# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 1.03e-28 1ci0A b.45.1.1 25753 1g79A 218 3.27e-28 1ci0A b.45.1.1 25752 1nrgA 261 8.34e-25 b.45.1.1 80694 1ty9A 222 5.00e-21 1rfeA 162 2.27e-20 2fhqA 141 2.18e-16 2asfA 137 6.78e-15 1vl7A 157 4.64e-14 b.45.1.1 108732 2fg9A 178 1.25e-13 2aq6A 147 4.33e-13 1w9aA 147 5.01e-13 2arzA 247 4.26e-12 2furA 209 2.29e-10 1xhnA 184 7.98e-09 1w3oA 216 6.70e-07 1flmA 122 3.35e-05 1axj b.45.1.1 25747 1ejeA 192 3.81e-03 1ejeA b.45.1.2 25757 1aquA 297 2.74e-01 1aquA c.37.1.5 31942 1i0rA 169 1.26e+00 1i0rA b.45.1.2 61489 2d93A 134 2.90e+00 2ew2A 316 3.93e+00 1b8aA 438 4.63e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1g8aA 227 5.49e+00 c.66.1.3 90506 2etvA 346 6.18e+00 1ojrA 274 7.18e+00 c.74.1.1 93147 2gukA 120 7.76e+00 1tq4A 413 7.89e+00 c.37.1.8 107201 1bdb 277 8.11e+00 1bdb c.2.1.2 29874 1x54A 434 8.44e+00 1fp2A 352 8.63e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 2gtqA 867 9.19e+00 1llnA 262 1.06e+01 d.165.1.1 84625 1wsrA 375 1.09e+01 1zetA 388 1.32e+01 1nt2A 210 1.37e+01 c.66.1.3 86149 1x6vA 630 1.44e+01 2b0vA 153 1.49e+01 1pvtA 238 1.49e+01 c.74.1.1 95189 1q5xA 161 1.54e+01 c.8.7.1 95947 1i8dA 213 1.57e+01 b.43.4.3,b.43.4.3 61953,61954 2bbsA 290 1.62e+01 1cydA 244 1.79e+01 1cydA c.2.1.2 29825 1g0cA 364 1.83e+01 7a3hA c.1.8.3 60165 1zdyA 307 1.87e+01 1h72C 296 1.88e+01 d.14.1.5,d.58.26.1 60712,60713 1m5wA 243 1.92e+01 c.1.24.1 84836 1f1xA 322 1.96e+01 d.32.1.3,d.32.1.3 83208,83209 1vavA 222 2.02e+01 b.29.1.18 108472 1uxaA 194 2.02e+01 b.21.1.1 108091 1w8oA 601 2.04e+01 1uayA 242 2.08e+01 c.2.1.2 88390 1r6xA 395 2.11e+01 b.122.1.3,c.26.1.5 97167,97168 1sb8A 352 2.11e+01 c.2.1.2 105410 1ytaA 180 2.14e+01 1k66A 149 2.17e+01 c.23.1.1 90941 1ry9A 145 2.18e+01 d.198.1.1 98094 2ew0A 192 2.22e+01 1qmeA 702 2.41e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1rw7A 243 2.46e+01 c.23.16.2 97963 1vs0A 310 2.53e+01 1jmtA 104 2.53e+01 d.58.7.3 63180 1r2zA 274 2.70e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1wdtA 665 2.72e+01 1h3fA 432 2.72e+01 c.26.1.1,d.66.1.4 76631,76632 1l4uA 176 2.82e+01 c.37.1.2 73568 2cxaA 256 2.84e+01 1khcA 147 2.89e+01 b.34.9.2 68608 1yq2A 1024 3.12e+01 1h9mA 145 3.14e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1v0dA 329 3.18e+01 d.4.1.7 108204 2b4wA 315 3.24e+01 2fafA 608 3.31e+01 1h2cA 140 3.44e+01 b.31.1.1 83462 1jhdA 396 3.46e+01 b.122.1.3,c.26.1.5 66712,66713 1wmmA 145 3.46e+01 1iy8A 267 3.47e+01 c.2.1.2 83774 1iirA 415 3.49e+01 1iirA c.87.1.5 62453 1l0wA 580 3.50e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1alvA 173 3.65e+01 1alvA a.39.1.8 17370 2ag5A 246 3.77e+01 2ebn 289 3.84e+01 2ebn c.1.8.5 28990 1puiA 210 3.84e+01 c.37.1.8 88292 1o54A 277 3.89e+01 c.66.1.13 92482 1qvzA 237 3.98e+01 c.23.16.2 96453 1fn9A 365 4.03e+01 1fn9A d.196.1.1 59894 1gpmA 525 4.13e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1s9uA 207 4.13e+01 a.184.1.1 105390 