# List of top-scoring protein chains for T0369.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.32e-11 1rxqA 178 2.64e-04 a.213.1.1 105118 1b06A 210 4.41e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1poiB 260 4.84e+00 1poiB c.124.1.3 34155 1opkA 495 4.85e+00 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 2fo0A 495 6.94e+00 1ufoA 238 7.32e+00 c.69.1.27 99344 1oplA 537 8.34e+00 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1u3eM 174 9.04e+00 d.4.1.3,d.285.1.1 107640,107641 1yf2A 425 1.06e+01 1ituA 369 1.27e+01 c.1.9.7 71423 1o5hA 214 1.34e+01 a.191.1.1 92497 1sngA 370 1.39e+01 1mtpA 323 1.42e+01 e.1.1.1 85107 1xd7A 145 1.46e+01 a.4.5.55 109566 1yarH 217 1.59e+01 2avtA 378 1.77e+01 1szpA 321 1.87e+01 a.60.4.1,c.37.1.11 106176,106177 1nijA 318 2.62e+01 c.37.1.10,d.237.1.1 85741,85742 1s4dA 280 2.81e+01 1qgrA 876 2.85e+01 1qgrA a.118.1.1 19119 1txoA 237 3.03e+01 1qw9A 502 3.13e+01 b.71.1.2,c.1.8.3 96466,96467 1pz3A 502 3.13e+01 b.71.1.2,c.1.8.3 95396,95397 1xrsA 516 3.48e+01 1e6vA 553 3.67e+01 1mroA a.89.1.1,d.58.31.2 18527,39445 1rliA 184 3.77e+01 c.23.5.6 97647 1su1A 208 3.88e+01 d.159.1.7 106016 1cz8V 94 3.91e+01 1vpfA g.17.1.1 44765 1fltV 98 4.05e+01 1vpfA g.17.1.1 44751 1katV 99 4.09e+01 g.17.1.1 77309 1ujdA 117 4.23e+01 b.36.1.1 99454 2aazA 317 4.27e+01 1vppV 102 4.28e+01 1vpfA g.17.1.1 44753 1uklA 876 4.31e+01 a.118.1.1 99493 1eayC 74 4.87e+01 1eayC d.58.24.1 39386 1lm6A 215 4.98e+01 d.167.1.1 84628 1rc6A 261 5.01e+01 b.82.1.11 97287 2gswA 182 5.03e+01 1kxvC 121 5.06e+01 b.1.1.1 73190 2aieP 203 5.06e+01 1uepA 103 5.08e+01 b.36.1.1 99270 1mkkA 96 5.14e+01 g.17.1.1 79240 1wkbA 810 5.19e+01 1wb7A 210 5.27e+01 1mjvA 96 5.29e+01 g.17.1.1 79214 1qpdA 279 5.38e+01 1fmk d.144.1.7 41687 1rcjA 265 5.47e+01 e.3.1.1 97293 2a49A 269 5.55e+01 2aiaA 203 5.56e+01 1ab2 109 5.57e+01 1lckA d.93.1.1 40506 2a3uA 270 5.58e+01 1bygA 278 5.78e+01 1fmk d.144.1.7 41705 1wb8A 210 5.92e+01 1f0cA 305 5.93e+01 1c8oA e.1.1.1 42676 1xbfA 140 6.08e+01 d.273.1.1 109538 1wcuA 153 6.28e+01 1i0eA 381 6.36e+01 a.83.1.1,d.128.1.2 83655,83656 1t06A 235 6.40e+01 a.118.1.17 106194 1l0oC 243 6.44e+01 a.4.13.2 73405 1bdg 451 6.58e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1qpcA 279 6.62e+01 1fgkA d.144.1.7 41685 1m93B 245 6.64e+01 1mkgA 96 6.67e+01 g.17.1.1 79234 1sbxA 106 7.05e+01 a.6.1.4 105414 1u59A 287 7.45e+01 d.144.1.7 107681 1za6B 344 7.46e+01 1nni1 174 7.58e+01 1hlb 158 7.78e+01 1hlb a.1.1.2 15625 1lqvA 193 7.98e+01 d.19.1.1 74206 1m5xA 170 8.02e+01 d.95.2.1 84844 1c8oA 300 8.18e+01 1c8oA e.1.1.1 42677 2b9lA 394 8.27e+01 1d3yA 301 8.33e+01 1d3yA e.12.1.1 43252 1d6sA 322 8.37e+01 1oasA c.79.1.1 35295 1ypzF 230 8.38e+01 1fcjA 322 8.45e+01 1oasA c.79.1.1 35289 1z34A 235 8.74e+01 2f0aA 98 8.80e+01 1k9aA 450 8.85e+01 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1osvA 230 8.92e+01 a.123.1.1 93500 1ot7A 229 8.93e+01 a.123.1.1 93505