# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 5.01e-02 k.38.1.1 85481 1elwA 118 5.15e-02 1a17 a.118.8.1 19207 2fbnA 198 8.96e-02 2fxaA 207 1.17e-01 1hz4A 373 2.59e-01 a.118.8.2 65960 1ihgA 370 3.06e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1elrA 131 8.67e-01 1a17 a.118.8.1 19209 2ff4A 388 1.39e+00 2ethA 154 1.96e+00 1hh8A 213 2.16e+00 1e96B a.118.8.1 61042 1zejA 293 2.17e+00 1f6fA 199 2.87e+00 1f6fA a.26.1.1 16839 1dc1A 323 2.93e+00 1dc1A c.52.1.11 33321 1oshA 232 3.29e+00 a.123.1.1 93496 1wy6A 172 4.12e+00 1hb6A 86 4.53e+00 a.11.1.1 70959 1xkpC 143 4.88e+00 1lfpA 249 5.06e+00 e.39.1.1 73885 1tujA 123 5.13e+00 1jogA 146 5.30e+00 a.24.16.2 77142 1i6pA 220 5.64e+00 1ddzA c.53.2.1 61848 1uvjA 664 5.78e+00 e.8.1.6 100045 2a61A 145 5.80e+00 1z91A 147 6.63e+00 1l3pA 102 7.08e+00 a.24.17.1 84520 2g7sA 194 7.75e+00 1gk9A 260 7.99e+00 d.153.1.2 65246 2azeA 155 8.37e+00 1pme 380 8.55e+00 1hcl d.144.1.7 41653 1ydiA 263 9.99e+00 1oxjA 173 1.01e+01 a.60.1.2,a.118.1.13 87517,87518 1lriA 98 1.07e+01 a.134.1.1 74223 1w36B 1180 1.15e+01 1xnfA 275 1.18e+01 2f3yA 148 1.19e+01 1ggzA 148 1.19e+01 a.39.1.5 70176 1wf3A 301 1.22e+01 1sfxA 109 1.24e+01 a.4.5.50 105505 2co5A 99 1.27e+01 1aisB 200 1.28e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1a6m 151 1.29e+01 1a6m a.1.1.2 15018 1us7B 265 1.29e+01 a.205.1.1 99858 1zybA 232 1.30e+01 1bh9B 89 1.31e+01 1bh9B a.22.1.3 16485 1nznA 126 1.34e+01 a.118.8.1 92382 2ge7A 108 1.41e+01 1v4aA 440 1.50e+01 a.24.16.4,d.218.1.9 108350,108351 2gtrA 261 1.51e+01 1wdcC 156 1.60e+01 1wdcC a.39.1.5 17317 1vj7A 393 1.72e+01 a.211.1.1,d.218.1.8 100801,100802 1yt3A 375 1.73e+01 1tf5A 844 1.76e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2fnaA 357 1.82e+01 1bif 469 1.85e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1cxqA 162 1.85e+01 1cxqA c.55.3.2 33621 2aibA 98 1.87e+01 2h1rA 299 1.93e+01 1s4bP 674 1.98e+01 d.92.1.5 105252 1lj9A 144 2.12e+01 a.4.5.28 78035 2absA 383 2.13e+01 1odoA 408 2.14e+01 a.104.1.1 92783 1w79A 489 2.15e+01 1m9xC 146 2.17e+01 a.73.1.1 84907 1w9rA 119 2.17e+01 1tn6A 382 2.19e+01 2d3dA 88 2.24e+01 1q7lB 88 2.44e+01 1ylkA 172 2.44e+01 1khtA 192 2.49e+01 c.37.1.1 84401 1evsA 187 2.49e+01 1evsA a.26.1.1 16845 3sdhA 146 2.54e+01 3sdhA a.1.1.2 14984 1vkeA 133 2.56e+01 a.152.1.2 108650 1yx4A 132 2.58e+01 1gpmA 525 2.61e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1nzyA 269 2.66e+01 1nzyA c.14.1.3 30903 2axyA 73 2.69e+01 2c2aA 258 2.70e+01 1rzsA 61 2.72e+01 a.35.1.2 105139 2es9A 115 2.75e+01 1qc7A 101 2.76e+01 1qc7A a.118.14.1 18456 1zx4A 192 2.82e+01 1paqA 189 2.84e+01 a.118.1.14 94413 1repC 251 2.85e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2g5cA 