# TARGET T0369 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0369.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 142 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.004 0.001 0.002 0.025 0.037 0.932 2 T 0.021 0.009 0.008 0.136 0.066 0.761 3 D 0.019 0.015 0.020 0.311 0.138 0.497 4 W 0.002 0.001 0.080 0.834 0.044 0.040 5 Q 0.002 0.001 0.049 0.887 0.035 0.027 6 Q 0.001 0.001 0.050 0.909 0.030 0.010 7 A 0.001 0.001 0.025 0.939 0.024 0.010 8 L 0.001 0.001 0.017 0.961 0.016 0.005 9 D 0.001 0.001 0.028 0.950 0.017 0.005 10 R 0.001 0.001 0.027 0.945 0.019 0.009 11 H 0.002 0.001 0.024 0.913 0.032 0.027 12 V 0.005 0.001 0.012 0.892 0.046 0.044 13 G 0.005 0.001 0.013 0.896 0.042 0.044 14 V 0.011 0.001 0.017 0.895 0.040 0.036 15 G 0.010 0.002 0.013 0.911 0.031 0.034 16 V 0.003 0.001 0.006 0.956 0.016 0.018 17 R 0.003 0.001 0.007 0.959 0.013 0.017 18 T 0.002 0.001 0.007 0.964 0.012 0.014 19 T 0.001 0.001 0.004 0.973 0.009 0.012 20 R 0.001 0.001 0.005 0.981 0.009 0.004 21 D 0.002 0.001 0.006 0.977 0.011 0.004 22 L 0.001 0.001 0.007 0.976 0.010 0.007 23 I 0.001 0.001 0.025 0.958 0.013 0.003 24 R 0.001 0.001 0.022 0.945 0.022 0.009 25 L 0.002 0.001 0.021 0.697 0.079 0.200 26 I 0.003 0.014 0.007 0.132 0.111 0.733 27 Q 0.003 0.004 0.002 0.005 0.146 0.839 28 P 0.001 0.001 0.680 0.191 0.100 0.028 29 E 0.002 0.001 0.733 0.119 0.126 0.019 30 D 0.003 0.003 0.768 0.115 0.105 0.007 31 W 0.009 0.005 0.284 0.439 0.194 0.068 32 D 0.025 0.009 0.113 0.406 0.300 0.147 33 K 0.029 0.014 0.072 0.282 0.332 0.271 34 R 0.025 0.013 0.020 0.062 0.280 0.600 35 P 0.026 0.043 0.042 0.039 0.336 0.514 36 I 0.025 0.037 0.080 0.038 0.474 0.346 37 S 0.021 0.015 0.079 0.058 0.532 0.295 38 G 0.016 0.005 0.037 0.065 0.501 0.377 39 K 0.085 0.016 0.015 0.098 0.281 0.505 40 R 0.100 0.049 0.005 0.153 0.146 0.548 41 S 0.057 0.038 0.002 0.325 0.048 0.530 42 V 0.001 0.001 0.001 0.996 0.001 0.001 43 Y 0.001 0.001 0.001 0.996 0.001 0.001 44 E 0.001 0.001 0.001 0.997 0.001 0.001 45 V 0.001 0.001 0.001 0.997 0.001 0.001 46 A 0.001 0.001 0.001 0.997 0.001 0.001 47 V 0.001 0.001 0.002 0.996 0.001 0.001 48 H 0.001 0.001 0.002 0.996 0.002 0.001 49 L 0.001 0.001 0.001 0.996 0.001 0.001 50 A 0.001 0.001 0.003 0.994 0.002 0.001 51 V 0.001 0.001 0.005 0.988 0.004 0.002 52 L 0.001 0.001 0.006 0.983 0.006 0.003 53 L 0.002 0.001 0.005 0.980 0.008 0.005 54 E 0.002 0.001 0.005 0.977 0.008 0.008 55 A 0.002 0.001 0.008 0.969 0.011 0.009 56 D 0.004 0.001 0.011 0.956 0.016 0.012 57 L 0.003 0.001 0.016 0.951 0.019 0.009 58 R 0.005 0.001 0.022 0.929 0.028 0.014 59 I 0.007 0.001 0.026 0.901 0.039 0.026 60 A 0.008 0.004 0.029 0.825 0.098 0.036 61 T 0.006 0.002 0.026 0.677 0.169 0.119 62 G 0.006 0.002 0.019 0.126 0.309 0.539 63 A 0.020 0.016 0.021 0.090 0.279 0.573 64 T 0.042 0.031 0.021 0.114 0.204 0.589 65 A 0.018 0.008 0.087 0.416 0.186 0.285 66 D 0.017 0.003 0.106 0.565 0.160 0.149 67 E 0.010 0.002 0.153 0.714 0.083 0.038 68 M 0.017 0.003 0.117 0.717 0.086 0.060 69 A 0.017 0.006 0.102 0.721 0.083 0.071 70 Q 0.018 0.008 0.072 0.656 0.098 0.148 71 F 0.024 0.008 0.042 0.384 0.156 0.386 72 Y 0.021 0.009 0.013 0.183 0.150 0.623 73 A 0.035 0.018 0.018 