# List of top-scoring protein chains for T0368.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fo7A 136 2.46e-28 1na0A 125 1.74e-25 k.38.1.1 85479 1w3bA 388 6.26e-21 a.118.8.1 109149 1na3A 91 8.26e-18 k.38.1.1 85481 2avpA 70 2.69e-15 1fchA 368 3.55e-15 1fchA a.118.8.1 19212 2dbaA 148 1.59e-14 2gw1A 514 2.86e-14 2c2lA 281 5.17e-14 1qz2A 336 7.80e-13 a.118.8.1,d.26.1.1 104663,104664 1p5qA 336 1.26e-12 a.118.8.1,d.26.1.1 104068,104069 1elwA 118 2.17e-12 1a17 a.118.8.1 19207 1xnfA 275 5.22e-12 1a17 166 1.19e-11 1a17 a.118.8.1 19206 2bugA 140 2.36e-11 1kt0A 457 5.21e-11 a.118.8.1,d.26.1.1,d.26.1.1 77525,77526,77527 1kt1A 457 5.24e-11 a.118.8.1,d.26.1.1,d.26.1.1 77528,77529,77530 2fbnA 198 7.27e-11 1elrA 131 7.41e-11 1a17 a.118.8.1 19209 1wao1 477 1.86e-09 1hh8A 213 6.36e-09 1e96B a.118.8.1 61042 1e96B 203 6.45e-09 1e96B a.118.8.1 19211 1wm5A 208 8.30e-09 1ihgA 370 3.70e-08 2cpl a.118.8.1,b.62.1.1 62380,62381 1ouvA 273 2.78e-05 a.118.18.1 93570 1hxiA 121 4.50e-05 1hxiA a.118.8.1 61366 1hz4A 373 1.27e-04 a.118.8.2 65960 1ya0A 497 1.29e-03 1qqeA 292 2.92e-03 1qqeA a.118.8.1 19210 1tjcA 108 7.19e-03 1zu2A 158 1.39e-02 1zbpA 273 3.51e-02 1o1tA 380 5.49e-02 a.118.6.1 86551 1o5mA 377 5.59e-02 a.118.6.1 92507 1nl4A 312 6.67e-02 a.118.6.1 80617 1ni1A 315 6.92e-02 a.118.6.1 91888 2ff4A 388 7.21e-02 1qbqA 333 7.27e-02 1ft1A a.118.6.1 19187 1tn6A 382 1.44e-01 1b89A 449 2.05e-01 1b89A a.118.1.3 19138 1jcrA 377 2.24e-01 a.118.6.1 66506 1xi4A 1630 2.30e-01 1ft2A 315 3.50e-01 1ft1A a.118.6.1 19190 1klxA 138 1.09e+00 a.118.18.1 77440 1iygA 133 1.18e+00 a.118.8.1 76947 1nznA 126 1.19e+00 a.118.8.1 92382 1a6dA 545 1.40e+00 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 2crbA 97 1.51e+00 1pc2A 152 1.59e+00 a.118.8.1 94427 1oryA 130 2.25e+00 a.24.19.1 93466 1orjA 130 2.37e+00 a.24.19.1 93456 1fjgT 106 3.73e+00 1fjfT a.7.6.1 16338 1xmqT 106 3.86e+00 1i94T 105 3.90e+00 1fjfT a.7.6.1 62011 1pnsT 99 4.05e+00 i.1.1.1 88187 1rpnA 335 6.21e+00 c.2.1.2 97708 1rk8A 165 6.23e+00 d.58.7.1 97603 1f89A 291 6.54e+00 d.160.1.1 64988 2f5tX 233 7.32e+00 1x04A 230 8.49e+00 1rce 173 9.28e+00 2fha a.25.1.1 16691 1l8dA 112 9.30e+00 h.4.12.1 73687 2f2fB 283 9.91e+00 1v7cA 351 1.02e+01 c.79.1.1 100446 1li5A 461 1.03e+01 a.27.1.1,c.26.1.1 73912,73913 1zcdA 388 1.06e+01 1o9hA 250 1.06e+01 c.66.1.29 86693 1wy6A 172 1.07e+01 158l 164 1.22e+01 1l92 d.2.1.3 36747 1o9gA 250 1.26e+01 c.66.1.29 86692 1wfdA 93 1.30e+01 1whe 86 1.34e+01 1edmB g.3.11.1,g.32.1.1 44242,44974 1uvjA 664 1.47e+01 e.8.1.6 100045 1wacA 662 1.49e+01 1oqvA 192 1.50e+01 d.24.1.2 87320 2c63A 247 1.51e+01 1yhsA 273 1.59e+01 1xqzA 300 1.64e+01 1os6A 71 1.77e+01 a.138.1.1 93476 2c60A 111 1.77e+01 2fu4A 83 1.77e+01 2ce7A 476 1.79e+01 1x0lA 333 1.86e+01 2g8yA 385 1.86e+01 1rcd 173 1.92e+01 2fha a.25.1.1 16687 1rci 173 1.93e+01 2fha a.25.1.1 16688 1yxtA 293 1.95e+01 1yxsA 293 1.96e+01 1xwsA 313 2.01e+01 1r6hA 172 2.02e+01 