# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 2.47e-10 1rxqA 178 1.80e-05 a.213.1.1 105118 1ovlA 271 1.06e+00 a.123.1.1 87455 2bh4X 134 1.08e+00 1vi0A 206 1.69e+00 a.4.1.9,a.121.1.1 100720,100721 1nni1 174 1.92e+00 2chnA 716 2.44e+00 1ufoA 238 2.73e+00 c.69.1.27 99344 1z5zA 271 3.26e+00 1m3qA 317 3.72e+00 a.96.1.3,d.129.1.2 91184,91185 2choA 716 3.94e+00 1n1cA 217 3.96e+00 a.184.1.1 85254 2fflA 756 4.35e+00 1sqgA 429 4.45e+00 a.79.1.3,c.66.1.38 105912,105913 1qw9A 502 4.53e+00 b.71.1.2,c.1.8.3 96466,96467 1w36B 1180 4.74e+00 1pw4A 451 5.22e+00 f.38.1.1 95198 1xo0A 324 5.74e+00 1o5zA 442 5.77e+00 c.59.1.2,c.72.2.2 92530,92531 3tmkA 216 5.82e+00 3tmkA c.37.1.1 31920 1vjxA 157 6.07e+00 a.25.1.1 100837 2bw3A 534 6.10e+00 1p68A 102 6.89e+00 k.8.1.1 94158 1it2A 146 7.45e+00 a.1.1.2 66365 1kkhA 317 7.52e+00 d.14.1.5,d.58.26.3 72645,72646 1z41A 338 7.69e+00 1td6A 306 7.91e+00 1xdzA 240 7.93e+00 1kv5A 250 8.51e+00 c.1.1.1 73052 3pmgA 561 9.43e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1jboB 172 9.72e+00 a.1.1.3 84151 1ykuA 136 9.80e+00 2fbhA 146 1.12e+01 1gy8A 397 1.13e+01 c.2.1.2 83376 1cpcB 172 1.23e+01 1qgwC a.1.1.3 15644 2gz4A 207 1.27e+01 1ku1A 230 1.28e+01 a.118.3.1 72996 2d83A 363 1.29e+01 1k8kE 178 1.40e+01 a.148.1.1 68311 1r2rA 248 1.47e+01 c.1.1.1 96875 1cunA 213 1.51e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1qhdA 398 1.65e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1pv1A 299 1.69e+01 1cliA 345 1.75e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1w5rA 278 1.79e+01 1q74A 303 1.79e+01 c.134.1.1 96019 1x0vA 354 1.89e+01 1o0sA 605 1.94e+01 c.2.1.7,c.58.1.3 86540,86541 1le6A 123 1.99e+01 a.133.1.2 73862 2axtF 45 2.05e+01 1yirA 408 2.05e+01 1xg7A 250 2.05e+01 1yyaA 250 2.12e+01 1n2aA 201 2.13e+01 a.45.1.1,c.47.1.5 91553,91554 2fm9A 215 2.13e+01 1zfjA 491 2.16e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1j5xA 342 2.26e+01 c.80.1.1 71591 1wy6A 172 2.27e+01 2csbA 519 2.28e+01 1q7zA 566 2.30e+01 c.1.21.2,c.1.26.1 96090,96091 1mtpA 323 2.33e+01 e.1.1.1 85107 1gx3A 284 2.40e+01 d.3.1.5 70678 1kn1B 161 2.49e+01 a.1.1.3 77456 1rh5A 436 2.50e+01 f.41.1.1 97464 1cuk 203 2.63e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1pme 380 2.75e+01 1hcl d.144.1.7 41653 2b9hA 353 2.75e+01 1txgA 335 2.85e+01 1hlb 158 2.93e+01 1hlb a.1.1.2 15625 2b0tA 738 2.96e+01 2f1kA 279 3.15e+01 1elwA 118 3.26e+01 1a17 a.118.8.1 19207 2genA 197 3.29e+01 1rz4A 226 3.32e+01 a.4.5.53,a.118.1.18 105131,105132 1xioA 261 3.36e+01 1fm0D 81 3.40e+01 1fmaD d.15.3.1 37642 1ezfA 340 3.44e+01 1ezfA a.128.1.2 19440 1z8oA 404 3.44e+01 2d8aA 348 3.46e+01 2b1eA 564 3.60e+01 1gk9A 260 3.62e+01 d.153.1.2 65246 1m2oA 768 3.66e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1v54E 109 3.67e+01 a.118.11.1 100326 2bg9A 370 3.68e+01 1yeyA 444 3.70e+01 2d5xB 146 3.76e+01 1lrv 244 3.79e+01 1lrv a.118.1.5 19146 1y791 680 3.85e+01 2evrA 246 3.86e+01 1a41 234 3.90e+01 1a41 d.163.1.2 42174 1jfbA 404 3.91e+01 a.104.1.1 66624 2c2nA 339 3.95e+01 2g7sA 194 3.95e+01 1f8rA 498 3.96e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1h3fA 432 4.00e+01 c.26.1.1,d.66.1.4 76631,76632 1szoA 257 4.01e+01 c.14.1.3 106164 1bco 327 4.07e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1i8oA 114 4.09e+01 1ycc a.3.1.1 61979 1oe8A 211 4.11e+01 a.45.1.1,c.47.1.5 86905,86906 1gpmA 525 4.11e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1j4aA 333 4.19e+01 c.2.1.4,c.23.12.1 71502,71503 2gviA 204 4.21e+01 2bptA 861 4.38e+01 1h6pA 203 4.41e+01 a.146.1.1 60690 1ffyA 917 