# TARGET T0369 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0369.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.873 0.008 0.020 0.072 0.002 0.010 0.007 0.002 0.004 0.001 0.001 2 T 0.982 0.002 0.005 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 3 D 0.985 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 4 W 0.983 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 Q 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 Q 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 A 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 L 0.985 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 D 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.951 0.001 0.002 0.041 0.001 0.001 0.002 0.001 0.001 0.001 0.001 11 H 0.889 0.003 0.007 0.090 0.001 0.004 0.005 0.001 0.002 0.001 0.001 12 V 0.605 0.052 0.066 0.252 0.005 0.005 0.005 0.001 0.007 0.001 0.001 13 G 0.645 0.012 0.027 0.049 0.012 0.009 0.113 0.091 0.002 0.040 0.001 14 V 0.695 0.122 0.059 0.089 0.020 0.005 0.003 0.001 0.004 0.001 0.001 15 G 0.787 0.029 0.042 0.050 0.023 0.010 0.011 0.019 0.004 0.024 0.001 16 V 0.891 0.039 0.037 0.012 0.008 0.007 0.001 0.001 0.004 0.001 0.001 17 R 0.968 0.003 0.007 0.013 0.001 0.004 0.001 0.001 0.001 0.001 0.001 18 T 0.949 0.006 0.005 0.026 0.002 0.005 0.001 0.001 0.005 0.001 0.001 19 T 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 D 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 L 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 I 0.981 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 R 0.984 0.001 0.004 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 L 0.631 0.002 0.005 0.355 0.001 0.001 0.002 0.002 0.001 0.001 0.001 26 I 0.112 0.149 0.569 0.081 0.007 0.043 0.004 0.001 0.034 0.001 0.001 27 Q 0.013 0.054 0.765 0.001 0.005 0.078 0.002 0.001 0.079 0.002 0.001 28 P 0.971 0.001 0.013 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.946 0.001 0.007 0.040 0.002 0.001 0.001 0.002 0.001 0.001 0.001 30 D 0.381 0.005 0.022 0.574 0.002 0.008 0.002 0.001 0.005 0.001 0.001 31 W 0.441 0.062 0.197 0.193 0.023 0.016 0.037 0.012 0.012 0.006 0.001 32 D 0.252 0.056 0.114 0.407 0.017 0.066 0.066 0.007 0.012 0.002 0.001 33 K 0.109 0.385 0.250 0.150 0.055 0.018 0.009 0.004 0.018 0.002 0.001 34 R 0.019 0.392 0.405 0.002 0.018 0.017 0.005 0.001 0.142 0.001 0.001 35 P 0.077 0.007 0.855 0.003 0.001 0.028 0.001 0.001 0.001 0.001 0.029 36 I 0.157 0.275 0.334 0.057 0.029 0.060 0.011 0.003 0.070 0.002 0.001 37 S 0.129 0.039 0.555 0.144 0.012 0.022 0.062 0.008 0.011 0.016 0.002 38 G 0.034 0.011 0.038 0.043 0.054 0.002 0.139 0.620 0.001 0.058 0.001 39 K 0.151 0.344 0.244 0.146 0.051 0.026 0.016 0.008 0.008 0.006 0.001 40 R 0.036 0.478 0.306 0.037 0.082 0.023 0.013 0.002 0.020 0.002 0.001 41 S 0.134 0.097 0.660 0.002 0.072 0.019 0.001 0.001 0.003 0.010 0.001 42 V 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 H 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 V 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 L 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 L 0.970 0.001 0.002 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 E 0.942 0.002 0.004 0.043 0.001 0.002 0.003 0.002 0.001 0.001 0.001 55 A 0.936 0.006 0.012 0.039 0.003 