c.45.1.1 97150 1xkuA 330 2.02e+01 1v3aA 173 2.02e+01 1yxrA 77 2.11e+01 1pqkA 164 2.12e+01 d.2.1.3 95021 2etdA 171 2.19e+01 1x03A 252 2.22e+01 1xecA 329 2.26e+01 1mc8A 343 2.27e+01 a.60.7.1,c.120.1.2 78945,78946 2cuvA 71 2.39e+01 1om2A 95 2.42e+01 1om2A a.23.4.1 16520 1wt4A 73 2.44e+01 2fnaA 357 2.48e+01 1zwwA 256 2.49e+01 1pqiA 164 2.57e+01 d.2.1.3 95019 1l5zA 155 2.63e+01 c.23.1.1 77722 1qt8A 164 2.66e+01 1l92 d.2.1.3 36851 3ximA 393 2.77e+01 4xis c.1.15.3 29477 2axtC 473 2.77e+01 1dceA 567 2.80e+01 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1h6oA 204 2.88e+01 a.146.1.1 60689 1uz2X 162 2.95e+01 b.60.1.1 108149 1gw5B 591 2.99e+01 a.118.1.10 70630 1lj2A 110 3.12e+01 h.1.13.2 73926 2cg4A 152 3.13e+01 1pqjA 164 3.20e+01 d.2.1.3 95020 1ctwA 164 3.31e+01 1l92 d.2.1.3 36913 1bebA 162 3.32e+01 1bebA b.60.1.1 27115 1qg5A 162 3.32e+01 1bebA b.60.1.1 63323 1cj5A 162 3.33e+01 1bebA b.60.1.1 27124 1qkkA 155 3.35e+01 1dbwA c.23.1.1 31104 164l 164 3.43e+01 1l92 d.2.1.3 36714 2ctpA 78 3.46e+01 1r1hA 696 3.48e+01 d.92.1.4 104756 1v8fA 276 3.52e+01 c.26.1.4 100503 1w7jB 151 3.57e+01 1lpgA 134 3.58e+01 g.3.11.1 84666 2awpA 198 3.67e+01 2xinA 393 3.73e+01 4xis c.1.15.3 29493 1p0sL 138 3.74e+01 g.3.11.1,g.32.1.1 93874,93875 1k7yA 577 3.80e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1xinA 393 3.83e+01 4xis c.1.15.3 29513 1wclA 76 3.85e+01 1u9lA 70 3.90e+01 a.60.4.2 107751 1ximA 393 3.93e+01 4xis c.1.15.3 29473 9ximA 393 3.94e+01 4xis c.1.15.3 29505 3xinA 393 3.96e+01 4xis c.1.15.3 29489 2axtK 37 3.97e+01 176lA 164 4.00e+01 1l92 d.2.1.3 36942 1b8eA 162 4.08e+01 1bebA b.60.1.1 59077 1jbiA 100 4.11e+01 d.209.1.1 66481 2ximA 393 4.11e+01 4xis c.1.15.3 29497 156l 164 4.15e+01 1l92 d.2.1.3 36709 1izlC 473 4.22e+01 i.5.1.1 76996 1vmkA 277 4.29e+01 5xinA 393 4.33e+01 4xis c.1.15.3 29481 1ggzA 148 4.33e+01 a.39.1.5 70176 1kg4A 225 4.37e+01 a.96.1.2 77380 1bpoA 494 4.41e+01 1bpoA a.118.1.4,b.69.6.1 19143,27670 1p37A 164 4.41e+01 d.2.1.3 93979 2cu1A 103 4.44e+01 2f1mA 277 4.45e+01 1x87A 551 4.47e+01 1pqdA 164 4.49e+01 d.2.1.3 95013 1l61 164 4.55e+01 1l92 d.2.1.3 36674 1p3nA 164 4.64e+01 d.2.1.3 94048 1ufvA 276 4.66e+01 c.26.1.4 88487 1nhyA 219 4.69e+01 a.45.1.1,c.47.1.5 80520,80521 1kg6A 225 4.74e+01 a.96.1.2 77382 1kg5A 225 4.77e+01 a.96.1.2 77381 2ag0A 563 4.79e+01 2a98A 259 4.89e+01 1p6yA 164 4.89e+01 d.2.1.3 94197 1xvbA 527 4.92e+01 1mun 225 5.10e+01 1mun a.96.1.2 18744 1kqjA 225 5.25e+01 a.96.1.2 72879 1qs5A 162 5.26e+01 1l92 d.2.1.3 36974 1vyhC 410 5.33e+01 2cptA 117 5.35e+01 1kg2A 225 5.37e+01 a.96.1.2 77378 1konA 249 5.38e+01 e.39.1.1 72823 1clm 148 5.53e+01 1cll a.39.1.5 17301 1wvfA 520 5.57e+01 1l68 164 5.58e+01 1l92 d.2.1.3 36665 165l 164 5.63e+01 1l92 d.2.1.3 36680 1diiA 521 5.65e+01 1qltA d.58.32.1,d.145.1.1 39481,41744 2bx9A 53 5.66e+01 217l 164 5.66e+01 1l92 d.2.1.3 36623 1exrA 148 5.69e+01 1cll a.39.1.5 17299 1n97A 389 5.71e+01 a.104.1.1 