# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 3.17e-13 1rxqA 178 1.75e-07 a.213.1.1 105118 1vjxA 157 6.79e-01 a.25.1.1 100837 1xo0A 324 7.50e-01 1n2aA 201 1.08e+00 a.45.1.1,c.47.1.5 91553,91554 1mba 147 1.20e+00 2fal a.1.1.2 15149 1a0fA 201 1.25e+00 1a0fA a.45.1.1,c.47.1.5 17737,33031 1jboB 172 1.49e+00 a.1.1.3 84151 1hlb 158 1.63e+00 1hlb a.1.1.2 15625 1p68A 102 1.75e+00 k.8.1.1 94158 4crxA 322 1.95e+00 4crxA a.60.9.1,d.163.1.1 18095,42155 2cblA 305 2.13e+00 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1phnB 172 2.27e+00 1qgwC a.1.1.3 15642 1f44A 324 2.65e+00 a.60.9.1,d.163.1.1 64982,64983 2fflA 756 2.76e+00 1v54E 109 2.77e+00 a.118.11.1 100326 1t0qA 498 2.78e+00 a.25.1.2 106220 1g7oA 215 3.11e+00 1g7oA a.45.1.1,c.47.1.5 60332,60333 1y8qB 640 3.25e+00 1fxxA 482 3.52e+00 1fxxA c.55.3.5 33726 1lrv 244 3.69e+00 1lrv a.118.1.5 19146 1d0cA 444 3.73e+00 d.174.1.1 64769 2occE 109 3.74e+00 2occE a.118.11.1 19224 1z8sA 146 3.83e+00 1rfmA 344 3.83e+00 c.122.1.1 97385 2g0dA 409 3.92e+00 1cpcB 172 3.96e+00 1qgwC a.1.1.3 15644 1yvhA 329 4.55e+00 2g7sA 194 4.72e+00 1d1vA 444 5.01e+00 1nseA d.174.1.1 59101 1ed5A 444 5.01e+00 1nseA d.174.1.1 42530 1it2A 146 5.55e+00 a.1.1.2 66365 1ufoA 238 5.87e+00 c.69.1.27 99344 1ks9A 291 5.98e+00 a.100.1.7,c.2.1.6 68857,68858 2d2mB 142 6.08e+00 1r71A 178 6.48e+00 a.4.14.1 104823 1vi0A 206 6.50e+00 a.4.1.9,a.121.1.1 100720,100721 1w5cF 44 6.81e+00 1ab8A 220 6.99e+00 1azsA d.58.29.1 39414 1s5lF 45 7.42e+00 1ezfA 340 7.74e+00 1ezfA a.128.1.2 19440 1b25A 619 8.43e+00 1b25A a.110.1.1,d.152.1.1 19044,41796 1sqgA 429 8.86e+00 a.79.1.3,c.66.1.38 105912,105913 2bw3A 534 9.08e+00 1kn1B 161 9.14e+00 a.1.1.3 77456 2axtF 45 9.33e+00 1zxiB 809 9.73e+00 1qj2B 809 1.06e+01 1qj2B 1n62B 809 1.10e+01 d.41.1.1,d.133.1.1 80092,80093 1u2zA 433 1.12e+01 c.66.1.31 107626 1ia9A 280 1.13e+01 1ia9A d.144.1.5 62113 1go3F 107 1.15e+01 a.60.8.2 65407 1adoA 363 1.18e+01 1fbaA c.1.10.1 29124 2bh4X 134 1.19e+01 1zaiA 363 1.21e+01 1u6tA 121 1.26e+01 1ngnA 155 1.26e+01 a.96.1.2 85697 1tvoA 368 1.27e+01 1kktA 511 1.30e+01 a.102.2.1 68687 1a41 234 1.30e+01 1a41 d.163.1.2 42174 1gqiA 708 1.32e+01 c.1.8.10,d.92.2.2 76279,76280 1fiy 883 1.34e+01 1fiy c.1.12.3 29307 1e3dB 542 1.38e+01 1h2rL e.18.1.1 59189 1iyxA 432 1.38e+01 c.1.11.1,d.54.1.1 83815,83816 1cot 129 1.40e+01 1ycc a.3.1.1 15899 1po5A 476 1.42e+01 a.104.1.1 94963 1oe8A 211 1.44e+01 a.45.1.1,c.47.1.5 86905,86906 1txoA 237 1.44e+01 1wxiA 275 1.46e+01 1ggzA 148 1.47e+01 a.39.1.5 70176 1z5zA 271 1.47e+01 1xwmA 217 1.48e+01 1azsB 212 1.52e+01 1azsA d.58.29.1 39423 2gyqA 175 1.53e+01 1xd7A 145 1.70e+01 a.4.5.55 109566 1mhyD 521 1.70e+01 1mhyD a.25.1.2 16780 1zx4A 192 1.81e+01 1jqnA 883 1.82e+01 c.1.12.3 77159 1le6A 123 1.93e+01 a.133.1.2 73862 1us7B 265 2.01e+01 a.205.1.1 99858 1yz1A 174 2.02e+01 1mtyD 512 2.15e+01 1mhyD a.25.1.2 16742 1top 162 2.17e+01 1ncx a.39.1.5 17223 2essA 248 