# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g79A 218 1.28e-16 1ci0A b.45.1.1 25752 1dnlA 199 1.37e-16 1ci0A b.45.1.1 25753 1rfeA 162 8.07e-16 2fhqA 141 4.79e-13 1nrgA 261 2.48e-12 b.45.1.1 80694 1t9mA 214 2.93e-12 2asfA 137 5.05e-12 2aq6A 147 3.07e-11 1xxoA 147 8.26e-11 1w9aA 147 9.84e-11 1ty9A 222 1.30e-10 1vl7A 157 2.01e-09 b.45.1.1 108732 2fg9A 178 4.63e-09 2arzA 247 6.71e-08 2furA 209 2.22e-06 1xhnA 184 2.28e-05 1w3oA 216 2.84e-05 1flmA 122 5.95e-04 1axj b.45.1.1 25747 1ejeA 192 5.44e-03 1ejeA b.45.1.2 25757 2etvA 346 1.61e+00 1nt2A 210 2.53e+00 c.66.1.3 86149 1q5xA 161 2.92e+00 c.8.7.1 95947 2d93A 134 4.78e+00 1y7bA 542 5.89e+00 1x7dA 350 6.19e+00 1wv2A 265 6.56e+00 2ag5A 246 6.77e+00 1i0rA 169 6.85e+00 1i0rA b.45.1.2 61489 1i0sA 169 6.96e+00 1i0rA b.45.1.2 61491 1ko3A 230 8.23e+00 d.157.1.1 90974 2bgkA 278 1.08e+01 1d3yA 301 1.09e+01 1d3yA e.12.1.1 43252 1xb2B 291 1.11e+01 1nksA 194 1.17e+01 1nksA c.37.1.1 31886 2b61A 377 1.28e+01 2bwrA 401 1.41e+01 2gukA 120 1.45e+01 1kpsB 171 1.46e+01 a.118.12.1 68787 1xmaA 145 1.51e+01 1m40A 263 1.55e+01 e.3.1.1 74437 2abqA 306 1.60e+01 1u0tA 307 1.64e+01 e.52.1.1 107567 1r6lA 239 1.65e+01 d.14.1.4,d.101.1.1 97153,97154 2br9A 234 1.68e+01 2phlA 397 1.68e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1bdb 277 1.82e+01 1bdb c.2.1.2 29874 1jdpA 441 1.86e+01 c.93.1.1 62906 1gwmA 153 1.88e+01 b.18.1.19 83348 1wxiA 275 1.88e+01 1mkmA 249 1.94e+01 a.4.5.33,d.110.2.2 79242,79243 1ermA 263 1.98e+01 1btl e.3.1.1 42690 2b05A 246 2.18e+01 1igwA 434 2.18e+01 c.1.12.7 62370 1zk4A 251 2.20e+01 1g0oA 283 2.24e+01 1ybvA c.2.1.2 60181 2aebA 322 2.24e+01 1t5yA 190 2.27e+01 b.122.1.1,d.17.6.3 106495,106496 1acc 735 2.43e+01 1acc f.11.1.1 43828 1qksA 567 2.45e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1djqA 729 2.50e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2bbsA 290 2.56e+01 2bh9A 489 2.57e+01 1djnA 729 2.62e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 2b0oE 301 2.72e+01 1btl 263 2.84e+01 1btl e.3.1.1 42691 1nxqA 251 2.87e+01 c.2.1.2 86388 1ne9A 335 2.90e+01 d.108.1.4,d.108.1.4 91839,91840 2tmdA 729 2.93e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1o94A 729 2.95e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1gttA 429 3.01e+01 d.177.1.1,d.177.1.1 70529,70530 1wrrA 301 3.05e+01 1i7oA 429 3.09e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 1wsrA 375 3.10e+01 1lrzA 426 3.14e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1s2wA 295 3.14e+01 c.1.12.7 98407 1pi4A 358 3.16e+01 e.3.1.1 94700 1ojrA 274 3.23e+01 c.74.1.1 93147 1qmeA 702 3.24e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2ffyA 358 3.32e+01 1fsyA 358 3.36e+01 1gceA e.3.1.1 60016 1so7A 382 3.38e+01 1m5wA 243 3.39e+01 c.1.24.1 84836 1ho1A 242 3.40e+01 1ho1A c.1.24.1 61097 1i8dA 213 3.41e+01 b.43.4.3,b.43.4.3 61953,61954 1rdr 461 3.45e+01 1rdr e.8.1.4 43116 1l0gA 358 3.55e+01 e.3.1.1 73400 1td5A 202 3.59e+01 