# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.85e-09 1rxqA 178 7.34e-01 a.213.1.1 105118 1iw7C 1119 1.71e+00 e.29.1.1 71474 2a6hC 1119 2.52e+00 1l3pA 102 3.12e+00 a.24.17.1 84520 1fp3A 402 3.96e+00 1fp3A a.102.1.3 18842 1nw3A 416 5.07e+00 c.66.1.31 86288 1exzA 141 8.29e+00 1exzA a.26.1.2 16877 1p1xA 260 8.68e+00 c.1.10.1 104060 1wv2A 265 9.37e+00 3ladA 476 1.02e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1jclA 260 1.03e+01 c.1.10.1 66501 1f2eA 201 1.04e+01 1a0fA a.45.1.1,c.47.1.5 17745,33039 1on2A 142 1.21e+01 a.4.5.24,a.76.1.1 87103,87104 1jj7A 260 1.25e+01 c.37.1.12 63114 1fgqA 839 1.32e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1afrA 345 1.33e+01 1afrA a.25.1.2 16805 1f8nA 839 1.33e+01 1yge a.119.1.1,b.12.1.1 59703,59704 1yge 839 1.33e+01 1yge a.119.1.1,b.12.1.1 19234,23634 2g7sA 194 1.36e+01 1s5lE 84 1.46e+01 1jx4A 352 1.48e+01 d.240.1.1,e.8.1.7 90378,90379 1oq9A 363 1.50e+01 a.25.1.2 87257 1a7m 180 1.62e+01 1lki a.26.1.1 16830 1wmuB 146 1.65e+01 a.1.1.2 109417 1xm3A 264 1.87e+01 1o17A 345 1.93e+01 a.46.2.1,c.27.1.1 80765,80766 1w5rA 278 1.98e+01 1r71A 178 2.02e+01 a.4.14.1 104823 1vd5A 377 2.05e+01 a.102.1.7 108518 2b0tA 738 2.16e+01 1hmvB 440 2.18e+01 1rthA e.8.1.2 43047 1mioA 534 2.21e+01 1qguA c.92.2.3 35601 2bzlA 325 2.28e+01 1r2rA 248 2.34e+01 c.1.1.1 96875 1ipcA 217 2.39e+01 d.86.1.1 71257 1mba 147 2.40e+01 2fal a.1.1.2 15149 2axtE 84 2.42e+01 2fal 147 2.61e+01 2fal a.1.1.2 15150 1gx3A 284 2.64e+01 d.3.1.5 70678 1cpcL 172 2.66e+01 1qgwC a.1.1.3 15646 1qqtA 551 2.73e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1dm1A 146 2.75e+01 2fal a.1.1.2 15153 1mtpA 323 2.79e+01 e.1.1.1 85107 1w5cE 84 2.85e+01 5eat 548 3.08e+01 5eat a.102.4.1,a.128.1.3 18853,19445 1jboB 172 3.11e+01 a.1.1.3 84151 1pi1A 185 3.32e+01 a.29.7.1 94699 1s4kA 120 3.34e+01 a.35.1.6 105254 1dl2A 511 3.39e+01 1dl2A a.102.2.1 18844 1b79A 119 3.46e+01 1b79A a.81.1.1 18451 1ayl 541 3.47e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1z0xA 220 3.48e+01 1xwmA 217 3.53e+01 2axtB 510 3.58e+01 1phnB 172 3.64e+01 1qgwC a.1.1.3 15642 1fp2A 352 3.66e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1cpcB 172 3.66e+01 1qgwC a.1.1.3 15644 1wkyA 464 3.67e+01 1spa 396 3.67e+01 1ajsA c.67.1.1 34291 1ahxA 396 3.68e+01 1ajsA c.67.1.1 34293 1fpxA 352 3.69e+01 1fpxA a.4.5.29,c.66.1.12 59950,59951 1art 396 3.73e+01 1ajsA c.67.1.1 34285 1qisA 396 3.85e+01 1ajsA c.67.1.1 34284 1l6nA 289 3.87e+01 a.61.1.1,a.73.1.1 73624,73625 1ars 396 3.89e+01 1ajsA c.67.1.1 34287 1aiaA 396 3.91e+01 1ajsA c.67.1.1 34306 1ariA 396 3.99e+01 1ajsA c.67.1.1 34331 1l8cA 95 4.14e+01 g.53.1.1 73685 1aw1A 256 4.20e+01 1amk c.1.1.1 28515 1biqA 375 4.21e+01 1xikA a.25.1.2 16786 1h4vB 421 4.21e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1asg 396 4.30e+01 1ajsA c.67.1.1 34335 1arhA 396 4.30e+01 1ajsA c.67.1.1 34321 1pmt 203 4.42e+01 1a0fA a.45.1.1,c.47.1.5 17740,33034 2czlA 272 4.46e+01 1xdpA 687 4.50e+01 1ktpB 172 4.72e+01 a.1.1.3 72991 1tt7A 330 4.95e+01 1fs7A 485 