2.22e+01 1y5iC 225 2.25e+01 1fecA 490 2.27e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1r2fA 319 2.35e+01 1r2fA a.25.1.2 16800 1p3wA 404 2.37e+01 c.67.1.3 87752 1txgA 335 2.38e+01 1mc2A 122 2.41e+01 a.133.1.2 74622 1nd4A 264 2.46e+01 d.144.1.6 91815 1w5cB 510 2.49e+01 1oy3D 282 2.53e+01 d.211.1.1 87554 1xg0C 177 2.54e+01 1qgwC 177 2.58e+01 1qgwC a.1.1.3 15673 1fezA 256 2.68e+01 1fezA c.108.1.3 43343 1tn4 159 2.70e+01 1ncx a.39.1.5 17248 2b9hA 353 2.70e+01 2arzA 247 2.89e+01 1t5oA 351 2.93e+01 c.124.1.5 106459 1w5rA 278 2.94e+01 1lki 180 3.01e+01 1lki a.26.1.1 16829 1xahA 354 3.01e+01 1whrA 124 3.03e+01 1vjzA 341 3.04e+01 c.1.8.3 100838 1l3iA 192 3.11e+01 c.66.1.22 77676 1q74A 303 3.12e+01 c.134.1.1 96019 1xrsA 516 3.15e+01 1jlvA 209 3.19e+01 a.45.1.1,c.47.1.5 71729,71730 1q06A 135 3.21e+01 a.6.1.3 95493 2afdA 88 3.26e+01 1scfA 273 3.36e+01 1exzA a.26.1.2 16873 1yucA 255 3.45e+01 1ad4A 266 3.52e+01 1aj2 c.1.21.1 29670 3erk 364 3.54e+01 1hcl d.144.1.7 41654 1tfe 145 3.56e+01 1tfe d.43.1.1 38680 2genA 197 3.58e+01 1mtpA 323 3.65e+01 e.1.1.1 85107 1tk1A 260 3.67e+01 d.248.1.1 107066 1nvvS 481 3.72e+01 a.117.1.1 86279 1t95A 240 3.75e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1x0vA 354 3.80e+01 1gx3A 284 3.80e+01 d.3.1.5 70678 1s4qA 228 3.88e+01 c.37.1.1 98507 1bolA 222 3.91e+01 1bolA d.124.1.1 41120 1va6A 518 3.93e+01 1bkdS 439 3.97e+01 1bkdS a.117.1.1 19111 1f8rA 498 3.97e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1zoyA 622 3.97e+01 6paxA 133 4.02e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1g3mA 294 4.08e+01 c.37.1.5 83268 1w6tA 444 4.09e+01 1ad3A 452 4.16e+01 1ad3A c.82.1.1 35335 1qmqA 414 4.19e+01 1phd a.104.1.1 18907 2gz4A 207 4.26e+01 1ad1A 266 4.28e+01 1aj2 c.1.21.1 29668 1qpoA 284 4.28e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 6gsvA 217 4.28e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 2fbqA 235 4.33e+01 1fm0D 81 4.37e+01 1fmaD d.15.3.1 37642 1h6pA 203 4.44e+01 a.146.1.1 60690 1reoA 486 4.50e+01 c.3.1.2,d.16.1.5 97325,97326 1n55A 251 4.50e+01 c.1.1.1 80007 1j8mF 297 4.51e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m9xC 146 4.59e+01 a.73.1.1 84907 1vmaA 306 4.70e+01 a.24.13.1,c.37.1.10 108887,108888 1j8yF 297 4.84e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1fs7A 485 4.88e+01 1qdbA a.138.1.3 19691 1cqxA 403 4.89e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1a0cA 438 4.89e+01 1a0cA c.1.15.3 29529 1tq4A 413 4.90e+01 c.37.1.8 107201 1pme 380 4.95e+01 1hcl d.144.1.7 41653 2csgA 424 4.95e+01 2axtB 510 4.97e+01 1m6kA 251 5.00e+01 e.3.1.1 78695 2guhA 214 5.02e+01 1q16C 225 5.06e+01 f.21.3.1 95549 1u67A 600 5.13e+01 a.93.1.2,g.3.11.1 107697,107698 1y0kA 209 5.18e+01 1lrzA 426 5.42e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ykhB 132 5.44e+01 1yrcA 414 5.46e+01 1eemA 241 5.49e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2b1eA 564 5.52e+01 1otkA 249 