0.001 0.002 0.001 0.001 0.001 0.001 56 D 0.931 0.005 0.008 0.038 0.001 0.005 0.007 0.002 0.001 0.001 0.001 57 L 0.910 0.025 0.018 0.039 0.002 0.003 0.001 0.001 0.001 0.001 0.001 58 R 0.937 0.017 0.016 0.021 0.002 0.002 0.002 0.001 0.001 0.001 0.001 59 I 0.875 0.027 0.022 0.061 0.003 0.006 0.002 0.001 0.004 0.001 0.001 60 A 0.710 0.072 0.087 0.096 0.006 0.017 0.003 0.001 0.009 0.001 0.001 61 T 0.354 0.083 0.098 0.400 0.029 0.011 0.009 0.002 0.010 0.004 0.001 62 G 0.438 0.018 0.048 0.054 0.063 0.003 0.046 0.250 0.004 0.076 0.001 63 A 0.669 0.065 0.161 0.063 0.016 0.013 0.004 0.002 0.004 0.003 0.001 64 T 0.539 0.103 0.209 0.070 0.013 0.031 0.006 0.002 0.023 0.003 0.001 65 A 0.875 0.013 0.065 0.021 0.008 0.007 0.004 0.002 0.002 0.003 0.001 66 D 0.898 0.006 0.018 0.053 0.003 0.008 0.007 0.003 0.003 0.001 0.001 67 E 0.923 0.015 0.017 0.035 0.004 0.002 0.001 0.001 0.002 0.001 0.001 68 M 0.864 0.017 0.034 0.070 0.003 0.005 0.003 0.001 0.002 0.001 0.001 69 A 0.829 0.025 0.063 0.053 0.007 0.009 0.008 0.002 0.003 0.001 0.001 70 Q 0.599 0.050 0.079 0.236 0.012 0.007 0.006 0.003 0.007 0.001 0.001 71 F 0.388 0.093 0.210 0.213 0.007 0.037 0.011 0.003 0.038 0.001 0.001 72 Y 0.170 0.216 0.273 0.137 0.038 0.036 0.075 0.009 0.032 0.014 0.001 73 A 0.161 0.070 0.216 0.224 0.039 0.040 0.162 0.050 0.013 0.020 0.003 74 V 0.022 0.497 0.346 0.003 0.017 0.016 0.005 0.001 0.093 0.001 0.001 75 P 0.034 0.006 0.893 0.001 0.001 0.055 0.001 0.001 0.001 0.001 0.009 76 V 0.219 0.309 0.314 0.072 0.017 0.044 0.003 0.001 0.020 0.001 0.001 77 L 0.017 0.209 0.648 0.001 0.027 0.029 0.001 0.001 0.066 0.002 0.001 78 P 0.927 0.002 0.058 0.006 0.001 0.004 0.001 0.001 0.001 0.001 0.003 79 E 0.977 0.001 0.004 0.010 0.001 0.001 0.001 0.005 0.001 0.001 0.001 80 Q 0.964 0.001 0.003 0.028 0.001 0.002 0.001 0.001 0.001 0.001 0.001 81 L 0.986 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 V 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 D 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 R 0.986 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.983 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 D 0.992 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 Q 0.980 0.001 0.002 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 S 0.968 0.001 0.002 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 W 0.986 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 Q 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 Y 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Y 0.937 0.001 0.003 0.054 0.001 0.002 0.001 0.001 0.001 0.001 0.001 93 Q 0.975 0.003 0.007 0.010 0.001 0.002 0.002 0.001 0.001 0.001 0.001 94 D 0.969 0.001 0.005 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 R 0.916 0.005 0.009 0.063 0.002 0.001 0.001 0.001 0.001 0.001 0.001 96 L 0.937 0.004 0.012 0.037 0.001 0.003 0.003 0.001 0.002 0.001 0.001 97 M 0.927 0.009 0.017 0.037 0.001 0.005 0.002 0.001 0.001 0.001 0.001 98 A 0.908 0.016 0.031 0.030 0.006 0.002 0.002 0.001 0.001 0.001 0.001 99 D 0.754 0.010 0.040 0.163 0.002 0.014 0.006 0.001 0.008 0.001 0.001 100 F 0.479 0.069 0.118 0.292 0.011 0.015 0.004 0.001 0.010 0.001 0.001 101 S 0.408 0.062 0.110 0.260 0.029 0.043 0.051 0.014 0.015 0.007 0.001 102 T 0.249 0.309 