0.103 0.188 0.639 74 V 0.029 0.007 0.010 0.041 0.203 0.710 75 P 0.046 0.018 0.013 0.050 0.160 0.713 76 V 0.054 0.036 0.007 0.039 0.138 0.725 77 L 0.023 0.013 0.003 0.048 0.090 0.823 78 P 0.001 0.001 0.015 0.930 0.020 0.033 79 E 0.001 0.001 0.013 0.977 0.007 0.003 80 Q 0.001 0.001 0.021 0.965 0.011 0.002 81 L 0.001 0.001 0.007 0.985 0.005 0.003 82 V 0.001 0.001 0.003 0.992 0.003 0.002 83 D 0.001 0.001 0.003 0.990 0.004 0.003 84 R 0.001 0.001 0.003 0.990 0.004 0.004 85 L 0.001 0.001 0.002 0.990 0.004 0.003 86 D 0.001 0.001 0.003 0.991 0.005 0.002 87 Q 0.001 0.001 0.002 0.992 0.004 0.002 88 S 0.001 0.001 0.002 0.991 0.004 0.003 89 W 0.001 0.001 0.004 0.989 0.005 0.002 90 Q 0.001 0.001 0.009 0.979 0.009 0.002 91 Y 0.001 0.001 0.010 0.963 0.017 0.009 92 Y 0.002 0.002 0.025 0.907 0.046 0.019 93 Q 0.003 0.001 0.036 0.839 0.090 0.031 94 D 0.003 0.001 0.042 0.729 0.129 0.095 95 R 0.005 0.005 0.039 0.561 0.175 0.215 96 L 0.008 0.013 0.034 0.463 0.157 0.326 97 M 0.002 0.001 0.132 0.749 0.076 0.041 98 A 0.003 0.001 0.237 0.633 0.093 0.033 99 D 0.006 0.002 0.207 0.591 0.154 0.040 100 F 0.011 0.004 0.120 0.648 0.140 0.078 101 S 0.025 0.003 0.079 0.634 0.164 0.094 102 T 0.075 0.007 0.059 0.552 0.179 0.129 103 E 0.121 0.016 0.030 0.455 0.145 0.233 104 T 0.143 0.039 0.020 0.187 0.218 0.393 105 T 0.099 0.017 0.022 0.057 0.324 0.481 106 Y 0.083 0.018 0.050 0.059 0.466 0.324 107 W 0.062 0.017 0.037 0.067 0.510 0.307 108 G 0.056 0.010 0.023 0.031 0.595 0.286 109 V 0.089 0.033 0.017 0.058 0.414 0.390 110 T 0.098 0.042 0.011 0.042 0.292 0.514 111 D 0.056 0.034 0.010 0.077 0.263 0.560 112 S 0.026 0.015 0.008 0.164 0.144 0.643 113 T 0.002 0.001 0.008 0.939 0.023 0.026 114 T 0.003 0.001 0.005 0.963 0.017 0.012 115 G 0.003 0.001 0.006 0.971 0.012 0.007 116 W 0.005 0.001 0.004 0.982 0.005 0.003 117 L 0.004 0.001 0.004 0.986 0.004 0.002 118 L 0.004 0.001 0.004 0.986 0.005 0.001 119 E 0.005 0.001 0.003 0.985 0.005 0.002 120 A 0.005 0.001 0.005 0.977 0.009 0.004 121 A 0.007 0.001 0.011 0.958 0.017 0.007 122 V 0.004 0.001 0.007 0.957 0.020 0.012 123 H 0.003 0.001 0.007 0.960 0.016 0.014 124 L 0.003 0.001 0.007 0.956 0.017 0.017 125 Y 0.002 0.001 0.011 0.952 0.020 0.014 126 H 0.001 0.001 0.010 0.960 0.017 0.010 127 H 0.001 0.001 0.014 0.961 0.013 0.010 128 R 0.001 0.001 0.010 0.979 0.006 0.004 129 S 0.001 0.001 0.008 0.977 0.008 0.007 130 Q 0.001 0.001 0.005 0.993 0.002 0.001 131 L 0.001 0.001 0.001 0.997 0.001 0.001 132 L 0.001 0.001 0.001 0.998 0.001 0.001 133 D 0.001 0.001 0.001 0.997 0.001 0.001 134 Y 0.001 0.001 0.001 0.997 0.002 0.001 135 L 0.001 0.001 0.002 0.996 0.002 0.001 136 N 0.001 0.001 0.004 0.992 0.002 0.001 137 L 0.001 0.001 0.004 0.990 0.004 0.002 138 L 0.001 0.001 0.003 0.977 0.005 0.015 139 G 0.001 0.001 0.001 0.005 0.019 0.975 140 Y 0.003 0.005 0.001 0.001 0.043 0.947 141 D 0.030 0.013 0.003 0.003 0.102 0.850 142 I 0.052 0.032 0.008 0.009 0.138 0.760 143 K 0.049 0.017 0.019 0.021 0.216 0.679 144 L 0.032 0.005 0.170 0.085 0.297 0.411 145 D 0.039 0.007 0.179 0.146 0.281 0.347 146 L 0.059 0.015 0.213 0.144 0.266 0.303 147 F 0.054 0.026 0.039 0.105 0.178 0.597 148 E 0.011 0.002 0.002 0.014 0.057 0.913