# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.76e-13 1rxqA 178 1.72e-07 a.213.1.1 105118 1wdtA 665 2.64e-01 1q7zA 566 6.26e-01 c.1.21.2,c.1.26.1 96090,96091 1qpcA 279 6.62e-01 1fgkA d.144.1.7 41685 2bcgG 453 1.17e+00 1h3fA 432 1.26e+00 c.26.1.1,d.66.1.4 76631,76632 1yyaA 250 1.60e+00 1xg7A 250 1.97e+00 1yfsA 465 1.97e+00 1sqgA 429 2.68e+00 a.79.1.3,c.66.1.38 105912,105913 1z5zA 271 2.82e+00 1rkuA 206 3.83e+00 c.108.1.11 97627 1ufoA 238 4.03e+00 c.69.1.27 99344 1gy8A 397 4.12e+00 c.2.1.2 83376 2gz4A 207 4.15e+00 1ydiA 263 4.47e+00 2fbhA 146 4.80e+00 1repC 251 4.97e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1yjsA 419 5.02e+00 2aheA 267 5.02e+00 1vjzA 341 5.20e+00 c.1.8.3 100838 1l5oA 356 5.71e+00 c.39.1.1 77711 1t2bA 397 5.89e+00 1kl1A 419 5.99e+00 c.67.1.4 72663 1r2rA 248 6.15e+00 c.1.1.1 96875 1nni1 174 6.27e+00 1pi1A 185 6.31e+00 a.29.7.1 94699 1mwpA 96 6.41e+00 1mwpA d.170.2.1 42453 2fflA 756 6.78e+00 2fgoA 82 6.85e+00 1oafA 261 7.21e+00 a.93.1.1 86734 1el5A 389 8.05e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1vbkA 307 8.95e+00 1ovlA 271 9.02e+00 a.123.1.1 87455 1syyA 346 9.34e+00 a.25.1.2 106126 1m12A 84 9.48e+00 a.64.1.1 84745 1sek 378 9.77e+00 1sek e.1.1.1 42675 1ucpA 91 9.80e+00 a.77.1.5 99186 2bngA 149 9.84e+00 1u3eM 174 1.10e+01 d.4.1.3,d.285.1.1 107640,107641 2ghcX 261 1.11e+01 1zroA 602 1.16e+01 1x42A 232 1.18e+01 1d2nA 272 1.20e+01 1d2nA c.37.1.20 32428 2gi3A 476 1.23e+01 2g7sA 194 1.33e+01 1l1lA 739 1.38e+01 c.7.1.4 73470 1u59A 287 1.41e+01 d.144.1.7 107681 2avuE 192 1.47e+01 1vb5A 276 1.49e+01 1ug3A 339 1.52e+01 1edqA 540 1.53e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2fhqA 141 1.61e+01 2arhA 203 1.61e+01 1tz9A 367 1.65e+01 c.1.15.6 107466 1v6tA 255 1.70e+01 1uqtA 482 1.73e+01 c.87.1.6 99794 1z8oA 404 1.84e+01 1ezfA 340 1.84e+01 1ezfA a.128.1.2 19440 1l3iA 192 1.85e+01 c.66.1.22 77676 1t4hA 290 1.85e+01 d.144.1.7 106420 1sheA 103 1.87e+01 d.274.1.1 105551 1xtyA 120 1.88e+01 1goiA 499 1.91e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2bh4X 134 1.91e+01 1wh5A 80 1.99e+01 1tuhA 156 2.00e+01 d.17.4.11 107345 1yz1A 174 2.02e+01 1y51A 88 2.03e+01 1p68A 102 2.06e+01 k.8.1.1 94158 1ug6A 431 2.08e+01 c.1.8.4 88490 2fm9A 215 2.10e+01 1v93A 296 2.15e+01 c.1.23.1 100532 1ab8A 220 2.15e+01 1azsA d.58.29.1 39414 1ii7A 333 2.18e+01 1ii7A d.159.1.4 62415 2f6hX 419 2.20e+01 1wcrA 103 2.22e+01 2gupA 292 2.23e+01 1iuqA 367 2.23e+01 c.112.1.1 90703 1txlA 215 2.29e+01 b.60.1.4 107429 1kmiZ 214 2.36e+01 h.4.11.1 72752 1n81A 186 2.36e+01 a.185.1.1 85388 1kv5A 250 2.38e+01 c.1.1.1 73052 