# TARGET T0369 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0369.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 124 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.022 0.664 0.001 0.009 0.134 0.001 0.001 0.003 0.097 0.051 0.003 0.014 2 T 0.001 0.012 0.560 0.001 0.006 0.258 0.001 0.001 0.001 0.135 0.020 0.004 0.004 3 D 0.001 0.003 0.079 0.001 0.009 0.854 0.001 0.001 0.001 0.028 0.026 0.001 0.001 4 W 0.001 0.001 0.012 0.001 0.007 0.961 0.001 0.001 0.001 0.003 0.015 0.001 0.001 5 Q 0.001 0.001 0.005 0.001 0.002 0.987 0.001 0.001 0.001 0.002 0.003 0.001 0.001 6 Q 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 7 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 8 L 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 9 D 0.001 0.001 0.001 0.001 0.004 0.985 0.001 0.001 0.001 0.001 0.008 0.001 0.001 10 R 0.001 0.001 0.002 0.001 0.005 0.963 0.001 0.001 0.001 0.002 0.028 0.001 0.001 11 H 0.001 0.001 0.005 0.001 0.009 0.943 0.001 0.001 0.001 0.003 0.040 0.001 0.001 12 V 0.001 0.001 0.015 0.001 0.008 0.910 0.001 0.001 0.001 0.010 0.055 0.001 0.001 13 G 0.001 0.002 0.031 0.001 0.018 0.807 0.001 0.001 0.001 0.026 0.113 0.001 0.001 14 V 0.001 0.002 0.042 0.001 0.023 0.779 0.001 0.001 0.002 0.042 0.107 0.001 0.001 15 G 0.001 0.004 0.119 0.001 0.016 0.744 0.001 0.001 0.004 0.046 0.062 0.001 0.003 16 V 0.001 0.001 0.023 0.001 0.006 0.950 0.001 0.001 0.001 0.009 0.009 0.001 0.001 17 R 0.001 0.001 0.006 0.001 0.006 0.965 0.001 0.001 0.001 0.004 0.017 0.001 0.001 18 T 0.001 0.001 0.005 0.001 0.004 0.971 0.001 0.001 0.001 0.002 0.017 0.001 0.001 19 T 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 20 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 D 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 L 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 23 I 0.001 0.001 0.001 0.001 0.005 0.964 0.001 0.001 0.001 0.002 0.028 0.001 0.001 24 R 0.001 0.001 0.001 0.001 0.006 0.820 0.001 0.001 0.001 0.002 0.171 0.001 0.001 25 L 0.001 0.001 0.007 0.001 0.011 0.457 0.001 0.001 0.001 0.015 0.510 0.001 0.001 26 I 0.001 0.004 0.241 0.001 0.001 0.025 0.001 0.001 0.001 0.711 0.017 0.001 0.001 27 Q 0.001 0.006 0.913 0.001 0.002 0.005 0.001 0.001 0.001 0.069 0.004 0.001 0.001 28 P 0.001 0.001 0.013 0.001 0.359 0.522 0.001 0.001 0.001 0.006 0.099 0.001 0.001 29 E 0.001 0.002 0.007 0.001 0.446 0.429 0.001 0.001 0.001 0.007 0.108 0.001 0.001 30 D 0.001 0.001 0.022 0.001 0.453 0.438 0.001 0.001 0.001 0.006 0.079 0.001 0.001 31 W 0.001 0.017 0.082 0.001 0.257 0.513 0.001 0.001 0.001 0.021 0.103 0.001 0.004 32 D 0.001 0.009 0.122 0.003 0.172 0.266 0.001 0.001 0.001 0.059 0.361 0.003 0.002 33 K 0.001 0.017 0.260 0.002 0.118 0.178 0.001 0.001 0.003 0.211 0.188 0.001 0.020 34 R 0.001 0.011 0.530 0.001 0.004 0.017 