5.53e+01 a.25.1.2 93521 1nhyA 219 5.56e+01 a.45.1.1,c.47.1.5 80520,80521 1aisB 200 5.62e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1p9qC 256 5.67e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1fm2A 169 5.71e+01 1fm2A d.153.1.2 59877 1g8eA 116 5.73e+01 1g8eA a.145.1.1 60346 1dcqA 278 5.77e+01 1dcqA d.211.1.1,g.45.1.1 19178,45326 1c52 131 5.88e+01 1c52 a.3.1.1 15810 1rqlA 267 5.94e+01 c.108.1.3 97750 1esc 306 5.95e+01 1esc c.23.10.1 31334 1ykwA 435 5.98e+01 1hcuA 503 6.00e+01 a.102.2.1 65796 2ex2A 458 6.04e+01 1om0A 274 6.09e+01 c.1.8.5 87058 1h8eD 482 6.13e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2ck3D 482 6.14e+01 1urvA 190 6.18e+01 1ut0A 190 6.18e+01 a.1.1.2 108012 2bykA 140 6.22e+01 1yt3A 375 6.24e+01 2aheA 267 6.25e+01 1ia8A 289 6.27e+01 1ia8A d.144.1.7 62112 1pv1A 299 6.30e+01 1f5qB 252 6.32e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1qe3A 489 6.40e+01 2bce c.69.1.1 34630 1ppa 121 6.52e+01 1poa a.133.1.2 19550 1tl9A 339 6.61e+01 1a0aA 63 6.65e+01 1a0aA a.38.1.1 17138 1ovlA 271 6.67e+01 a.123.1.1 87455 1dz4A 414 6.69e+01 1phd a.104.1.1 18903 2au5A 139 6.69e+01 1gk9B 557 6.72e+01 1uohA 226 6.76e+01 d.211.1.1 99690 1oo4A 111 6.76e+01 d.93.1.1 87185 1wbpA 397 6.80e+01 1k8kE 178 6.82e+01 a.148.1.1 68311 2h6dA 276 6.88e+01 1vbuA 328 6.90e+01 1e3aB 560 6.94e+01 1ajqB 1z8uA 102 6.99e+01 2gnoA 305 7.07e+01 1w8iA 156 7.11e+01 1tx4A 198 7.13e+01 1tx4A a.116.1.1 19098 1z8oA 404 7.13e+01 1yruB 74 7.15e+01 1qcwA 410 7.15e+01 1gox c.1.4.1 28622 1re9A 414 7.19e+01 1q4gA 553 7.21e+01 a.93.1.2,g.3.11.1 95789,95790 1r2rA 248 7.26e+01 c.1.1.1 96875 1rlkA 117 7.32e+01 c.131.1.1 97651 1y37A 304 7.33e+01 2a65A 519 7.33e+01 1apyA 162 7.33e+01 1apyA d.153.1.5 42004 1ithA 141 7.43e+01 1ithA a.1.1.2 15623 1n2fA 142 7.48e+01 d.227.1.1 79853 1ckiA 317 7.54e+01 1csn d.144.1.7 41660 2aa1B 146 7.58e+01 1spgB 147 7.66e+01 1cg5B a.1.1.2 15588 1m7vA 363 7.68e+01 d.174.1.1 78748 1d2zB 153 7.70e+01 1d2zB a.77.1.2 18439 1uteA 313 7.74e+01 1uteA d.159.1.1 42078 1rzl 91 7.79e+01 1rzl a.52.1.1 17817 1yc5A 246 7.84e+01 1zejA 293 7.89e+01 1m6jA 261 7.90e+01 c.1.1.1 78693 1xrtA 467 7.96e+01 2bnkA 67 7.96e+01 1zin 217 7.97e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2gwdA 449 7.99e+01 1g5hA 454 8.02e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1o0sA 605 8.02e+01 c.2.1.7,c.58.1.3 86540,86541 1mw9X 592 8.10e+01 e.10.1.1 91480 1z3eA 132 8.18e+01 2gokA 429 8.28e+01 2fkzA 155 8.29e+01 1ih8A 271 8.29e+01 2nsyA c.26.2.1 62377 1nlwB 76 8.31e+01 a.38.1.1 80634 1z8fA 228 8.32e+01 1iwlA 182 8.33e+01 b.125.1.1 83757 1e9gA 286 8.36e+01 1wgjA b.40.5.1 59393 1s8iA 121 8.38e+01 a.133.1.2 98735 1twiA 434 8.40e+01 b.49.2.3,c.1.6.1 107399,107400 1xrhA 351 8.48e+01 1d4oA 184 8.63e+01 1d4oA c.31.1.4 31748 2gtsA 86 8.67e+01 1ituA 369 8.75e+01 c.1.9.7 71423 830cA 168 8.76e+01 1ck7A d.92.1.11 40400 1ta3A 274 8.83e+01 c.1.8.5 106731 1vgmA 378 8.98e+01