0.162 0.190 0.052 0.013 0.005 0.003 0.016 0.002 0.001 103 E 0.178 0.273 0.231 0.152 0.054 0.041 0.022 0.007 0.040 0.003 0.001 104 T 0.092 0.330 0.291 0.114 0.085 0.038 0.013 0.005 0.026 0.005 0.001 105 T 0.100 0.349 0.301 0.068 0.082 0.038 0.017 0.005 0.034 0.006 0.001 106 Y 0.096 0.323 0.343 0.057 0.036 0.071 0.012 0.003 0.053 0.003 0.002 107 W 0.111 0.247 0.329 0.161 0.039 0.036 0.029 0.003 0.042 0.003 0.001 108 G 0.036 0.058 0.143 0.042 0.210 0.012 0.067 0.264 0.004 0.163 0.001 109 V 0.100 0.419 0.254 0.096 0.068 0.031 0.006 0.003 0.019 0.004 0.001 110 T 0.127 0.286 0.256 0.085 0.140 0.035 0.016 0.008 0.021 0.026 0.001 111 D 0.237 0.118 0.200 0.124 0.093 0.088 0.055 0.007 0.066 0.009 0.002 112 S 0.706 0.028 0.171 0.042 0.026 0.007 0.002 0.005 0.002 0.009 0.002 113 T 0.934 0.005 0.007 0.043 0.002 0.003 0.002 0.002 0.001 0.001 0.001 114 T 0.964 0.005 0.006 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 G 0.983 0.002 0.002 0.007 0.001 0.001 0.002 0.002 0.001 0.001 0.001 116 W 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 L 0.988 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 L 0.976 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 E 0.960 0.005 0.005 0.025 0.001 0.002 0.002 0.001 0.001 0.001 0.001 120 A 0.955 0.004 0.006 0.029 0.001 0.002 0.002 0.001 0.001 0.001 0.001 121 A 0.949 0.006 0.007 0.033 0.002 0.002 0.001 0.001 0.001 0.001 0.001 122 V 0.890 0.011 0.008 0.081 0.003 0.002 0.003 0.001 0.001 0.001 0.001 123 H 0.860 0.019 0.019 0.067 0.004 0.008 0.010 0.002 0.008 0.001 0.001 124 L 0.903 0.015 0.016 0.049 0.002 0.007 0.004 0.001 0.003 0.001 0.001 125 Y 0.872 0.022 0.016 0.064 0.004 0.008 0.008 0.002 0.003 0.002 0.001 126 H 0.748 0.026 0.028 0.128 0.008 0.026 0.021 0.003 0.010 0.001 0.001 127 H 0.838 0.016 0.027 0.067 0.006 0.022 0.009 0.002 0.012 0.002 0.001 128 R 0.969 0.002 0.003 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 129 S 0.982 0.001 0.001 0.011 0.001 0.001 0.002 0.001 0.001 0.001 0.001 130 Q 0.990 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 131 L 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 D 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 Y 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 L 0.977 0.002 0.002 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 136 N 0.986 0.002 0.002 0.006 0.001 0.001 0.002 0.001 0.001 0.001 0.001 137 L 0.939 0.006 0.004 0.048 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 L 0.287 0.004 0.022 0.679 0.001 0.001 0.005 0.001 0.001 0.001 0.001 139 G 0.015 0.001 0.003 0.020 0.002 0.001 0.249 0.703 0.001 0.007 0.001 140 Y 0.019 0.369 0.540 0.014 0.015 0.028 0.003 0.001 0.012 0.001 0.001 141 D 0.043 0.128 0.534 0.046 0.007 0.162 0.033 0.001 0.041 0.001 0.005 142 I 0.024 0.594 0.270 0.006 0.052 0.020 0.003 0.001 0.029 0.001 0.001 143 K 0.045 0.176 0.576 0.012 0.002 0.150 0.003 0.001 0.029 0.001 0.006 144 L 0.024 0.623 0.252 0.007 0.024 0.032 0.001 0.001 0.035 0.001 0.001 145 D 0.052 0.294 0.382 0.006 0.012 0.164 0.011 0.001 0.076 0.001 0.002 146 L 0.250 0.316 0.253 0.081 0.017 0.050 0.003 0.001 0.026 0.001 0.003 147 F 0.176 0.241 0.227 0.092 0.119 0.067 0.028 0.009 0.029 0.008 0.002 148 E 0.239 0.246 0.275 0.071 0.068 0.034 0.017 0.007 0.027 0.013 0.002