80335 1t6lA 290 5.77e+01 d.131.1.2,d.131.1.2 106574,106575 1kg7A 225 5.85e+01 a.96.1.2 77383 1sly 618 5.93e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 139l 164 5.97e+01 1l92 d.2.1.3 36643 1y6wA 148 6.06e+01 1dj8A 89 6.10e+01 1bg8A a.57.1.1 17919 2cfxA 144 6.16e+01 1q08A 99 6.16e+01 a.6.1.3 95497 1yupA 162 6.24e+01 2cfuA 658 6.32e+01 1ei5A 520 6.33e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1qp8A 303 6.36e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1wr0A 81 6.38e+01 1lyi 164 6.42e+01 1l92 d.2.1.3 36821 112l 164 6.42e+01 1l92 d.2.1.3 36677 138l 164 6.43e+01 1l92 d.2.1.3 36679 244l 164 6.57e+01 1l92 d.2.1.3 36687 233l 164 6.66e+01 1l92 d.2.1.3 36830 1xm2A 173 6.71e+01 1w63B 584 6.75e+01 i.23.1.1 109193 3psg 370 6.75e+01 1smrA b.50.1.2 26841 1k8kG 151 6.79e+01 a.118.13.1 68313 1l66 164 6.82e+01 1l92 d.2.1.3 36626 109l 164 6.85e+01 1l92 d.2.1.3 36781 1f9zA 135 6.88e+01 1qipA d.32.1.1 38484 2aw4M 136 6.89e+01 1weiA 225 6.90e+01 a.96.1.2 109339 1qsaA 618 6.90e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 155l 164 6.98e+01 1l92 d.2.1.3 36762 1zclA 180 7.07e+01 1ww8A 439 7.14e+01 1v54M 46 7.18e+01 f.23.7.1 100334 1quhA 162 7.22e+01 1l92 d.2.1.3 36852 1nq0A 263 7.23e+01 a.123.1.1 86005 1p64A 164 7.37e+01 d.2.1.3 94155 1quoA 162 7.38e+01 1l92 d.2.1.3 36853 159l 164 7.39e+01 1l92 d.2.1.3 36682 1qt4A 164 7.44e+01 1l92 d.2.1.3 36917 1pkxA 592 7.46e+01 c.24.1.3,c.97.2.1 94838,94839 2aryA 351 7.53e+01 1qs9A 162 7.57e+01 1l92 d.2.1.3 36922 1xfkA 336 7.64e+01 1qudA 162 7.65e+01 1l92 d.2.1.3 36778 1l84 164 7.66e+01 1l92 d.2.1.3 36820 1l83 164 7.67e+01 1l92 d.2.1.3 36630 2b6tA 162 7.71e+01 157l 164 7.79e+01 1l92 d.2.1.3 36717 171l 164 7.82e+01 1l92 d.2.1.3 36962 1b43A 340 7.85e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1bmtA 246 7.85e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1t03B 437 7.92e+01 e.8.1.2 99055 1t05B 437 7.92e+01 e.8.1.2 99062 1d2wA 164 7.96e+01 1l92 d.2.1.3 36802 210l 163 7.97e+01 1l92 d.2.1.3 36884 1o0yA 260 8.00e+01 c.1.10.1 80756 1bvoA 175 8.05e+01 1a3qA b.2.5.3 22457 1l54 164 8.09e+01 1l92 d.2.1.3 36811 2gk3A 256 8.16e+01 2akjA 608 8.18e+01 1nq1A 263 8.18e+01 a.123.1.1 86006 2d29A 387 8.31e+01 211l 165 8.38e+01 1l92 d.2.1.3 36683 1qrfA 213 8.47e+01 1qreA b.81.1.5 28067 1qrlA 214 8.50e+01 1qreA b.81.1.5 28070 1lyg 164 8.51e+01 1l92 d.2.1.3 36689 1thjA 214 8.55e+01 1qreA b.81.1.5 28072 1ywtA 248 8.56e+01 119l 164 8.58e+01 1l92 d.2.1.3 36622 1emy 153 8.58e+01 1a6m a.1.1.2 15204 1cdmA 144 8.68e+01 1cll a.39.1.5 17270 2c08A 204 8.71e+01 1y0vH 146 8.75e+01 1k93D 144 8.77e+01 a.39.1.5 68330 1qfzA 308 8.78e+01 1fnc b.43.4.2,c.25.1.1 25633,31523 1qg0A 308 8.79e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 170l 164 8.79e+01 1l92 d.2.1.3 36968 1qgaA 308 8.82e+01 1fnc b.43.4.2,c.25.1.1 25637,31527 3cln 148 8.84e+01 1cll a.39.1.5 17286 2f7dA 215 8.84e+01 1xfxO 149 8.90e+01 1sswA 164 8.99e+01