5.05e+01 1qdbA a.138.1.3 19691 2esnA 310 5.24e+01 1ef8A 261 5.37e+01 1ef8A c.14.1.3 30921 1tn4 159 5.44e+01 1ncx a.39.1.5 17248 1nt4A 391 5.49e+01 c.60.1.2 92102 1xahA 354 5.55e+01 2genA 197 5.57e+01 1ikpA 613 5.57e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1w0uA 55 5.65e+01 1q6cA 495 5.65e+01 c.1.8.1 95970 1o5hA 214 5.72e+01 a.191.1.1 92497 1ppjH 78 5.76e+01 f.28.1.1 104264 1ej1A 190 5.81e+01 1ejhA d.86.1.1 40144 2g2dA 193 5.81e+01 1ws9A 387 5.86e+01 2cx9A 387 5.90e+01 1ju3A 583 5.91e+01 b.18.1.13,c.69.1.21 67300,67301 1b47A 304 5.97e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1hniB 427 5.99e+01 1rthA e.8.1.2 43045 2breA 219 6.04e+01 1aw2A 256 6.09e+01 1amk c.1.1.1 28523 1t4bA 367 6.09e+01 c.2.1.3,d.81.1.1 106406,106407 1l8bA 190 6.23e+01 d.86.1.1 73683 5eau 548 6.47e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1byb 495 6.51e+01 1byb c.1.8.1 28790 1rovA 857 6.51e+01 a.119.1.1,b.12.1.1 97674,97675 1jcjA 260 6.65e+01 c.1.10.1 66499 2d29A 387 6.65e+01 1wlxA 129 6.76e+01 1fmcA 255 6.87e+01 1cydA c.2.1.2 29856 1ez3A 127 6.87e+01 1dn1B a.47.2.1 17768 1ljrA 244 6.91e+01 1ljrA a.45.1.1,c.47.1.5 17707,33001 1o5zA 442 7.00e+01 c.59.1.2,c.72.2.2 92530,92531 1d2fA 390 7.12e+01 1d2fA c.67.1.3 34411 1xikA 375 7.19e+01 1xikA a.25.1.2 16784 1gsoA 431 7.19e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1yucA 255 7.22e+01 1f4lA 551 7.26e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1jogA 146 7.34e+01 a.24.16.2 77142 1br0A 120 7.37e+01 a.47.2.1 17772 1xg1A 67 7.39e+01 1g7cB 94 7.41e+01 1b64 d.58.12.1 39308 1v3hA 495 7.45e+01 c.1.8.1 108303 1allA 160 7.45e+01 1qgwC a.1.1.3 15647 1zhxA 438 7.46e+01 1wdpA 495 7.52e+01 1sw6A 327 7.61e+01 1sw6A d.211.1.1 19176 2brcA 214 7.88e+01 1sl8A 191 7.93e+01 1am1 213 8.05e+01 1yer d.122.1.1 41095 2al1A 436 8.06e+01 1f7tA 122 8.19e+01 1f7lA d.150.1.2 59667 1quuA 250 8.22e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1zzgA 415 8.24e+01 1f7lA 121 8.25e+01 1f7lA d.150.1.2 59666 1ribA 375 8.27e+01 1xikA a.25.1.2 16788 1xw2A 405 8.37e+01 1wy0A 342 8.38e+01 2amlA 373 8.40e+01 1xwtA 405 8.41e+01 1io7A 368 8.45e+01 1f4tA a.104.1.1 18971 1lkvX 232 8.50e+01 a.118.14.1 73980 2bh4X 134 8.60e+01 2fbqA 235 8.63e+01 1jqcA 375 8.64e+01 1xikA a.25.1.2 63229 2oneA 436 8.66e+01 4enl c.1.11.1,d.54.1.1 29203,38847 1ekeA 230 8.69e+01 1ekeA c.55.3.1 33572 4enl 436 8.69e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1f60B 94 8.72e+01 1b64 d.58.12.1 39307 1jfgA 374 8.78e+01 a.128.1.5 66636 1yyqA 374 8.82e+01 1eemA 241 8.83e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1av8A 340 8.85e+01 1xikA a.25.1.2 16796 2cblA 305 8.85e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1ug1A 92 8.86e+01 b.34.2.1 99360 1go4A 205 8.86e+01 d.135.1.1 70292 1oneA 436 8.92e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1ku2A 241 8.93e+01 a.4.13.1,a.177.1.1 83096,83097 1jchA 551 8.96e+01 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1jchC 551 8.96e+01 b.101.1.1,b.110.1.1,h.4.9.1 66495,66496,66497