4.44e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1to6A 371 4.46e+01 c.141.1.1 107170 1wf3A 301 4.46e+01 2fgoA 82 4.49e+01 1zz1A 369 4.53e+01 1qb2A 109 4.58e+01 1qb2A a.36.1.1 17125 1ci9A 392 4.61e+01 e.3.1.1 64767 1repC 251 4.61e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1wwkA 307 4.65e+01 1ohpA 125 4.65e+01 1d2zB 153 4.66e+01 1d2zB a.77.1.2 18439 1ui0A 205 4.76e+01 c.18.1.2 99411 1inp 400 4.92e+01 1inp e.7.1.1 42972 1q35A 320 4.95e+01 c.94.1.1 95661 5eau 548 4.95e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1q8cA 151 5.01e+01 a.79.1.2 96202 1d0cA 444 5.06e+01 d.174.1.1 64769 1ki1B 352 5.08e+01 a.87.1.1,b.55.1.1 72497,72498 2avuE 192 5.09e+01 2bzlA 325 5.15e+01 1e3dB 542 5.19e+01 1h2rL e.18.1.1 59189 1l5oA 356 5.29e+01 c.39.1.1 77711 1tib 269 5.30e+01 3tgl c.69.1.17 34738 1reqB 637 5.43e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1z8uA 102 5.52e+01 1lki 180 5.64e+01 1lki a.26.1.1 16829 1gs9A 165 5.67e+01 a.24.1.1 83313 1oi7A 288 5.69e+01 c.2.1.8,c.23.4.1 87049,87050 1j0hA 588 5.83e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2bkxA 242 5.87e+01 1efyA 350 5.95e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1ka2A 499 5.95e+01 d.92.1.5 77305 1ug3A 339 6.07e+01 2btdA 210 6.10e+01 1x6iA 91 6.18e+01 1yge 839 6.20e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1nw3A 416 6.21e+01 c.66.1.31 86288 1va6A 518 6.26e+01 1uyrA 737 6.29e+01 c.14.1.4,c.14.1.4 100188,100189 1ji7A 89 6.29e+01 a.60.1.1 71682 1wdtA 665 6.33e+01 1d2fA 390 6.39e+01 1d2fA c.67.1.3 34411 1aisB 200 6.41e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1z3eA 132 6.42e+01 1wthD 391 6.43e+01 1xtyA 120 6.43e+01 1ad1A 266 6.57e+01 1aj2 c.1.21.1 29668 2bcgG 453 6.59e+01 1m2kA 249 6.61e+01 c.31.1.5 84754 1tx9A 151 6.64e+01 1bed 181 6.65e+01 1fvkA c.47.1.13 90330 1aky 221 6.67e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1v7zA 260 6.76e+01 c.125.1.1 100488 1e1oA 504 6.79e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1fcyA 236 6.81e+01 2lbd a.123.1.1 19282 1w8iA 156 6.88e+01 1poiA 317 6.89e+01 1poiA c.124.1.2 34153 1z8sA 146 6.91e+01 1b79A 119 6.93e+01 1b79A a.81.1.1 18451 1b25A 619 6.95e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1pvmA 184 6.99e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1kaeA 434 7.03e+01 c.82.1.2 72247 2bgcA 238 7.05e+01 2gokA 429 7.07e+01 1po5A 476 7.13e+01 a.104.1.1 94963 1wq3A 322 7.23e+01 1g8eA 116 7.25e+01 1g8eA a.145.1.1 60346 2bkkA 264 7.28e+01 1j8mF 297 7.29e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1us7B 265 7.31e+01 a.205.1.1 99858 1mw9X 592 7.32e+01 e.10.1.1 91480 1r71A 178 7.35e+01 a.4.14.1 104823 1ez3A 127 7.42e+01 1dn1B a.47.2.1 17768 1uqtA 482 7.51e+01 c.87.1.6 99794 2arhA 203 7.52e+01 2c52B 59 7.53e+01 1uf3A 228 7.59e+01 d.159.1.6 99317 1ks9A 291 7.59e+01 a.100.1.7,c.2.1.6 68857,68858 1mba 147 7.60e+01 2fal a.1.1.2 15149 1zejA 293 7.62e+01 1xg0C 177 7.65e+01 1ifqA 138 7.66e+01 1ifqA d.110.4.1 62350 1irdB 146 7.70e+01 a.1.1.2 66287 2ctdA 96 7.81e+01 1lst 239 7.93e+01 1lst c.94.1.1 35755 1u53A 196 7.98e+01 1txlA 215 8.09e+01 b.60.1.4 107429 1e1hA 287 8.17e+01 d.92.1.7 83167 1qpcA 279 8.19e+01 1fgkA d.144.1.7 41685 2amlA 373 8.40e+01 1ie9A 259 8.41e+01 1db1A a.123.1.1 62318 2afdA 88 8.45e+01 1ht6A 405 8.52e+01 b.71.1.1,c.1.8.1 83629,83630 1ta8A 332 8.54e+01 1v4aA 440 8.56e+01 a.24.16.4,d.218.1.9 108350,108351 1nijA 318 8.58e+01 c.37.1.10,d.237.1.1 85741,85742 2g0dA 409 8.70e+01 1vns 609 8.74e+01 1vns a.111.1.3 19061 1yarH 217 8.75e+01 1y9iA 178 8.88e+01 2arzA 247 8.91e+01