# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g79A 218 3.19e-23 1ci0A b.45.1.1 25752 1dnlA 199 4.00e-23 1ci0A b.45.1.1 25753 1nrgA 261 1.87e-20 b.45.1.1 80694 1ty9A 222 3.51e-18 1rfeA 162 1.89e-16 2fhqA 141 2.88e-13 2asfA 137 2.84e-12 2arzA 247 7.81e-12 1vl7A 157 1.52e-11 b.45.1.1 108732 2aq6A 147 2.66e-11 1w9aA 147 5.37e-11 2fg9A 178 6.37e-10 2furA 209 9.92e-09 1xhnA 184 8.22e-08 1w3oA 216 9.00e-06 1flmA 122 3.37e-05 1axj b.45.1.1 25747 1ejeA 192 7.35e-03 1ejeA b.45.1.2 25757 1pvtA 238 2.40e-01 c.74.1.1 95189 2cw5A 255 4.78e-01 1iwmA 186 5.74e-01 b.125.1.2 83758 1i0rA 169 1.68e+00 1i0rA b.45.1.2 61489 1wsrA 375 1.73e+00 1llnA 262 1.83e+00 d.165.1.1 84625 2cbzA 237 2.08e+00 1b8aA 438 2.65e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1widA 130 4.05e+00 1bupA 386 4.37e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 2bbsA 290 4.51e+00 1ykjA 394 4.61e+00 1w8oA 601 4.64e+00 1am2 199 4.78e+00 1am2 b.86.1.2 28381 1k0iA 394 5.16e+00 c.3.1.2,d.16.1.2 67942,67943 1h3gA 601 5.58e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1vclA 432 6.31e+00 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2a1kA 233 6.87e+00 1jvbA 347 7.71e+00 b.35.1.2,c.2.1.1 77181,77182 2cveA 191 8.90e+00 1n6aA 259 9.38e+00 b.76.2.1,b.85.7.1 80121,80122 1l0qA 391 9.82e+00 b.1.3.1,b.69.2.3 77644,77645 1uwvA 433 9.83e+00 b.40.4.12,c.66.1.40 100128,100129 2bgiA 272 1.01e+01 1w6sA 599 1.03e+01 7ahlA 293 1.05e+01 7ahlA f.6.1.1 43812 2arpA 116 1.17e+01 1gwyA 175 1.20e+01 b.97.1.1 83356 1ixcA 294 1.20e+01 a.4.5.37,c.94.1.1 83764,83765 2ew0A 192 1.20e+01 1gpc 218 1.21e+01 1gpc b.40.4.7 25393 1aun 208 1.39e+01 1thv b.25.1.1 23900 1c8nA 276 1.41e+01 1smvA b.121.4.7 23308 1bywA 110 1.42e+01 1bywA d.110.3.6 40912 2ganA 190 1.53e+01 1ojrA 274 1.53e+01 c.74.1.1 93147 1xzwA 426 1.61e+01 1vqzA 341 1.66e+01 1rypF 233 1.66e+01 1rypF d.153.1.4 41937 1yqdA 366 1.78e+01 1gtmA 419 1.81e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1rypK 198 1.84e+01 d.153.1.4 41879 1q2lA 939 1.86e+01 1oa4A 222 1.89e+01 b.29.1.11 86731 1mjfA 281 1.90e+01 c.66.1.17 79198 2f69A 261 1.96e+01 1k8qA 377 2.01e+01 c.69.1.6 72177 1ve6A 582 2.16e+01 1yge 839 2.17e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1wrmA 165 2.18e+01 1tr8A 102 2.18e+01 2d13A 227 2.19e+01 1u9aA 160 2.22e+01 1u9aA d.20.1.1 38333 2grrA 161 2.23e+01 2fe7A 166 2.28e+01 2gjgA 248 2.32e+01 1t3yA 141 2.44e+01 2cqsA 842 2.48e+01 1rg9A 383 2.69e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2czrA 226 2.71e+01 1zd7A 159 2.76e+01 1v84A 253 2.78e+01 c.68.1.7 108419 1twyA 290 2.80e+01 1mkaA 171 2.86e+01 1mkaA d.38.1.2 38543 1n9lA 109 2.87e+01 d.110.3.6 85468 4bcl 366 2.90e+01 4bcl b.75.1.1 27968 1pl8A 356 2.91e+01 b.35.1.2,c.2.1.1 94878,94879 2ew2A 316 2.92e+01 1m65A 245 2.93e+01 c.6.3.1 84847 1ko3A 230 2.96e+01 d.157.1.1 90974 1cjxA 357 2.98e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1s1dA 331 3.00e+01 b.67.3.1 98344 1ep3B 262 3.04e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1ockA 412 3.05e+01 c.117.1.1 86802 1xdfA 157 3.08e+01 1x54A 434 3.10e+01 1qg3A 195 3.17e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 2bswA 146 3.25e+01 1yr2A 741 3.26e+01 2d0oA 610 3.27e+01 1tkeA 224 3.30e+01 1xkpC 143 3.34e+01 1z5hA 780 3.36e+01 1vj0A 380 3.44e+01 b.35.1.2,c.2.1.1 100786,100787 2bllA 345 3.45e+01 1ooeA 236 3.48e+01 c.2.1.2 87196 1w07A 659 3.54e+01 2d37A 