# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 8.59e-20 1ci0A b.45.1.1 25753 1g79A 218 1.38e-19 1ci0A b.45.1.1 25752 1rfeA 162 5.51e-19 1nrgA 261 8.83e-16 b.45.1.1 80694 1t9mA 214 1.05e-15 2fhqA 141 1.75e-15 2asfA 137 4.60e-15 1ty9A 222 5.15e-14 2aq6A 147 8.07e-14 1xxoA 147 9.08e-14 1w9aA 147 1.47e-13 1vl7A 157 1.19e-11 b.45.1.1 108732 2arzA 247 2.62e-11 2fg9A 178 4.53e-10 2furA 209 2.06e-08 1xhnA 184 4.93e-07 1w3oA 216 1.03e-06 1flmA 122 2.04e-06 1axj b.45.1.1 25747 1ejeA 192 1.03e-02 1ejeA b.45.1.2 25757 1y08A 323 3.08e-01 1lrzA 426 1.33e+00 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ko3A 230 1.82e+00 d.157.1.1 90974 1mc0A 368 1.84e+00 d.110.2.1,d.110.2.1 78937,78938 2bgiA 272 2.28e+00 2cw5A 255 2.84e+00 1am2 199 2.86e+00 1am2 b.86.1.2 28381 1llnA 262 2.88e+00 d.165.1.1 84625 2a1kA 233 2.94e+00 2d37A 176 3.48e+00 2fauA 341 3.87e+00 1qrrA 394 3.96e+00 1qrrA c.2.1.2 29824 1widA 130 4.00e+00 1e39A 571 4.23e+00 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1i24A 404 4.37e+00 c.2.1.2 83663 2bitX 165 4.58e+00 1rlmB 271 4.66e+00 1rlmA 271 4.75e+00 2bbsA 290 5.23e+00 1vzyA 291 5.40e+00 1js8A 394 5.85e+00 a.86.1.1,b.112.1.1 67219,67220 1njhA 119 6.61e+00 b.128.1.1 85787 1kssA 571 6.83e+00 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1q2lA 939 7.04e+00 1rloA 271 7.74e+00 1e6pA 499 7.75e+00 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1j5kA 89 8.77e+00 d.51.1.1 71565 1w6sA 599 8.94e+00 2phlA 397 1.02e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1gpc 218 1.02e+01 1gpc b.40.4.7 25393 2gukA 120 1.03e+01 1wsrA 375 1.10e+01 1i0rA 169 1.11e+01 1i0rA b.45.1.2 61489 1i0sA 169 1.11e+01 1i0rA b.45.1.2 61491 1zglM 209 1.25e+01 1hgxA 183 1.35e+01 1tc1A c.61.1.1 34027 1wvhA 134 1.37e+01 1ri6A 343 1.45e+01 b.69.11.1 97503 2b5oA 402 1.47e+01 1q9iA 571 1.50e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1do6A 124 1.59e+01 1do6A b.1.13.1 22361 1y0pA 571 1.66e+01 1p2hA 571 1.69e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1dqiA 124 1.78e+01 1do6A b.1.13.1 22357 1agqA 135 1.92e+01 1agqA g.17.1.2 44789 1x72A 334 1.93e+01 d.126.1.6 109495 1nnjA 271 1.95e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 2arpA 116 1.95e+01 1igwA 434 2.02e+01 c.1.12.7 62370 1xipA 388 2.04e+01 1x0pA 143 2.05e+01 1q0bA 367 2.09e+01 c.37.1.9 95502 1tdzA 272 2.14e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1u6mA 199 2.18e+01 1pjjA 271 2.21e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1mkyA 439 2.22e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1umwA 237 2.23e+01 d.223.1.2,d.223.1.2 99631,99632 1kr4A 125 2.28e+01 d.58.5.2 72889 2fvgA 340 2.43e+01 1uurA 473 2.46e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1xyiA 66 2.48e+01 1pysA 350 2.58e+01 1pysA d.104.1.1 40775 2dgkA 452 2.64e+01 1pmmA 466 2.73e+01 c.67.1.6 94901 2bllA 345 2.91e+01 2cveA 191 2.92e+01 1mjc 69 2.93e+01 1mjc b.40.4.5 25319 1xg9A 260 2.93e+01 1zghA 260 2.93e+01 2f4mA 295 2.99e+01 1wmmA 145 3.01e+01 1xmiA 291 3.01e+01 1lqtA 456 3.02e+01 