# List of top-scoring protein chains for T0369.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 6.50e-08 1bouB 302 1.06e+00 1bouB c.56.6.1 33859 1zt2A 330 1.68e+00 1rypI 222 1.85e+00 d.153.1.4 41877 1b06A 210 1.92e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1fntI 232 2.02e+00 2gf6A 135 2.23e+00 1wv2A 265 2.85e+00 1ijeB 90 3.32e+00 1b64 d.58.12.1 62488 1f60B 94 3.44e+00 1b64 d.58.12.1 39307 1yqqA 277 3.71e+00 2b7cB 94 3.86e+00 1o5hA 214 4.36e+00 a.191.1.1 92497 1uapA 154 8.15e+00 b.40.3.3 88385 2go7A 207 9.34e+00 1pi1A 185 9.88e+00 a.29.7.1 94699 1l3pA 102 1.27e+01 a.24.17.1 84520 1sngA 370 1.30e+01 1mtpA 323 1.34e+01 e.1.1.1 85107 1h2kA 349 1.39e+01 b.82.2.6 76572 1mzeA 351 1.40e+01 b.82.2.6 79694 1k8kC 372 1.45e+01 b.69.4.1 68308 2ax5A 107 1.46e+01 1xknA 355 1.51e+01 1rcjA 265 1.88e+01 e.3.1.1 97293 1ass 159 1.91e+01 1a6dA c.8.5.2 30818 2a49A 269 1.96e+01 2a3uA 270 2.00e+01 1ydwA 362 2.02e+01 1iz3A 349 2.10e+01 b.82.2.6 83831 1wa3A 205 2.14e+01 1v4nA 281 2.19e+01 1ttzA 87 2.23e+01 c.47.1.1 107309 1u3eM 174 2.57e+01 d.4.1.3,d.285.1.1 107640,107641 1szpA 321 2.87e+01 a.60.4.1,c.37.1.11 106176,106177 1go3F 107 3.03e+01 a.60.8.2 65407 1kf6B 243 3.07e+01 a.1.2.1,d.15.4.2 72397,72398 1t90A 486 3.20e+01 1n9bA 265 3.24e+01 e.3.1.1 85463 1ongA 265 3.25e+01 e.3.1.1 93356 1k8kA 418 3.43e+01 c.55.1.1,c.55.1.1 68305,68306 1kf0A 416 3.45e+01 c.86.1.1 72393 1on2A 142 3.51e+01 a.4.5.24,a.76.1.1 87103,87104 1ny8A 97 3.60e+01 d.52.6.1 103876 1souA 194 3.68e+01 c.124.1.6 105858 1lp9F 238 3.90e+01 b.1.1.1,b.1.1.2 91088,91089 1la0A 161 4.10e+01 a.39.1.5 77864 2ev0A 142 4.13e+01 1j99A 293 4.14e+01 c.37.1.5 71618 1hlm 159 4.26e+01 1hlb a.1.1.2 15626 1s4kA 120 4.32e+01 a.35.1.6 105254 1ov4A 293 4.57e+01 c.37.1.5 93581 1tdgA 265 4.69e+01 1efhA 292 4.81e+01 1aquA c.37.1.5 31948 2g23A 612 4.85e+01 1vlwA 217 4.90e+01 c.1.10.1 108868 1dg6A 191 5.32e+01 1d4vB b.22.1.1 23883 1i11A 81 5.35e+01 1hryA a.21.1.1 16431 2bd0A 244 5.74e+01 1gq6A 313 5.82e+01 c.42.1.1 70341 1qi7A 253 5.87e+01 1qi7A d.165.1.1 42210 1ugkA 138 5.93e+01 b.7.1.2 99365 1pc2A 152 5.97e+01 a.118.8.1 94427 2cu0A 486 6.19e+01 5eat 548 6.76e+01 5eat a.102.4.1,a.128.1.3 18853,19445 5eas 548 6.80e+01 5eat a.102.4.1,a.128.1.3 18852,19444 1hxaA 548 6.88e+01 a.102.4.1,a.128.1.3 83641,83642 1ehkA 562 6.90e+01 1ehkA f.24.1.1 43624 1hxgA 548 6.95e+01 a.102.4.1,a.128.1.3 83645,83646 1vjdA 416 6.98e+01 c.86.1.1 100806 1hxcA 548 7.11e+01 a.102.4.1,a.128.1.3 83643,83644 5eau 548 7.12e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1ytc 112 7.25e+01 1ycc a.3.1.1 15835 1xmeA 568 7.29e+01 1u3oA 82 7.33e+01 1lt3A 240 7.39e+01 1lt3A d.166.1.1 42230 1smpI 101 7.44e+01 1smpI b.61.2.1 27417 1sa0E 143 7.45e+01 a.137.10.1 98777 1sfcA 96 7.67e+01 1sfcA h.1.15.1 45643 1c7nA 399 7.72e+01 1d2fA c.67.1.3 34413 1zrtE 191 7.74e+01 2bdrA 175 7.78e+01 2cqnA 77 7.82e+01 1aipC 196 7.87e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1xebA 150 8.00e+01 2a55A 133 8.09e+01 2c6jA 338 8.38e+01 1jh3A 107 8.43e+01 d.66.1.4 71661 1j3gA 187 8.67e+01 d.118.1.1 77075 1s80A 278 8.88e+01 b.81.1.6 105358