0.001 0.001 0.002 0.409 0.014 0.009 0.003 35 P 0.001 0.030 0.790 0.001 0.009 0.023 0.001 0.001 0.005 0.072 0.061 0.001 0.008 36 I 0.001 0.032 0.685 0.001 0.021 0.029 0.001 0.001 0.005 0.159 0.060 0.004 0.002 37 S 0.001 0.013 0.277 0.002 0.072 0.057 0.001 0.001 0.003 0.169 0.402 0.001 0.004 38 G 0.001 0.007 0.159 0.001 0.059 0.049 0.001 0.001 0.002 0.207 0.512 0.002 0.003 39 K 0.001 0.026 0.444 0.001 0.034 0.090 0.001 0.001 0.008 0.254 0.128 0.006 0.008 40 R 0.001 0.062 0.503 0.001 0.005 0.049 0.001 0.001 0.012 0.320 0.028 0.012 0.009 41 S 0.001 0.048 0.630 0.001 0.003 0.181 0.001 0.001 0.007 0.095 0.010 0.002 0.024 42 V 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 43 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 48 H 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.008 0.001 0.001 49 L 0.001 0.001 0.003 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.009 0.001 0.001 50 A 0.001 0.001 0.004 0.001 0.001 0.985 0.001 0.001 0.001 0.002 0.007 0.001 0.001 51 V 0.001 0.001 0.004 0.001 0.001 0.980 0.001 0.001 0.001 0.002 0.010 0.001 0.001 52 L 0.001 0.001 0.014 0.001 0.002 0.954 0.001 0.001 0.002 0.006 0.018 0.001 0.002 53 L 0.001 0.001 0.023 0.001 0.004 0.926 0.001 0.001 0.002 0.014 0.025 0.001 0.002 54 E 0.002 0.001 0.025 0.001 0.011 0.902 0.001 0.001 0.004 0.017 0.028 0.003 0.006 55 A 0.005 0.002 0.021 0.001 0.006 0.907 0.001 0.001 0.004 0.009 0.026 0.009 0.008 56 D 0.004 0.002 0.019 0.001 0.004 0.935 0.001 0.001 0.001 0.004 0.021 0.002 0.005 57 L 0.005 0.002 0.012 0.001 0.013 0.936 0.001 0.001 0.001 0.004 0.014 0.002 0.008 58 R 0.003 0.001 0.008 0.002 0.027 0.893 0.001 0.001 0.001 0.007 0.046 0.006 0.003 59 I 0.007 0.001 0.012 0.001 0.041 0.830 0.001 0.001 0.003 0.008 0.086 0.002 0.007 60 A 0.007 0.008 0.061 0.001 0.037 0.748 0.002 0.002 0.006 0.023 0.088 0.006 0.011 61 T 0.001 0.009 0.052 0.002 0.014 0.345 0.001 0.002 0.008 0.047 0.507 0.007 0.004 62 G 0.001 0.004 0.124 0.005 0.008 0.044 0.001 0.001 0.002 0.156 0.651 0.001 0.003 63 A 0.001 0.019 0.535 0.001 0.006 0.025 0.001 0.001 0.005 0.336 0.049 0.018 0.005 64 T 0.001 0.049 0.713 0.001 0.012 0.039 0.001 0.001 0.011 0.108 0.036 0.002 0.027 65 A 0.001 0.014 0.256 0.003 0.134 0.406 0.001 0.001 0.004 0.064 0.115 0.001 0.003 66 D 0.001 0.005 0.121 0.001 0.172 0.518 0.001 0.001 0.002 0.057 0.118 0.002 0.003 67 E 0.001 0.004 0.097 0.001 0.175 0.614 0.001 0.001 0.002 0.040 0.060 0.002 0.004 68 M 0.001 0.008 0.193 0.001 0.091 0.609 0.001 0.001 0.002 0.040 0.044 0.004 0.006 69 A 0.002 0.008 0.136 0.003 0.106 0.550 0.001 0.001 0.002 0.062 0.110 0.008 0.012 70 Q 0.004 0.011 0.099 0.002 0.067 0.549 0.001 0.001 0.003 0.054 0.181 0.011 0.018 71 F 0.003 0.014 0.192 0.003 0.068 0.405 0.001 0.001 0.004 0.081 0.204 0.008 0.017 72 Y 0.001 0.012 0.316 0.002 0.036 