d.110.2.2 106767 1r4uA 301 3.62e+01 d.96.1.4,d.96.1.4 97047,97048 1y8oA 419 3.64e+01 1gefA 123 3.67e+01 1gefA c.52.1.18 60465 1qqgA 264 3.68e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1cruA 454 3.85e+01 1c9uA b.68.2.1 27617 1cqqA 180 3.89e+01 1cqqA b.47.1.4 26422 1pq4A 291 3.90e+01 c.92.2.2 94995 1kfuL 699 3.95e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 6ldh 330 4.19e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1uox 296 4.24e+01 1uox 2ew8A 249 4.30e+01 1dpgA 485 4.45e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1sqwA 188 4.48e+01 2cb2A 318 4.67e+01 1lm6A 215 4.81e+01 d.167.1.1 84628 1jmtA 104 4.82e+01 d.58.7.3 63180 2fb1A 226 4.87e+01 1garA 212 5.05e+01 2gar c.65.1.1 34162 1iejA 332 5.10e+01 1nnt c.94.1.2 62328 1w0hA 204 5.11e+01 1ja9A 274 5.16e+01 c.2.1.2 62817 1vavA 222 5.24e+01 b.29.1.18 108472 1khtA 192 5.26e+01 c.37.1.1 84401 1iy8A 267 5.32e+01 c.2.1.2 83774 2fvgA 340 5.36e+01 1aszB 490 5.36e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1uwkA 557 5.36e+01 e.51.1.1 108065 1spxA 278 5.38e+01 c.2.1.2 98958 1sb8A 352 5.44e+01 c.2.1.2 105410 2fcjA 119 5.51e+01 1v4pA 157 5.58e+01 1g0cA 364 5.66e+01 7a3hA c.1.8.3 60165 1okcA 297 5.66e+01 f.42.1.1 93248 1ohgA 282 5.76e+01 d.183.1.1 93018 2ga9A 297 5.86e+01 2fauA 341 5.87e+01 1rm6B 324 5.90e+01 1kt6A 183 6.06e+01 b.60.1.1 84466 1xkqA 280 6.10e+01 2bjuA 453 6.17e+01 1z47A 355 6.28e+01 1e94F 449 6.32e+01 1do0A c.37.1.20 32443 1v7oA 165 6.39e+01 d.67.1.2 100480 2h0bA 184 6.42e+01 1a8y 367 6.62e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1aa6 715 6.68e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1b77A 228 6.76e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1hqsA 423 6.81e+01 1iso c.77.1.1 61154 1gegA 256 6.83e+01 1ybvA c.2.1.2 29888 2iv2X 715 6.89e+01 2fsqA 243 6.91e+01 1aquA 297 6.93e+01 1aquA c.37.1.5 31942 1hf2A 210 7.01e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1ql0A 241 7.03e+01 1qaeA d.4.1.2 37139 1qpcA 279 7.21e+01 1fgkA d.144.1.7 41685 1u0kA 288 7.25e+01 d.21.1.2,d.21.1.2 107547,107548 1r2zA 274 7.27e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1xt9A 212 7.54e+01 1rgyA 360 7.64e+01 e.3.1.1 97456 2alzA 390 7.64e+01 1cewI 108 7.73e+01 1cewI d.17.1.2 37999 1n3lA 372 7.88e+01 c.26.1.1 79966 2gar 212 7.98e+01 2gar c.65.1.1 34161 1fh6A 282 8.00e+01 1fh6A 1t56A 216 8.01e+01 a.4.1.9,a.121.1.1 106428,106429 5reqA 727 8.02e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1vehA 92 8.02e+01 1hm9A 468 8.06e+01 b.81.1.4,c.68.1.5 65866,65867 1zymA 258 8.23e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1kutA 230 8.31e+01 d.143.1.1 73017 1hxs1 302 8.54e+01 1reqA 727 8.62e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1wdtA 665 8.64e+01 1o97D 320 8.76e+01 c.26.2.3,c.31.1.2 81233,81234 1hfoA 113 8.87e+01 d.80.1.3 61006 1hbq 183 8.88e+01 1aqb b.60.1.1 27078 1zkjA 359 8.89e+01 2aieP 203 8.93e+01 1cdzA 96 8.99e+01 1cdzA c.15.1.1 30925