281 2.85e+01 1ppjF 110 2.90e+01 f.27.1.1 104262 1yzxA 226 2.90e+01 1gvnA 90 2.92e+01 a.8.2.1 76353 1v4xB 146 2.93e+01 a.1.1.2 108364 1nz6A 101 2.99e+01 a.2.3.1 86441 1ng6A 148 3.03e+01 a.182.1.1 85670 1nu7D 282 3.06e+01 a.8.6.1,a.8.6.1 92191,92192 1knyA 253 3.07e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2bl0C 142 3.10e+01 2c6yA 111 3.13e+01 2d9iA 96 3.15e+01 1g8eA 116 3.18e+01 1g8eA a.145.1.1 60346 1wlmA 151 3.37e+01 1g2qA 187 3.39e+01 c.61.1.1 65117 2c5uA 375 3.39e+01 1gsoA 431 3.43e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1wmuB 146 3.43e+01 a.1.1.2 109417 2ex5A 207 3.44e+01 2gyqA 175 3.45e+01 1ugpB 226 3.48e+01 b.34.4.4 107832 1mw7A 240 3.51e+01 e.39.1.1 79557 1g5cA 170 3.52e+01 1g5cA c.53.2.1 60264 2g38B 198 3.52e+01 1r8mE 203 3.56e+01 a.118.3.1 97242 1he1A 135 3.66e+01 1he1A a.24.11.1 16641 1muwA 386 3.68e+01 c.1.15.3 79495 1t7lA 766 3.68e+01 1j1qA 261 3.68e+01 d.165.1.1 90768 1orjA 130 3.69e+01 a.24.19.1 93456 1ash 150 3.69e+01 1ash a.1.1.2 15622 1or7A 194 3.79e+01 a.4.13.2,a.177.1.1 87332,87333 2g7uA 257 3.80e+01 2f2eA 146 3.85e+01 2fq4A 192 3.96e+01 2ewcA 126 3.99e+01 1f7uA 607 4.02e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2g3bA 208 4.08e+01 2auwA 170 4.11e+01 1lw1A 177 4.17e+01 a.152.1.1 74290 2bvlA 543 4.19e+01 1uehA 253 4.30e+01 c.101.1.1 99259 2a7kA 250 4.34e+01 2cohA 202 4.34e+01 1z7lA 276 4.38e+01 1knqA 175 4.42e+01 c.37.1.17 72786 1wovA 250 4.45e+01 1iw0A 215 4.46e+01 a.132.1.1 83720 2gmyA 153 4.49e+01 1ekjA 221 4.52e+01 1ekjB c.53.2.1 33364 1i36A 264 4.62e+01 a.100.1.8,c.2.1.6 71108,71109 1vefA 395 4.63e+01 2a6qA 86 4.64e+01 2azeC 46 4.65e+01 2fbhA 146 4.68e+01 1i5jA 79 4.76e+01 1i5jA j.39.1.1 61788 1v54E 109 4.81e+01 a.118.11.1 100326 1qu1A 155 4.99e+01 1qu1A h.3.1.1 45670 1dqeA 137 4.99e+01 1dqeA a.39.2.1 17388 1u9cA 224 5.03e+01 1ho8A 480 5.16e+01 1ho8A a.118.1.9 61107 1ux5A 411 5.17e+01 a.207.1.1 100144 1wy9A 147 5.19e+01 1ylmA 144 5.22e+01 2b99A 156 5.30e+01 1t95A 240 5.30e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1c7nA 399 5.39e+01 1d2fA c.67.1.3 34413 1h6pA 203 5.43e+01 a.146.1.1 60690 2fa8A 105 5.43e+01 1x91A 153 5.46e+01 1v8fA 276 5.47e+01 c.26.1.4 100503 1sqgA 429 5.47e+01 a.79.1.3,c.66.1.38 105912,105913 1jb9A 316 5.55e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1t07A 94 5.55e+01 d.279.1.1 106196 1bhdA 118 5.56e+01 1bkrA a.40.1.1 17398 1fc6A 388 5.61e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 3proC 166 5.66e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1txgA 335 5.67e+01 1y97A 238 5.67e+01 1dvoA 152 5.69e+01 1dvoA a.136.1.1 19623 1nvvS 481 5.75e+01 a.117.1.1 86279 1o20A 427 5.81e+01 c.82.1.1 86556 1jgsA 138 5.82e+01 a.4.5.28 66683 