# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.24e-12 1rxqA 178 1.04e-06 a.213.1.1 105118 1rkuA 206 3.74e-01 c.108.1.11 97627 1yfsA 465 3.75e-01 1pujA 282 2.31e+00 c.37.1.8 88294 1ovlA 271 3.17e+00 a.123.1.1 87455 1fwxA 595 3.52e+00 b.6.1.4,b.69.3.1 60069,60070 2gz4A 207 4.29e+00 2bh4X 134 4.49e+00 1pv1A 299 5.30e+00 1qpcA 279 5.73e+00 1fgkA d.144.1.7 41685 1yjsA 419 6.38e+00 1sqgA 429 6.76e+00 a.79.1.3,c.66.1.38 105912,105913 1kl1A 419 6.77e+00 c.67.1.4 72663 1x3lA 440 7.08e+00 1yw3A 208 7.50e+00 1knvA 293 9.69e+00 c.52.1.7 68707 1el5A 389 9.83e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1wdtA 665 1.02e+01 1wkaA 147 1.08e+01 1g3mA 294 1.09e+01 c.37.1.5 83268 1xg7A 250 1.09e+01 1ufoA 238 1.29e+01 c.69.1.27 99344 2bnlA 136 1.35e+01 1yyqA 374 1.35e+01 2bcgG 453 1.53e+01 1mwpA 96 1.64e+01 1mwpA d.170.2.1 42453 1rlr 761 1.69e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1t2bA 397 1.79e+01 1gwiA 411 1.81e+01 a.104.1.1 76364 2aheA 267 1.85e+01 1xrsA 516 1.94e+01 1wu3I 161 2.11e+01 1h3fA 432 2.14e+01 c.26.1.1,d.66.1.4 76631,76632 1yn9A 169 2.15e+01 2awpA 198 2.25e+01 2fbhA 146 2.30e+01 2boqA 331 2.49e+01 1w68A 390 2.51e+01 a.25.1.2 109216 2azjA 289 2.53e+01 1zroA 602 2.58e+01 1x74A 360 2.65e+01 2arhA 203 2.68e+01 1zb1A 392 2.80e+01 1uocA 289 2.85e+01 c.55.3.9 99686 2ex0A 399 2.92e+01 1zghA 260 2.95e+01 1r6dA 337 3.43e+01 c.2.1.2 97148 2g64A 140 3.54e+01 1u60A 310 3.56e+01 e.3.1.2 107692 1vlmA 219 3.62e+01 c.66.1.41 108836 1jfbA 404 3.77e+01 a.104.1.1 66624 1n81A 186 3.85e+01 a.185.1.1 85388 1z8oA 404 3.91e+01 1q35A 320 4.00e+01 c.94.1.1 95661 2fm9A 215 4.07e+01 2g8yA 385 4.27e+01 1vkkA 154 4.35e+01 d.109.1.2 108669 2fflA 756 4.36e+01 1pi1A 185 4.46e+01 a.29.7.1 94699 1o5hA 214 4.47e+01 a.191.1.1 92497 1bm9A 122 4.55e+01 1bm9A a.4.5.7 16116 1wh5A 80 4.58e+01 1r6uA 437 4.71e+01 c.26.1.1 97163 1ug6A 431 4.76e+01 c.1.8.4 88490 1i4wA 353 4.81e+01 c.66.1.24 66028 1onrA 316 4.83e+01 1onrA c.1.10.1 29169 2aieP 203 4.93e+01 1o9rA 162 5.00e+01 a.25.1.1 86706 1u9cA 224 5.02e+01 1sek 378 5.02e+01 1sek e.1.1.1 42675 1ytlA 174 5.38e+01 1bt3A 345 5.38e+01 1bt3A a.86.1.2 18507 1pmi 440 5.40e+01 1pmi b.82.1.3 28114 1txlA 215 5.43e+01 b.60.1.4 107429 1gk9A 260 5.46e+01 d.153.1.2 65246 1l3iA 192 5.52e+01 c.66.1.22 77676 1p90A 145 5.61e+01 c.55.5.2 94377 2g3kA 94 5.68e+01 1k8kE 178 5.74e+01 a.148.1.1 68311 1bsmA 201 5.76e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1vj1A 363 5.77e+01 b.35.1.2,c.2.1.1 100794,100795 1xjdA 345 5.80e+01 1uhvA 500 5.99e+01 b.71.1.2,c.1.8.3 99402,99403 2bg1A 494 6.04e+01 1g2iA 166 6.05e+01 1g2iA c.23.16.2 31438 1lrv 244 6.10e+01 1lrv a.118.1.5 19146 1hz6A 72 6.14e+01 2ptl d.15.7.1 61429 1u59A 287 6.18e+01 d.144.1.7 107681 1nni1 174 6.19e+01 2bgiA 272 6.37e+01 1y51A 88 6.67e+01 1zo0A 126 6.89e+01 1ryiA 382 6.90e+01 1djxA 624 7.04e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1o0sA 605 7.09e+01 c.2.1.7,c.58.1.3 86540,86541 1uuqA 440 7.30e+01 c.1.8.3 100015 1ci9A 392 7.34e+01 e.3.1.1 64767 1ix9A 205 7.36e+01 a.2.11.1,d.44.1.1 76899,76900 1ozhA 566 7.36e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2f96A 224 7.40e+01 2fiyA 309 7.50e+01 1wkbA 810 7.56e+01 1l1lA 739 7.63e+01 c.7.1.4 73470 1wuiL 534 7.68e+01 1oe1A 336 7.68e+01 b.6.1.3,b.6.1.3 86891,86892 1f5mA 180 7.79e+01 1f5mB d.110.2.1 40895 1w33A 181 7.79e+01 1rl0A 255 7.82e+01 1qo2A 241 7.84e+01 1qo2A c.1.2.1 28533 1ylmA 144 7.87e+01 2gviA 204 7.93e+01 1txoA 237 7.96e+01 1of5A 221 8.16e+01 d.17.4.2 86933 1ubkL 534 8.18e+01 e.18.1.1 88422 1t0fA 276 8.21e+01 2ceyA 306 8.38e+01 1fp3A 402 8.40e+01 1fp3A a.102.1.3 18842 1xzzA 246 8.52e+01 1ohvA 472 8.55e+01 c.67.1.4 93031 1vg8A 207 8.62e+01 c.37.1.8 108606 1repC 251 8.75e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1zz1A 369 8.87e+01 1p4oA 322 8.93e+01 d.144.1.7 87775