0.241 0.001 0.001 0.005 0.137 0.224 0.012 0.013 73 A 0.001 0.016 0.441 0.002 0.033 0.146 0.001 0.001 0.006 0.170 0.151 0.008 0.025 74 V 0.001 0.010 0.548 0.001 0.011 0.044 0.001 0.001 0.008 0.325 0.031 0.012 0.009 75 P 0.001 0.013 0.739 0.001 0.009 0.034 0.001 0.001 0.007 0.102 0.078 0.003 0.015 76 V 0.001 0.064 0.643 0.001 0.009 0.032 0.001 0.001 0.008 0.139 0.089 0.007 0.009 77 L 0.001 0.017 0.828 0.001 0.003 0.027 0.001 0.001 0.002 0.109 0.008 0.001 0.006 78 P 0.001 0.001 0.018 0.001 0.012 0.953 0.001 0.001 0.001 0.004 0.013 0.001 0.001 79 E 0.001 0.001 0.001 0.001 0.006 0.987 0.001 0.001 0.001 0.001 0.005 0.001 0.001 80 Q 0.001 0.001 0.001 0.001 0.011 0.983 0.001 0.001 0.001 0.001 0.003 0.001 0.001 81 L 0.001 0.001 0.003 0.001 0.005 0.987 0.001 0.001 0.001 0.001 0.004 0.001 0.001 82 V 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 83 D 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 84 R 0.001 0.001 0.002 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.009 0.001 0.001 85 L 0.001 0.001 0.004 0.001 0.001 0.985 0.001 0.001 0.001 0.003 0.007 0.001 0.001 86 D 0.001 0.001 0.002 0.001 0.002 0.986 0.001 0.001 0.001 0.002 0.008 0.001 0.001 87 Q 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.002 0.013 0.001 0.001 88 S 0.001 0.001 0.005 0.001 0.002 0.981 0.001 0.001 0.001 0.002 0.010 0.001 0.001 89 W 0.001 0.001 0.003 0.001 0.003 0.986 0.001 0.001 0.001 0.002 0.005 0.001 0.001 90 Q 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 91 Y 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.011 0.001 0.001 92 Y 0.001 0.001 0.009 0.001 0.003 0.964 0.001 0.001 0.001 0.004 0.019 0.001 0.001 93 Q 0.001 0.001 0.009 0.001 0.009 0.938 0.001 0.001 0.001 0.007 0.035 0.001 0.001 94 D 0.001 0.001 0.008 0.001 0.010 0.923 0.001 0.001 0.001 0.007 0.051 0.001 0.001 95 R 0.001 0.001 0.018 0.001 0.011 0.908 0.001 0.001 0.001 0.012 0.050 0.001 0.001 96 L 0.001 0.002 0.065 0.001 0.012 0.841 0.001 0.001 0.001 0.024 0.054 0.001 0.001 97 M 0.001 0.001 0.047 0.001 0.044 0.829 0.001 0.001 0.001 0.015 0.060 0.001 0.001 98 A 0.001 0.001 0.020 0.001 0.046 0.802 0.001 0.001 0.001 0.015 0.115 0.001 0.001 99 D 0.001 0.001 0.048 0.001 0.071 0.708 0.001 0.001 0.001 0.016 0.154 0.001 0.001 100 F 0.001 0.008 0.102 0.001 0.095 0.654 0.001 0.001 0.003 0.027 0.105 0.001 0.004 101 S 0.001 0.006 0.120 0.004 0.097 0.463 0.001 0.001 0.004 0.070 0.222 0.006 0.006 102 T 0.002 0.007 0.168 0.004 0.089 0.361 0.001 0.002 0.011 0.138 0.190 0.011 0.017 103 E 0.002 0.016 0.358 0.003 0.031 0.203 0.001 0.002 0.024 0.241 0.073 0.023 0.023 104 T 0.002 0.046 0.511 0.005 0.020 0.123 0.002 0.003 0.038 0.130 0.052 0.013 0.055 105 T 0.003 0.039 0.511 0.009 0.035 0.102 0.002 0.005 0.043 0.101 0.080 0.038 0.033 106 Y 0.006 0.044 0.364 0.008 0.072 0.102 0.003 