1khbA 625 4.17e+01 c.91.1.1,c.109.1.1 68606,68607 2cvlA 124 4.20e+01 1nh1A 330 4.24e+01 e.45.1.1 91871 1kzlA 208 4.27e+01 b.43.4.3,b.43.4.3 77635,77636 1n3lA 372 4.27e+01 c.26.1.1 79966 2etjA 250 4.34e+01 2bkaA 242 4.43e+01 2bllA 345 4.44e+01 2gs8A 317 4.47e+01 1kxlA 199 4.57e+01 b.40.4.3 73155 2aheA 267 4.59e+01 1uehA 253 4.74e+01 c.101.1.1 99259 1qh5A 260 4.78e+01 1qh5A d.157.1.2 42057 1szoA 257 4.79e+01 c.14.1.3 106164 1oapA 109 4.87e+01 d.79.7.1 92706 1e1oA 504 4.91e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1e6wA 260 4.95e+01 1e6wA c.2.1.2 59326 2h0bA 184 5.04e+01 1l8nA 679 5.14e+01 c.1.8.10,d.92.2.2 84564,84565 1z0wA 207 5.25e+01 1j09A 468 5.31e+01 a.97.1.1,c.26.1.1 77025,77026 1zk4A 251 5.32e+01 1xnkA 196 5.43e+01 1vplA 256 5.44e+01 1t3yA 141 5.55e+01 1m40A 263 5.59e+01 e.3.1.1 74437 1h6fA 193 5.82e+01 b.2.5.4 70901 1j8fA 323 5.83e+01 1j8fA c.31.1.5 62738 1sx7A 164 5.88e+01 1qf9A 194 5.91e+01 1zin c.37.1.1 31848 1vfgA 390 5.92e+01 a.173.1.1,d.218.1.4 108570,108571 1e5dA 402 5.95e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1us5A 314 6.02e+01 c.94.1.1 99856 1qd9A 124 6.11e+01 1qu9A d.79.1.1 39758 1jd1A 129 6.13e+01 1qu9A d.79.1.1 62890 1iwmA 186 6.16e+01 b.125.1.2 83758 1qgiA 259 6.22e+01 1qgiA d.2.1.7 37001 1ooeA 236 6.24e+01 c.2.1.2 87196 1wy2A 351 6.31e+01 1wdiA 345 6.36e+01 1zi8A 236 6.43e+01 2fvtA 135 6.45e+01 2fcjA 119 6.46e+01 1r3dA 264 6.52e+01 1ftrA 296 6.53e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1qfjA 232 6.58e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1ki9A 192 6.63e+01 c.37.1.1 84404 1l2tA 235 6.75e+01 c.37.1.12 73514 2aq8A 269 6.77e+01 1f6bA 198 6.90e+01 c.37.1.8 64986 1vk4A 298 7.17e+01 c.72.1.1 100850 1oaa 259 7.26e+01 1oaa c.2.1.2 29829 1hrhA 136 7.35e+01 1rthA c.55.3.1 33577 1wv2A 265 7.36e+01 1vflA 356 7.40e+01 1khtA 192 7.43e+01 c.37.1.1 84401 2atpB 115 7.43e+01 1fmcA 255 7.52e+01 1cydA c.2.1.2 29856 1ukgA 252 7.54e+01 b.29.1.1 99489 1f1uA 323 7.59e+01 d.32.1.3,d.32.1.3 83200,83201 1yh1A 359 7.63e+01 2b5iB 214 7.67e+01 2abqA 306 7.70e+01 1ur1A 378 7.73e+01 c.1.8.3 99804 1p8xA 344 7.77e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 7ahlA 293 7.77e+01 7ahlA f.6.1.1 43812 1ihgA 370 7.95e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1uuqA 440 8.08e+01 c.1.8.3 100015 1cdzA 96 8.13e+01 1cdzA c.15.1.1 30925 1hs6A 611 8.19e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1k3bB 164 8.28e+01 d.3.1.1 72015 1cjwA 166 8.29e+01 1cjwA d.108.1.1 40818 1umdB 324 8.31e+01 c.36.1.7,c.48.1.2 99600,99601 1kcqA 104 8.35e+01 d.109.1.1 68449 1tzfA 259 8.36e+01 c.68.1.13 107476 1xjjA 644 8.45e+01 1elt 236 8.48e+01 5ptp b.47.1.2 26281 2g0dA 409 8.50e+01 1orrA 347 8.51e+01 c.2.1.2 93460 1yifA 533 8.53e+01 1jdpA 441 8.55e+01 c.93.1.1 62906 1xdnA 277 8.61e+01 1vqoT 120 8.69e+01 1c8nA 276 8.71e+01 1smvA b.121.4.7 23308 1ynfA 458 8.82e+01 1wisA 124 8.88e+01 1hw7A 255 8.99e+01 1i7fA d.193.1.1 61297