c.3.1.1,c.4.1.1 74198,74199 1ye8A 178 3.04e+01 1jvnA 555 3.08e+01 c.1.2.1,c.23.16.1 67355,67356 1tr8A 102 3.10e+01 2grrA 161 3.11e+01 2db3A 434 3.11e+01 1u9jA 358 3.11e+01 1o94A 729 3.19e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1qm4A 396 3.22e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 1vclA 432 3.22e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1s72E 178 3.23e+01 d.141.1.1,d.141.1.1 105323,105324 1at0 145 3.37e+01 1at0 b.86.1.1 28374 1u9aA 160 3.40e+01 1u9aA d.20.1.1 38333 1azpA 66 3.44e+01 1azpA b.34.13.1 37467 2gp4A 628 3.48e+01 1amp 291 3.55e+01 1amp c.56.5.4 33837 1x1fA 149 3.56e+01 1n9lA 109 3.58e+01 d.110.3.6 85468 1lokA 291 3.59e+01 c.56.5.4 78122 1sqeA 109 3.60e+01 d.58.4.5 105908 1zuoA 186 3.61e+01 1ixcA 294 3.67e+01 a.4.5.37,c.94.1.1 83764,83765 1xh3A 276 3.73e+01 2tmdA 729 3.74e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1l0qA 391 3.78e+01 b.1.3.1,b.69.2.3 77644,77645 1wj9A 211 3.79e+01 1kkcA 221 3.88e+01 a.2.11.1,d.44.1.1 68660,68661 1hr0W 71 3.95e+01 1ah9 b.40.4.5 25329 1zzkA 82 3.97e+01 2anpA 291 4.08e+01 2b4wA 315 4.22e+01 1sotA 320 4.25e+01 b.36.1.4,b.47.1.1 105852,105853 1wrmA 165 4.31e+01 2fe7A 166 4.32e+01 1u0tA 307 4.34e+01 e.52.1.1 107567 1k5nA 276 4.37e+01 b.1.1.2,d.19.1.1 77266,77267 1ep3B 262 4.39e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1wv2A 265 4.42e+01 1djnA 729 4.45e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1z7bA 358 4.48e+01 1djqA 729 4.53e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1b04A 318 4.57e+01 1b04A d.142.2.2 41579 1y8oA 419 4.60e+01 1qf6A 642 4.63e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1tvjA 166 4.68e+01 1ta8A 332 4.69e+01 2av7A 275 4.71e+01 2au3A 407 4.73e+01 2bwrA 401 4.74e+01 1vqoE 178 4.77e+01 1zd7A 159 4.79e+01 1crzA 403 4.82e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1goiA 499 4.82e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1kv7A 488 4.86e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1ir21 140 4.91e+01 2cmuA 342 4.92e+01 1kwgA 645 4.93e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1vi4A 174 4.94e+01 c.8.7.1 100731 1evlA 401 5.04e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1plc 99 5.12e+01 1plc b.6.1.1 22846 1cruA 454 5.12e+01 1c9uA b.68.2.1 27617 2h1tA 188 5.12e+01 1kskA 234 5.16e+01 d.66.1.5,d.265.1.3 72920,90389 1ox6A 555 5.19e+01 c.1.2.1,c.23.16.1 87505,87506 1aisA 182 5.21e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1eyzA 392 5.32e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1jj2E 177 5.33e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1bdfA 235 5.34e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2bvpA 276 5.35e+01 1cwvA 492 5.38e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1mdbA 539 5.39e+01 e.23.1.1 79008 2i1b 153 5.40e+01 2i1b b.42.1.2 25538 1m4vA 204 5.44e+01 b.40.2.2,d.15.6.1 74459,74460 1dhr 241 5.44e+01 1dhr c.2.1.2 29832 2cbzA 237 5.52e+01 1ywxA 102 5.52e+01 1qg3A 195 5.53e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1nlnA 