0.004 0.032 0.110 0.175 0.015 0.065 107 W 0.003 0.027 0.318 0.009 0.057 0.056 0.002 0.002 0.011 0.150 0.323 0.019 0.021 108 G 0.001 0.018 0.432 0.004 0.018 0.018 0.001 0.001 0.004 0.299 0.178 0.013 0.014 109 V 0.001 0.009 0.595 0.001 0.003 0.005 0.001 0.001 0.002 0.343 0.028 0.006 0.008 110 T 0.001 0.018 0.583 0.002 0.011 0.026 0.001 0.001 0.002 0.203 0.131 0.004 0.019 111 D 0.001 0.030 0.461 0.002 0.016 0.132 0.001 0.001 0.003 0.241 0.093 0.012 0.009 112 S 0.001 0.021 0.354 0.001 0.018 0.438 0.001 0.001 0.002 0.099 0.038 0.005 0.022 113 T 0.002 0.003 0.037 0.001 0.009 0.904 0.001 0.001 0.001 0.016 0.020 0.003 0.004 114 T 0.001 0.001 0.005 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.003 0.001 0.001 115 G 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 W 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 121 A 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 122 V 0.001 0.001 0.001 0.001 0.002 0.971 0.001 0.001 0.001 0.002 0.022 0.001 0.001 123 H 0.001 0.001 0.006 0.001 0.004 0.910 0.001 0.001 0.001 0.008 0.071 0.001 0.001 124 L 0.001 0.001 0.027 0.001 0.010 0.866 0.001 0.001 0.001 0.008 0.086 0.001 0.001 125 Y 0.001 0.004 0.060 0.001 0.025 0.789 0.001 0.001 0.003 0.027 0.085 0.001 0.003 126 H 0.001 0.005 0.062 0.001 0.024 0.740 0.001 0.001 0.002 0.058 0.100 0.003 0.003 127 H 0.001 0.004 0.054 0.001 0.014 0.788 0.001 0.001 0.003 0.062 0.067 0.002 0.004 128 R 0.001 0.001 0.024 0.001 0.004 0.921 0.001 0.001 0.001 0.018 0.028 0.001 0.001 129 S 0.001 0.001 0.007 0.001 0.002 0.974 0.001 0.001 0.001 0.006 0.009 0.001 0.001 130 Q 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 131 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 136 N 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.010 0.001 0.001 137 L 0.001 0.001 0.002 0.001 0.003 0.931 0.001 0.001 0.001 0.001 0.062 0.001 0.001 138 L 0.001 0.001 0.012 0.001 0.002 0.273 0.001 0.001 0.001 0.014 0.698 0.001 0.001 139 G 0.001 0.001 0.033 0.001 0.002 0.008 0.001 0.001 0.001 0.058 0.897 0.001 0.001 140 Y 0.001 0.011 0.817 0.001 0.002 0.004 0.001 0.001 0.016 0.122 0.015 0.007 0.006 141 D 0.001 0.064 0.679 0.001 0.004 0.003 0.002 0.002 0.102 0.078 0.014 0.009 0.042 142 I 0.001 0.031 0.714 0.006 0.009 0.005 0.003 0.001 0.065 0.102 0.024 0.018 0.021 143 K 0.001 0.012 0.845 0.005 0.016 0.004 0.001 0.002 0.035 0.032 0.022 0.007 0.019 144 L 0.001 0.011 0.292 0.009 0.409 0.028 0.001 0.001 0.016 0.101 0.101 0.008 0.022 145 D 0.003 0.008 0.260 0.010 0.327 0.043 0.001 0.001 0.013 0.142 0.147 0.026 0.018 146 L 0.005 0.024 0.200 0.003 0.335 0.045 0.003 0.003 0.019 0.082 0.185 0.012 0.085 147 F 0.006 0.043 0.454 0.009 0.036 0.031 0.002 0.001 0.013 0.208 0.080 0.082 0.034 148 E 0.001 0.010 0.829 0.003 0.013 0.010 0.001 0.001 0.002 0.074 0.022 0.009 0.026