# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 4.93e-12 1rxqA 178 3.85e-06 a.213.1.1 105118 1xrsA 516 1.01e+00 1ufoA 238 1.75e+00 c.69.1.27 99344 1vjxA 157 2.39e+00 a.25.1.1 100837 1y8qB 640 2.55e+00 1hlb 158 2.67e+00 1hlb a.1.1.2 15625 1a0fA 201 2.70e+00 1a0fA a.45.1.1,c.47.1.5 17737,33031 1it2A 146 2.72e+00 a.1.1.2 66365 1p68A 102 2.95e+00 k.8.1.1 94158 1nni1 174 3.17e+00 1ituA 369 3.38e+00 c.1.9.7 71423 1n2aA 201 3.50e+00 a.45.1.1,c.47.1.5 91553,91554 1sqgA 429 4.16e+00 a.79.1.3,c.66.1.38 105912,105913 2fflA 756 5.15e+00 1xo0A 324 5.23e+00 1w5cF 44 6.30e+00 1x0vA 354 6.34e+00 1f44A 324 7.58e+00 a.60.9.1,d.163.1.1 64982,64983 2axtF 45 7.66e+00 1d0cA 444 7.83e+00 d.174.1.1 64769 2b9hA 353 8.10e+00 1d1vA 444 8.15e+00 1nseA d.174.1.1 59101 2bh4X 134 8.27e+00 1lrv 244 8.52e+00 1lrv a.118.1.5 19146 1phnB 172 8.62e+00 1qgwC a.1.1.3 15642 1vi0A 206 8.74e+00 a.4.1.9,a.121.1.1 100720,100721 1z8sA 146 8.81e+00 1cot 129 9.20e+00 1ycc a.3.1.1 15899 2g7sA 194 9.22e+00 1g7oA 215 9.35e+00 1g7oA a.45.1.1,c.47.1.5 60332,60333 4crxA 322 9.42e+00 4crxA a.60.9.1,d.163.1.1 18095,42155 1jboB 172 9.47e+00 a.1.1.3 84151 1yf2A 425 1.03e+01 1kn1B 161 1.08e+01 a.1.1.3 77456 1otkA 249 1.22e+01 a.25.1.2 93521 1ed5A 444 1.23e+01 1nseA d.174.1.1 42530 1lki 180 1.28e+01 1lki a.26.1.1 16829 1txoA 237 1.31e+01 1txgA 335 1.32e+01 1a41 234 1.35e+01 1a41 d.163.1.2 42174 1td6A 306 1.37e+01 1s5lF 45 1.42e+01 1yz1A 174 1.55e+01 1c52 131 1.60e+01 1c52 a.3.1.1 15810 1fntc 245 1.62e+01 1zx4A 192 1.64e+01 1u2zA 433 1.69e+01 c.66.1.31 107626 1h6pA 203 1.72e+01 a.146.1.1 60690 1p3wA 404 1.80e+01 c.67.1.3 87752 2bkkA 264 1.83e+01 1ia9A 280 1.86e+01 1ia9A d.144.1.5 62113 1g3mA 294 1.92e+01 c.37.1.5 83268 1z5zA 271 1.97e+01 1mhyD 521 2.03e+01 1mhyD a.25.1.2 16780 1r2fA 319 2.11e+01 1r2fA a.25.1.2 16800 1mba 147 2.20e+01 2fal a.1.1.2 15149 1fiy 883 2.49e+01 1fiy c.1.12.3 29307 1jqnA 883 2.51e+01 c.1.12.3 77159 1eemA 241 2.74e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1u6tA 121 2.74e+01 2d83A 363 2.76e+01 1ab8A 220 2.83e+01 1azsA d.58.29.1 39414 1oe8A 211 2.87e+01 a.45.1.1,c.47.1.5 86905,86906 1q74A 303 3.04e+01 c.134.1.1 96019 2g0dA 409 3.14e+01 1maz 221 3.22e+01 1maz f.1.4.1 43393 1yirA 408 3.25e+01 1s5lB 510 3.40e+01 1ggzA 148 3.41e+01 a.39.1.5 70176 2bw3A 534 3.57e+01 1s5jA 847 3.59e+01 1whrA 124 3.60e+01 1jmsA 381 3.61e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1zoyD 103 3.61e+01 1aisB 200 3.68e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2axtB 510 3.68e+01 1o0sA 605 3.81e+01 c.2.1.7,c.58.1.3 86540,86541 1wkyA 464 3.85e+01 1mtpA 323 3.97e+01 e.1.1.1 85107 2ctdA 96 4.06e+01 1mvwC 147 4.20e+01 i.15.1.1 79525 1xwmA 217 4.23e+01 2ac3A 316 4.23e+01 1w5rA 278 4.24e+01 1d2zB 153 4.28e+01 1d2zB a.77.1.2 18439 1ezfA 340 4.37e+01 1ezfA a.128.1.2 19440 1zfjA 491 4.41e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1v54E 109 4.43e+01 a.118.11.1 100326 1gcvB 136 4.43e+01 1cg5B a.1.1.2 15589 1pv1A 299 4.56e+01 2gyqA 175 4.66e+01 1a0aA 63 4.70e+01 1a0aA a.38.1.1 17138 1b25A 619 4.76e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2gz4A 207 4.90e+01 1gk9B 557 4.94e+01 1cpcB 172 4.96e+01 1qgwC a.1.1.3 15644 1ngnA 155 5.01e+01 a.96.1.2 85697 1ffyA 917 5.03e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1q06A 135 5.04e+01 a.6.1.3 95493 1cunA 213 