1t33A 224 5.83e+01 a.4.1.9,a.121.1.1 106295,106296 1k3sA 113 5.89e+01 d.198.1.1 68120 1rwyA 109 5.98e+01 a.39.1.4 98002 1ppjH 78 6.07e+01 f.28.1.1 104264 1mvfD 82 6.12e+01 b.129.1.1 85143 1zroA 602 6.12e+01 1u55A 188 6.19e+01 d.278.1.1 107677 2g6tA 306 6.19e+01 2f9dP 43 6.20e+01 1n3kA 130 6.21e+01 a.77.1.4 79965 2br9A 234 6.22e+01 1qwgA 251 6.23e+01 c.1.27.1 96473 1em9A 154 6.27e+01 1d1dA a.73.1.1 18333 2frfA 153 6.29e+01 1yj7A 171 6.35e+01 2aa1B 146 6.38e+01 1nmeB 92 6.48e+01 1mtyG 162 6.49e+01 1mtyG a.23.3.1 16498 1bco 327 6.49e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1ek9A 428 6.53e+01 1ek9A f.5.1.1 43809 2anxA 146 6.58e+01 1qb2A 109 6.68e+01 1qb2A a.36.1.1 17125 1oohA 126 6.69e+01 a.39.2.1 93383 1t1dA 100 6.69e+01 1t1dA d.42.1.2 38637 1lvaA 258 6.73e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1fxxA 482 6.75e+01 1fxxA c.55.3.5 33726 2ge3A 170 6.78e+01 1k78A 149 6.90e+01 a.4.1.5,a.4.1.5 68255,68256 1exrA 148 6.90e+01 1cll a.39.1.5 17299 2b3nA 159 6.93e+01 1omhA 293 6.95e+01 d.89.1.5 93348 1zbpA 273 7.01e+01 1h3fA 432 7.03e+01 c.26.1.1,d.66.1.4 76631,76632 2d5xA 141 7.06e+01 1p4kA 295 7.11e+01 d.153.1.5 87772 1n81A 186 7.11e+01 a.185.1.1 85388 1lj2A 110 7.18e+01 h.1.13.2 73926 1o9iA 266 7.18e+01 a.25.1.3 92671 1xizA 159 7.19e+01 1r9kA 172 7.21e+01 a.168.1.1 104869 1gntA 553 7.21e+01 e.26.1.1 70290 1t98A 287 7.32e+01 1u46A 291 7.35e+01 d.144.1.7 107656 2fldA 165 7.40e+01 2gviA 204 7.44e+01 1pb1A 416 7.52e+01 c.77.1.1 88014 1i3jA 116 7.56e+01 1i3jA d.285.1.1 61594 2abk 211 7.61e+01 2abk a.96.1.1 18743 1yemA 179 7.66e+01 2dfkA 402 7.67e+01 1h5uA 842 7.72e+01 1a8i c.87.1.4 60655 2ex4A 241 7.76e+01 1pvaA 110 7.80e+01 1a75A a.39.1.4 17207 1vkfA 188 7.81e+01 c.1.29.1 108656 1gjnA 153 7.82e+01 a.1.1.2 70191 1joyA 67 7.85e+01 1joyA a.30.2.1 16991 2fuqA 747 7.89e+01 2bl0B 145 7.95e+01 2b2aA 199 7.96e+01 1e7lA 157 7.96e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1pyoB 105 8.07e+01 1n93X 375 8.08e+01 a.206.1.1 91707 1wxiA 275 8.19e+01 1bx4A 345 8.33e+01 1bx4A c.72.1.1 34935 1z7kB 62 8.34e+01 1v1aA 309 8.35e+01 c.72.1.1 100249 1ic2A 81 8.35e+01 h.1.5.1 62247 2blkA 122 8.35e+01 2crbA 97 8.38e+01 1ia9A 280 8.39e+01 1ia9A d.144.1.5 62113 2hntE 81 8.40e+01 1ucyH 1bt3A 345 8.42e+01 1bt3A a.86.1.2 18507 1k7wA 468 8.45e+01 a.127.1.1 72130 1z0xA 220 8.48e+01 2gd5A 179 8.57e+01 2d2yA 145 8.57e+01 2b6cA 220 8.59e+01 1ub0A 258 8.60e+01 c.72.1.2 88394 2gpiA 91 8.63e+01 1regX 122 8.73e+01 1regX d.58.27.1 39406 1xtpA 254 8.74e+01 1ntvA 152 8.80e+01 b.55.1.2 86168 1nc5A 373 8.81e+01 a.102.1.6 85548 1zt2B 212 8.92e+01 2tct 207 8.96e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1dp7P 76 8.96e+01 1dp7P a.4.5.20 16159