1ji7A 89 2.39e+01 a.60.1.1 71682 1eb6A 177 2.40e+01 d.92.1.12 64895 1zz1A 369 2.41e+01 1tib 269 2.42e+01 3tgl c.69.1.17 34738 1z47A 355 2.51e+01 1bgp 309 2.65e+01 1bgp a.93.1.1 18690 1xo0A 324 2.65e+01 1qhdA 398 2.67e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1kbvA 327 2.70e+01 b.6.1.3,b.6.1.3 68395,68396 1onrA 316 2.72e+01 1onrA c.1.10.1 29169 1dv1A 449 2.77e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2bkkA 264 2.85e+01 1z6mA 175 2.85e+01 1o5zA 442 2.86e+01 c.59.1.2,c.72.2.2 92530,92531 1yqhA 109 2.97e+01 1b79A 119 3.09e+01 1b79A a.81.1.1 18451 1txoA 237 3.11e+01 1ib2A 349 3.16e+01 1ib2A a.118.1.8 62141 1x74A 360 3.18e+01 1xrsA 516 3.22e+01 2evrA 246 3.23e+01 1eca 136 3.23e+01 1flp a.1.1.2 15209 1jfbA 404 3.25e+01 a.104.1.1 66624 1yirA 408 3.30e+01 2fdrA 229 3.32e+01 1p90A 145 3.37e+01 c.55.5.2 94377 1pv1A 299 3.41e+01 1e9gA 286 3.41e+01 1wgjA b.40.5.1 59393 1dl2A 511 3.45e+01 1dl2A a.102.2.1 18844 1qo7A 394 3.50e+01 1qo7A c.69.1.11 34697 2cb2A 318 3.52e+01 1rypJ 204 3.52e+01 d.153.1.4 41878 1nrlA 316 3.53e+01 a.123.1.1 92091 1r4vA 171 3.62e+01 a.197.1.1 97049 1w33A 181 3.68e+01 1akhA 61 3.72e+01 1akhA a.4.1.1 15980 1f0xA 571 3.76e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1t0fA 276 3.77e+01 1w68A 390 3.81e+01 a.25.1.2 109216 2avtA 378 3.84e+01 1b06A 210 4.00e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 2g62A 325 4.01e+01 1u9cA 224 4.01e+01 1uuqA 440 4.11e+01 c.1.8.3 100015 1vfvA 366 4.16e+01 c.37.1.9 108592 1uhgA 385 4.21e+01 e.1.1.1 88491 1vj1A 363 4.29e+01 b.35.1.2,c.2.1.1 100794,100795 1exrA 148 4.32e+01 1cll a.39.1.5 17299 1io7A 368 4.32e+01 1f4tA a.104.1.1 18971 1hleA 345 4.36e+01 1ovaA e.1.1.1 42618 1w8sA 263 4.43e+01 2g8yA 385 4.43e+01 1w9hA 427 4.46e+01 1gwiA 411 4.47e+01 a.104.1.1 76364 2b2yA 187 4.52e+01 1xzzA 246 4.65e+01 2c0hA 353 4.70e+01 1u60A 310 4.80e+01 e.3.1.2 107692 1w96A 554 4.83e+01 1nw3A 416 4.95e+01 c.66.1.31 86288 2d8aA 348 4.97e+01 1ktgA 138 5.00e+01 d.113.1.1 72972 2d2eA 250 5.07e+01 1kkhA 317 5.08e+01 d.14.1.5,d.58.26.3 72645,72646 1mlwA 301 5.09e+01 d.178.1.1 79289 1n1cA 217 5.11e+01 a.184.1.1 85254 1smd 496 5.17e+01 1smd b.71.1.1,c.1.8.1 27768,28755 2faoA 309 5.26e+01 1k3sA 113 5.33e+01 d.198.1.1 68120 1j5uA 136 5.36e+01 d.208.1.1 71584 2cqsA 842 5.40e+01 1w9cA 321 5.41e+01 1mp9A 198 5.43e+01 d.129.1.1,d.129.1.1 91385,91386 1te5A 257 5.55e+01 d.153.1.1 106795 1c3pA 375 5.61e+01 1c3pA c.42.1.2 32606 1pp0A 199 5.61e+01 d.103.1.1 104211 2c12A 439 5.62e+01 1wu3I 161 5.66e+01 1jf8A 131 5.66e+01 c.44.1.1 66621 1izmA 184 5.70e+01 a.199.1.1 90725 1jl3A 139 5.74e+01 