204 5.54e+01 d.3.1.7 91962 1ukuA 102 5.58e+01 d.58.5.2 99533 1t8sA 484 5.61e+01 c.56.2.1 106679 3fivA 116 5.65e+01 1fmb b.50.1.1 26768 2gbp 309 5.68e+01 1gca c.93.1.1 35657 2gibA 103 5.72e+01 2av1A 275 5.73e+01 2gjgA 248 5.75e+01 1eyqA 222 5.79e+01 1eypA d.36.1.1 38534 1jtdB 273 5.85e+01 b.69.5.2 67265 1heiA 451 5.87e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1jdw 423 5.89e+01 1jdw d.126.1.2 41129 1zm8A 259 5.97e+01 1r6vA 671 5.99e+01 2jdxA 385 6.03e+01 1jdw d.126.1.2 41139 2bc4A 211 6.04e+01 1ockA 412 6.04e+01 c.117.1.1 86802 1tbd 134 6.07e+01 2tbd d.89.1.1 40240 2culA 232 6.07e+01 1j9lA 247 6.09e+01 c.106.1.1 62762 1oa4A 222 6.20e+01 b.29.1.11 86731 1uthA 315 6.25e+01 c.94.1.1 108032 1cjxA 357 6.29e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1vrtA 560 6.33e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1vgyA 393 6.35e+01 c.56.5.4,d.58.19.1 100620,100621 1ylnA 252 6.37e+01 2atxA 194 6.47e+01 1repC 251 6.58e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ag6 99 6.63e+01 1plc b.6.1.1 22857 7pcy 98 6.71e+01 1plc b.6.1.1 22863 1fnuA 221 6.73e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1ta0A 197 6.74e+01 c.108.1.16 106729 1feuA 206 6.74e+01 1feuA b.53.1.1 59801 1i4fA 275 6.81e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1iwmA 186 6.82e+01 b.125.1.2 83758 1snzA 344 6.87e+01 b.30.5.4 98930 1wi1A 126 6.88e+01 1z5lA 285 6.91e+01 2gokA 429 6.96e+01 1awsA 164 6.98e+01 2cpl b.62.1.1 27431 1k07A 263 6.99e+01 d.157.1.1 77218 1rm4A 337 7.02e+01 c.2.1.3,d.81.1.1 105000,105001 1rtqA 299 7.05e+01 c.56.5.4 97819 1f7zA 233 7.08e+01 5ptp b.47.1.2 59681 1q5qA 259 7.09e+01 d.153.1.4 95904 1q74A 303 7.22e+01 c.134.1.1 96019 1pg4A 652 7.31e+01 e.23.1.1 88067 2fggA 101 7.32e+01 1tzlA 622 7.41e+01 1lugA 259 7.41e+01 b.74.1.1 91127 2bu3A 254 7.47e+01 1vr7A 142 7.58e+01 1cbs 137 7.66e+01 1hmt b.60.1.2 27201 3chbD 104 7.69e+01 3chbD b.40.2.1 24970 1avpA 204 7.70e+01 1avpA d.3.1.7 37132 1b7yA 350 7.70e+01 1pysA d.104.1.1 40776 1awqA 164 7.71e+01 2cpl b.62.1.1 27461 1ihgA 370 7.71e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1pv9A 348 7.71e+01 c.55.2.1,d.127.1.1 95157,95158 1qmyA 167 7.71e+01 1qmyA d.3.1.2 37094 4fiv 113 7.76e+01 1fmb b.50.1.1 26762 1s3rA 535 7.79e+01 1vfqA 143 7.80e+01 1q40B 219 7.81e+01 d.17.4.2 95771 1tluA 130 7.84e+01 d.156.1.2 107139 1r0wA 286 7.84e+01 c.37.1.12 96754 1b7gO 340 7.87e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 2bynA 227 7.87e+01 1kuuA 202 7.88e+01 d.153.2.1 73019 1g6oA 330 8.07e+01 1g6oA c.37.1.11 32430 1hdr 244 8.16e+01 1dhr c.2.1.2 29837 1t3yA 141 8.37e+01 2bpsA 81 8.53e+01 2a6hC 1119 8.54e+01 1r6lA 239 8.55e+01 d.14.1.4,d.101.1.1 97153,97154 1v6fA 151 8.56e+01 d.109.1.2 108395 1d8hA 311 8.57e+01 1d8iA d.63.1.1 39544 2plt 98 8.62e+01 1plc b.6.1.1 22862 1okiA 210 8.76e+01 b.11.1.1,b.11.1.1 93255,93256 1a7tA 232 8.81e+01 1a7tA d.157.1.1 42041 1h7zA 194 8.84e+01 1qhvA b.21.1.1 60733 2db2A 119 8.85e+01 2h0bA 184 8.85e+01 2ebn 289 8.88e+01 2ebn c.1.8.5 28990 1ztxE 108 8.97e+01