176 3.54e+01 1b25A 619 3.65e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1bqbA 301 3.74e+01 1hyt d.92.1.2 58962 1ut9A 609 3.80e+01 a.102.1.2,b.1.18.2 99912,99913 1yna 194 3.83e+01 1axkA b.29.1.11 24335 2c4xA 260 3.84e+01 1ty0A 211 3.91e+01 b.40.2.2,d.15.6.1 107440,107441 1jwqA 179 3.92e+01 c.56.5.6 90921 1ryp1 222 3.95e+01 1ryp1 1oi0A 124 3.98e+01 c.97.3.1 93045 1fehA 574 3.99e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1vzyA 291 4.12e+01 1zt3A 80 4.16e+01 1h7zA 194 4.20e+01 1qhvA b.21.1.1 60733 1z0nA 96 4.21e+01 1i9zA 347 4.33e+01 1i9yA d.151.1.2 62102 1rlmA 271 4.36e+01 1b6g 310 4.45e+01 1b6g c.69.1.8 34661 2fvgA 340 4.47e+01 1vqoE 178 4.52e+01 1ywxA 102 4.52e+01 1o22A 170 4.53e+01 d.238.1.1 86557 2gibA 103 4.55e+01 1xgkA 352 4.62e+01 1k8kC 372 4.64e+01 b.69.4.1 68308 1x0pA 143 4.64e+01 2h1tA 188 4.65e+01 1i39A 225 4.66e+01 1ekeA c.55.3.1 61585 1q8iA 783 4.68e+01 c.55.3.5,e.8.1.1 96208,96209 1fgyA 127 4.79e+01 1faoA b.55.1.1 26976 1ryaA 160 4.79e+01 d.113.1.5 105122 2ai4A 119 4.80e+01 1msk 331 4.82e+01 1msk d.173.1.1 42495 1xqbA 247 4.84e+01 1ukgA 252 4.92e+01 b.29.1.1 99489 1vkbA 161 5.06e+01 d.269.1.1 108643 1kxoA 184 5.06e+01 b.60.1.1 84475 1ag6 99 5.14e+01 1plc b.6.1.1 22857 1bfg 146 5.15e+01 1bfg b.42.1.1 25485 1y8tA 324 5.19e+01 1hs6A 611 5.23e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2bklA 695 5.26e+01 1qh5A 260 5.31e+01 1qh5A d.157.1.2 42057 1nxuA 333 5.34e+01 c.122.1.1 86389 1t6gC 184 5.35e+01 b.29.1.11 106569 1lbvA 252 5.39e+01 e.7.1.1 73813 1zkpA 268 5.41e+01 1yt3A 375 5.43e+01 1o54A 277 5.50e+01 c.66.1.13 92482 1pbyA 489 5.54e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1xyiA 66 5.55e+01 2aq9A 262 5.56e+01 1w44A 331 5.70e+01 1zghA 260 5.75e+01 2g84A 197 5.79e+01 3eipA 84 5.80e+01 3eipA d.26.2.1 38434 1hcnB 145 5.81e+01 1hcnB g.17.1.4 44810 1cruA 454 5.93e+01 1c9uA b.68.2.1 27617 1a7tA 232 6.01e+01 1a7tA d.157.1.1 42041 1bd0A 388 6.13e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1h6lA 353 6.15e+01 b.68.3.1 60687 1k6iA 352 6.34e+01 c.2.1.2 68223 1t46A 313 6.38e+01 d.144.1.7 106397 1q2bA 434 6.41e+01 b.29.1.10 95624 2bkrA 212 6.48e+01 1gd8A 118 6.49e+01 d.188.1.1 60445 1vr6A 350 6.50e+01 1dabA 539 6.50e+01 1dabA b.80.1.7 28049 1y1pA 342 6.65e+01 2f15A 96 6.68e+01 1jkmB 361 6.86e+01 1jkmA c.69.1.2 34634 2f9zC 159 6.87e+01 1kcqA 104 6.89e+01 d.109.1.1 68449 2acaA 189 6.92e+01 1tbd 134 6.97e+01 2tbd d.89.1.1 40240 2f06A 144 6.99e+01 1xv2A 237 7.02e+01 1umwA 237 7.03e+01 d.223.1.2,d.223.1.2 99631,99632 1vplA 256 7.06e+01 2h0bA 184 7.08e+01 2gokA 429 7.10e+01 1lzlA 323 7.14e+01 c.69.1.2 78306 1x0oA 119 7.25e+01 1ir21 140 7.30e+01 1zsyA 357 7.30e+01 1mqoA 227 7.38e+01 d.157.1.1 103846 1ta9A 450 7.38e+01 1s2dA 167 7.40e+01 c.23.14.1 98377 1nlnA 204 7.46e+01 d.3.1.7 91962 1fp2A 352 7.56e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1nuyA 337 7.60e+01 e.7.1.1 86213 2a8jA 420 7.61e+01 1yrbA 262 7.64e+01 2a2cA 478 7.79e+01 1rjoA 646 7.83e+01 1yqfA 203 7.84e+01 1a6cA 513 7.87e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1p0fA 373 7.98e+01 b.35.1.2,c.2.1.1 87642,87643 2fauA 341 8.18e+01 1y7bA 542 8.30e+01 2f6uA 234 8.38e+01 1xs0A 136 8.47e+01 1njhA 119 8.54e+01 b.128.1.1 85787 1zzkA 82 8.56e+01 2aq5A 402 8.61e+01 1mhnA 59 8.71e+01 b.34.9.1 84964 2cbiA 594 8.73e+01 2fo3A 125 8.79e+01 1v1aA 309 8.89e+01 c.72.1.1 100249 1w6gA 646 9.00e+01