c.44.1.1 66826 1m2oA 768 5.92e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1dusA 194 5.94e+01 1dusA c.66.1.4 34182 1wkaA 147 6.02e+01 1us7B 265 6.15e+01 a.205.1.1 99858 1k20A 310 6.19e+01 c.107.1.1 68027 1woqA 267 6.20e+01 c.55.1.10,c.55.1.10 109462,109463 1pzlA 237 6.29e+01 a.123.1.1 104393 1a5t 334 6.31e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1c52 131 6.37e+01 1c52 a.3.1.1 15810 1o4sA 389 6.38e+01 c.67.1.1 86620 1e4iA 447 6.39e+01 1e70M c.1.8.4 59225 1v2zA 111 6.42e+01 a.186.1.1 108300 1ryp1 222 6.43e+01 1ryp1 1w78A 422 6.43e+01 1el6A 219 6.47e+01 1el6B d.182.1.1 42606 1bebA 162 6.48e+01 1bebA b.60.1.1 27115 1rypA 243 6.53e+01 1pmaA d.153.1.4 41932 1vkmA 297 6.57e+01 c.138.1.1 108670 1iomA 377 6.73e+01 a.103.1.1 83698 1n2aA 201 6.73e+01 a.45.1.1,c.47.1.5 91553,91554 2bk9A 153 6.73e+01 1gk9A 260 6.82e+01 d.153.1.2 65246 1p9bA 442 6.87e+01 c.37.1.10 94385 1omrA 201 6.87e+01 a.39.1.5 93349 2aieP 203 6.89e+01 1a41 234 6.90e+01 1a41 d.163.1.2 42174 1mzyA 333 6.95e+01 b.6.1.3,b.6.1.3 103848,103849 1mw7A 240 7.05e+01 e.39.1.1 79557 1ytlA 174 7.23e+01 1pieA 419 7.23e+01 d.14.1.5,d.58.26.7 94706,94707 1bco 327 7.25e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1xbbA 291 7.27e+01 1nw1A 429 7.34e+01 d.144.1.8 86286 1tf0B 53 7.37e+01 a.8.1.2 106825 1kktA 511 7.38e+01 a.102.2.1 68687 1ygmA 118 7.39e+01 1x1nA 524 7.39e+01 1jbwA 428 7.42e+01 c.59.1.2,c.72.2.2 62860,62861 1kr7A 110 7.45e+01 a.1.1.4 72890 2au5A 139 7.58e+01 1oe1A 336 7.62e+01 b.6.1.3,b.6.1.3 86891,86892 1ywnA 316 7.67e+01 1qb2A 109 7.69e+01 1qb2A a.36.1.1 17125 1u2pA 163 7.71e+01 1ohvA 472 7.73e+01 c.67.1.4 93031 1j0hA 588 7.75e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1b6rA 355 7.78e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1ceo 343 7.80e+01 1ceo c.1.8.3 28808 2boqA 331 7.84e+01 1ynpA 317 7.90e+01 1sbyA 254 7.98e+01 1ijbA 202 8.04e+01 c.62.1.1 71229 1brwA 433 8.07e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2ex0A 399 8.15e+01 2cohA 202 8.16e+01 1j8uA 325 8.21e+01 d.178.1.1 71611 1q3iA 214 8.21e+01 d.220.1.1 104524 1bw0A 416 8.25e+01 1bw0A c.67.1.1 34385 1wkcA 184 8.25e+01 1o63A 219 8.26e+01 c.94.1.1 92540 1u24A 337 8.29e+01 1g8iA 190 8.29e+01 1rec a.39.1.5 60363 2g64A 140 8.33e+01 1ywwA 85 8.46e+01 2g3kA 94 8.46e+01 2b0tA 738 8.51e+01 1vlmA 219 8.53e+01 c.66.1.41 108836 1yacA 208 8.54e+01 1yacA c.33.1.3 31757 1bouB 302 8.54e+01 1bouB c.56.6.1 33859 2b6cA 220 8.59e+01 1fe0A 68 8.65e+01 1cc8A d.58.17.1 39345 1wzcA 249 8.82e+01 1xg2B 153 8.84e+01 1cpcB 172 8.87e+01 1qgwC a.1.1.3 15644 1s9pA 227 8.92e+01 a.123.1.1 105384