5.05e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1go3F 107 5.10e+01 a.60.8.2 65407 1fm0D 81 5.11e+01 1fmaD d.15.3.1 37642 2h6dA 276 5.19e+01 1tq4A 413 5.26e+01 c.37.1.8 107201 1oohA 126 5.26e+01 a.39.2.1 93383 1nijA 318 5.28e+01 c.37.1.10,d.237.1.1 85741,85742 1fecA 490 5.33e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2amyA 246 5.39e+01 1e3aB 560 5.42e+01 1ajqB 1ykhB 132 5.47e+01 1qpoA 284 5.47e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 2b0tA 738 5.48e+01 2gtsA 86 5.50e+01 2ac5A 316 5.57e+01 1bolA 222 5.60e+01 1bolA d.124.1.1 41120 1rf8B 100 5.69e+01 a.210.1.1 97371 1zz2A 360 5.71e+01 1a0cA 438 5.74e+01 1a0cA c.1.15.3 29529 1eqcA 394 5.74e+01 1cz1A c.1.8.3 28811 2fupA 168 5.77e+01 1lst 239 5.83e+01 1lst c.94.1.1 35755 1w9cA 321 5.84e+01 1uf2A 1019 5.91e+01 e.28.1.2 99289 1oo4A 111 5.95e+01 d.93.1.1 87185 2b61A 377 5.98e+01 1mwmA 320 6.00e+01 c.55.1.1,c.55.1.1 79580,79581 1t0qA 498 6.00e+01 a.25.1.2 106220 1r71A 178 6.08e+01 a.4.14.1 104823 1iyxA 432 6.09e+01 c.1.11.1,d.54.1.1 83815,83816 2bg9A 370 6.19e+01 1f8rA 498 6.23e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1l3iA 192 6.26e+01 c.66.1.22 77676 1aquA 297 6.32e+01 1aquA c.37.1.5 31942 1pme 380 6.49e+01 1hcl d.144.1.7 41653 1g8mA 593 6.50e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 3erk 364 6.54e+01 1hcl d.144.1.7 41654 1n1cA 217 6.59e+01 a.184.1.1 85254 1j8mF 297 6.72e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ox0A 430 6.74e+01 c.95.1.1,c.95.1.1 87495,87496 1vin 268 6.76e+01 1vin a.74.1.1,a.74.1.1 18354,18355 1y9qA 192 6.79e+01 1gx3A 284 6.80e+01 d.3.1.5 70678 1j8yF 297 6.82e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1uteA 313 6.86e+01 1uteA d.159.1.1 42078 1t95A 240 6.87e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1yvhA 329 6.87e+01 1xkfA 133 6.98e+01 1nvvS 481 7.01e+01 a.117.1.1 86279 1u67A 600 7.03e+01 a.93.1.2,g.3.11.1 107697,107698 830cA 168 7.07e+01 1ck7A d.92.1.11 40400 2bwvA 440 7.08e+01 2genA 197 7.12e+01 1az9 457 7.24e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1qhfA 240 7.25e+01 1qhfA c.60.1.1 33960 1adoA 363 7.26e+01 1fbaA c.1.10.1 29124 1vmaA 306 7.32e+01 a.24.13.1,c.37.1.10 108887,108888 1wl9A 440 7.35e+01 1w8iA 156 7.41e+01 1xahA 354 7.42e+01 2essA 248 7.43e+01 2occE 109 7.47e+01 2occE a.118.11.1 19224 1azsB 212 7.50e+01 1azsA d.58.29.1 39423 1sdiA 213 7.53e+01 a.198.1.1 105437 1z3iX 644 7.53e+01 1j4aA 333 7.56e+01 c.2.1.4,c.23.12.1 71502,71503 1klxA 138 7.60e+01 a.118.18.1 77440 1n8fA 350 7.64e+01 c.1.10.4 85397 1zaiA 363 7.64e+01 1ki9A 192 7.69e+01 c.37.1.1 84404 1bgp 309 7.78e+01 1bgp a.93.1.1 18690 1t06A 235 7.81e+01 a.118.1.17 106194 1ckiA 317 7.86e+01 1csn d.144.1.7 41660 1rpnA 335 7.91e+01 c.2.1.2 97708 1gg1A 350 8.00e+01 1qr7A c.1.10.4 29187 1eyhA 144 8.00e+01 1eduA a.118.9.1 19214 2choA 716 8.07e+01 1y5iC 225 8.08e+01 1g4wR 383 8.15e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1zxiB 809 8.16e+01 1tn4 159 8.23e+01 1ncx a.39.1.5 17248 2g2dA 193 8.25e+01 2ar0A 541 8.29e+01 1fm2A 169 8.30e+01 1fm2A d.153.1.2 59877 1nz6A 101 8.45e+01 a.2.3.1 86441 1yewB 247 8.52e+01 1esxA 96 8.66e+01 1esxA j.11.1.1 59501 1bmtA 246 8.81e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1tib 269 8.82e+01 3tgl c.69.1.17 34738 1ks9A 291 8.85e+01 a.100.1.7,c.2.1.6 68857,68858 2c5rA 67 8.85e+01 1po5A 476 8.93e+01 a.104.1.1 94963