# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.09e-08 1q1lA 401 3.01e+00 d.258.1.1 95591 1fokA 568 3.55e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16137,16138,16139,33325 1rxqA 178 3.69e+00 a.213.1.1 105118 1l3pA 102 4.81e+00 a.24.17.1 84520 1rl0A 255 9.52e+00 3ladA 476 1.02e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1qi7A 253 1.26e+01 1qi7A d.165.1.1 42210 1z3iX 644 1.42e+01 5eat 548 1.52e+01 5eat a.102.4.1,a.128.1.3 18853,19445 1b06A 210 1.53e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1z8oA 404 1.75e+01 2bhmA 164 1.84e+01 1exzA 141 1.98e+01 1exzA a.26.1.2 16877 1pmnA 364 2.01e+01 d.144.1.7 94907 2ccmA 191 2.04e+01 2h1rA 299 2.07e+01 1eupA 403 2.10e+01 1rom a.104.1.1 18967 1l6nA 289 2.11e+01 a.61.1.1,a.73.1.1 73624,73625 1c9kB 180 2.20e+01 1c9kB c.37.1.11 32364 1cbuA 180 2.28e+01 1c9kB c.37.1.11 32360 1wlxA 129 2.32e+01 1d7kA 421 2.33e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 2bb6A 414 2.34e+01 2fokA 579 2.37e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1s4kA 120 2.41e+01 a.35.1.6 105254 2a5yA 204 2.44e+01 5eau 548 2.61e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1oxa 403 2.66e+01 1f4tA a.104.1.1 18965 1xg1A 67 2.71e+01 4matA 278 2.76e+01 1c24A d.127.1.1 41150 1np8A 159 2.98e+01 a.39.1.8 92022 1alvA 173 3.07e+01 1alvA a.39.1.8 17370 1aj5A 173 3.14e+01 1alvA a.39.1.8 17367 1zroA 602 3.21e+01 2f7fA 494 3.35e+01 1d2rB 326 3.42e+01 1d2rB c.26.1.1 31573 1nw3A 416 3.52e+01 c.66.1.31 86288 1vj5A 555 3.55e+01 c.108.1.2,c.69.1.11 100799,100800 1u3oA 82 3.58e+01 1jipA 403 3.65e+01 a.104.1.1 66748 1o5hA 214 3.72e+01 a.191.1.1 92497 1dq3A 454 3.99e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1u3eM 174 4.17e+01 d.4.1.3,d.285.1.1 107640,107641 1lt4A 247 4.27e+01 1lt3A d.166.1.1 42231 1d2rA 326 4.29e+01 1d2rB c.26.1.1 31572 1pnkA 209 4.44e+01 1ajqA d.153.1.2 41839 1g7cB 94 4.44e+01 1b64 d.58.12.1 39308 1i6lA 328 4.45e+01 c.26.1.1 66041 2cs8A 108 4.63e+01 1kq4A 232 4.66e+01 d.207.1.1 68791 2g7gA 213 4.72e+01 1vbuA 328 4.82e+01 1j3gA 187 4.89e+01 d.118.1.1 77075 2fflA 756 4.89e+01 1hiwA 133 4.94e+01 1hiwA a.61.1.1 18122 2fckA 181 4.94e+01 1h2aL 567 5.01e+01 1h2rL e.18.1.1 43299 1fjgR 88 5.06e+01 1fjfR a.4.8.1 16252 1h2rL 534 5.07e+01 1h2rL e.18.1.1 43298 1iw7C 1119 5.10e+01 e.29.1.1 71474 1lt3A 240 5.14e+01 1lt3A d.166.1.1 42230 1gm7A 209 5.18e+01 d.153.1.2 65302 1i6kA 328 5.24e+01 c.26.1.1 66040 1q0rA 298 5.28e+01 c.69.1.28 95508 1zd3A 555 5.32e+01 2a6hC 1119 5.34e+01 1ajqA 209 5.35e+01 1ajqA d.153.1.2 41840 2arsA 262 5.38e+01 1ai7A 209 5.43e+01 1ajqA d.153.1.2 41845 2cqnA 77 5.43e+01 1r2rA 248 5.54e+01 c.1.1.1 96875 1yqbA 100 5.92e+01 1w9cA 321 5.95e+01 1ku2A 241 6.03e+01 a.4.13.1,a.177.1.1 83096,83097 1e3aA 260 6.04e+01 1ajqA d.153.1.2 41838 1f60B 94 6.06e+01 1b64 d.58.12.1 39307 1ywpA 64 6.27e+01 2b67A 204 6.28e+01 1o26A 232 6.35e+01 d.207.1.1 86566 1ubkL 534 6.42e+01 e.18.1.1 88422 1mzyA 333 6.48e+01 b.6.1.3,b.6.1.3 103848,103849 2cnqA 306 6.48e+01 1ymmB 198 6.52e+01 1fiqB 350 6.55e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 2frvB 536 6.63e+01 1h2rL e.18.1.1 43291 2gf6A 135 6.63e+01 1zxxA 319 6.76e+01 1ekeA 230 6.79e+01 1ekeA c.55.3.1 33572 2hmx 133 6.86e+01 1hiwA a.61.1.1 18129 1gk9A 260 7.08e+01 d.153.1.2 65246 1tam 132 7.10e+01 1hiwA a.61.1.1 18128 1a8vA 121 7.13e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1ztsA 139 7.32e+01 1gp4A 356 7.39e+01 b.82.2.1 65439 1kfuS 184 7.57e+01 a.39.1.8 68574 1cr6B 554 7.59e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 1ywzA 175 7.63e+01 1w0uA 55 7.66e+01 1y9kA 157 7.72e+01 1lepA 99 7.85e+01 1lepA b.35.1.1 24649 1bm9A 122 7.86e+01 1bm9A a.4.5.7 16116 1kqfA 1015 7.92e+01 b.52.2.2,c.81.1.1 72871,72872 1wuiL 534 7.95e+01 1i50A 1733 8.01e+01 e.29.1.2 61754 1kepA 348 8.02e+01 c.2.1.2 68536 1lp8A 254 8.04e+01 d.165.1.1 91082 1s6yA 450 8.10e+01 c.2.1.5,d.162.1.2 105314,105315 1w2xA 758 8.12e+01 c.14.1.4,c.14.1.4 109134,109135 1cvsC 225 8.32e+01 1cvsC b.1.1.4,b.1.1.4 21726,21727 1tg6A 277 8.37e+01 2a2pA 129 8.39e+01 1djxA 624 8.50e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1diiC 80 8.51e+01 1diiC a.3.1.1 15925 1bif 469 8.60e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1ayl 541 8.68e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1n81A 186 8.68e+01 a.185.1.1 85388 2c8mA 262 8.83e+01 1ithA 141 8.92e+01 1ithA a.1.1.2 15623