.5.2 70273 1x82A 190 1.98e+01 1a8d 452 2.03e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1jic 62 2.13e+01 1azpA b.34.13.1 37462 1i2mA 216 2.23e+01 1byuA c.37.1.8 61568 1nr4A 71 2.30e+01 d.9.1.1 92077 1qbeA 132 2.37e+01 1qbeA d.85.1.1 40138 1s8fA 177 2.56e+01 c.37.1.8 105370 1n8jA 186 2.59e+01 c.47.1.10 85401 1j5kA 89 2.65e+01 d.51.1.1 71565 1faoA 126 2.68e+01 1faoA b.55.1.1 26974 1bcpC 199 3.11e+01 1bcpB b.40.2.1,d.169.1.2 25121,42430 1qr4A 186 3.16e+01 1qr4B b.1.2.1,b.1.2.1 21986,21987 1uurA 473 3.24e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1wxaA 116 3.27e+01 2d93A 134 3.30e+01 2a4nA 182 3.55e+01 2au3A 407 3.64e+01 1f6fB 210 3.71e+01 1axiB b.1.2.1,b.1.2.1 22033,22034 1wmsA 177 3.76e+01 c.37.1.8 109414 1pjjA 271 3.80e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1tmcA 175 3.82e+01 1agdA d.19.1.1 38258 1nnjA 271 3.83e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1tdzA 272 3.86e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1wmmA 145 3.88e+01 1ihgA 370 3.89e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1zarA 282 4.13e+01 1tqmA 282 4.13e+01 a.4.5.56,d.144.1.9 107236,107237 1kskA 234 4.27e+01 d.66.1.5,d.265.1.3 72920,90389 1twfK 120 4.30e+01 1mal 421 4.36e+01 2mprA f.4.3.2 43784 2f2hA 773 4.41e+01 2cbzA 237 4.45e+01 1azqA 66 4.51e+01 1azpA b.34.13.1 37469 1a9eA 277 4.56e+01 1agdA b.1.1.2,d.19.1.1 20757,38268 1qr4B 186 4.78e+01 1qr4B b.1.2.1,b.1.2.1 21988,21989 2cmwA 310 4.84e+01 1e8bA 160 4.85e+01 1e8bA g.14.1.2,g.14.1.2,g.27.1.1 44671,44672,44951 1ob8A 135 4.86e+01 1dd5A 185 4.87e+01 1dd5A d.67.3.1 39564 2bopA 85 4.96e+01 2bopA d.58.8.1 39217 1azpA 66 5.07e+01 1azpA b.34.13.1 37467 2fo3A 125 5.15e+01 1zzkA 82 5.17e+01 1yzgA 179 5.18e+01 1kwiA 101 5.21e+01 d.17.1.3 77564 1iqrA 420 5.36e+01 a.99.1.1,c.28.1.1 66275,66276 2b5oA 402 5.56e+01 1j5yA 187 5.61e+01 a.4.5.1,d.94.2.1 71592,71593 1n71A 180 5.74e+01 d.108.1.1 85370 1b87A 181 5.74e+01 1b87A d.108.1.1 40797 2fblA 153 5.86e+01 1r6lA 239 5.88e+01 d.14.1.4,d.101.1.1 97153,97154 1ew3A 159 5.88e+01 1mup b.60.1.1 27114 1fzyA 149 5.89e+01 d.20.1.1 65072 1sr4A 206 5.90e+01 b.42.2.1 105948 1jj2X 240 6.16e+01 1ffkV c.9.2.1 63109 1b9hA 388 6.19e+01 1b9hA c.67.1.4 34488 1s72Y 241 6.22e+01 c.9.2.1 105344 1bxrA 1073 6.24e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18570,31499,31697,31698,41542,41543 1ivg 388 6.24e+01 2qwc b.68.1.1 27578 1vk8A 106 6.37e+01 d.58.48.1 108636 1fivA 113 6.40e+01 1fmb b.50.1.1 26764 1obpA 159 6.43e+01 1obpA b.60.1.1 27092 1t13A 158 6.62e+01 1btkB 169 6.66e+01 1btkA b.55.1.1 26960 1chrA 370 6.70e+01 1mucA c.1.11.2,d.54.1.1 29252,38896 1upqA 123 6.70e+01 1zy9A 564 6.85e+01 3fivA 116 6.93e+01 1fmb b.50.1.1 26768 2rmcA 182 6.95e+01 2cpl b.62.1.1 27491 1yw5A 177 7.06e+01 1xcrA 316 7.10e+01 1a8rA 221 7.24e+01 1a8rA d.96.1.1 40587 1n13B 113 7.32e+01 1m40A 263 7.39e+01 e.3.1.1 74437 1fqgA 263 7.39e+01 1btl e.3.1.1 42699 1btl 263 7.39e+01 1btl e.3.1.1 42691 1ermA 263 7.39e+01 1btl e.3.1.1 42690 4fiv 113 7.45e+01 1fmb b.50.1.1 26762 1egaA 301 7.47e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 1gt8C 1025 7.52e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70428,70429,70430,70431,70432 1m2xA 223 7.56e+01 d.157.1.1 84764 1ylnA 252 7.68e+01 1fxlA 167 7.81e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2bneA 241 7.85e+01 1vq0A 302 7.93e+01 1obbA 480 7.99e+01 c.2.1.5,d.162.1.2 86760,86761 2bjrA 368 7.99e+01 1bf4A 63 7.99e+01 1azpA b.34.13.1 37461 1e88A 160 8.01e+01 g.14.1.2,g.14.1.2,g.27.1.1 44669,44670,44950 1o5oA 221 8.03e+01 c.61.1.1 92509 1yb2A 275 8.13e+01 1gc1G 321 8.21e+01 1gc1G d.172.1.1 42493 1xsjA 778 8.30e+01 1h7wA 1025 8.34e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2h17A 181 8.35e+01 1gteA 1025 8.40e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1g8kB 133 8.43e+01 1g8jB b.33.1.1 24435 1dgrN 79 8.47e+01 1caxB 1dgrV 79 8.48e+01 1caxB b.82.1.2 28099 2bvpA 276 8.51e+01 1gthC 1025 8.55e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70493,70494,70495,70496,70497 2etvA 346 8.58e+01 1h7wD 1025 8.59e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15686,28631,30327,30612,39010 1af6A 421 8.64e+01 2mprA f.4.3.2 43772 1gthA 1025 8.75e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70483,70484,70485,70486,70487 1zatA 250 8.79e+01 1xh3A 276 8.82e+01 1xt8A 292 8.86e+01 1ukuA 102 8.87e+01 d.58.5.2 99533 1a1nA 276 8.88e+01 1agdA b.1.1.2,d.19.1.1 20755,38267 2fivA 116 8.89e+01 1fmb b.50.1.1 26766 1mg4A 113 8.89e+01 d.15.11.1 84953 1jlyA 304 8.95e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1npdA 288 8.95e+01 c.2.1.7,c.58.1.5 80681,80682 1zcxA 178 8.98e+01 1jlxA 304 8.98e+01 1jlyA b.42.3.1,b.42.3.1 25583,25584