# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 3.17e-04 k.38.1.1 85481 1elwA 118 1.15e-03 1a17 a.118.8.1 19207 2fbnA 198 8.34e-03 1ihgA 370 1.90e-02 2cpl a.118.8.1,b.62.1.1 62380,62381 1elrA 131 1.59e-01 1a17 a.118.8.1 19209 1hz4A 373 4.95e-01 a.118.8.2 65960 1xnfA 275 6.14e-01 1fjgT 106 8.20e-01 1fjfT a.7.6.1 16338 1lq7A 67 1.01e+00 k.9.1.1 74183 1za0A 275 2.56e+00 1ug7A 128 3.38e+00 a.24.24.1 107824 2aq9A 262 3.59e+00 1u9cA 224 3.90e+00 2pvbA 107 4.22e+00 1a75A a.39.1.4 17205 1x91A 153 4.73e+00 1u20A 212 5.36e+00 2crbA 97 5.47e+00 1ppjF 110 5.65e+00 f.27.1.1 104262 1w79A 489 5.78e+00 1rss 151 6.21e+00 1rss a.75.1.1 18392 1y791 680 6.70e+00 1ylmA 144 6.89e+00 1zvaA 77 7.20e+00 2bt6A 108 7.77e+00 2aexA 346 7.91e+00 2d9iA 96 8.37e+00 4cpv 109 8.56e+00 1a75A a.39.1.4 17198 1fxxA 482 8.75e+00 1fxxA c.55.3.5 33726 1pyoB 105 9.04e+00 1kkhA 317 9.60e+00 d.14.1.5,d.58.26.3 72645,72646 1nz6A 101 1.01e+01 a.2.3.1 86441 2gi3A 476 1.02e+01 1rq6A 62 1.16e+01 1w36B 1180 1.17e+01 1knqA 175 1.20e+01 c.37.1.17 72786 2gboA 104 1.42e+01 1wt4A 73 1.47e+01 1bt3A 345 1.48e+01 1bt3A a.86.1.2 18507 2ghjA 118 1.51e+01 1sxrA 183 1.60e+01 d.118.1.1 106101 2bpqA 373 1.66e+01 1nu7D 282 1.66e+01 a.8.6.1,a.8.6.1 92191,92192 1jalA 363 1.71e+01 c.37.1.8,d.15.10.2 84138,84139 4ubpB 126 1.82e+01 1ubpB b.85.3.1 28345 1joyA 67 1.90e+01 1joyA a.30.2.1 16991 1xvaA 292 2.05e+01 1xvaA c.66.1.5 34183 2gmyA 153 2.08e+01 1m9xC 146 2.08e+01 a.73.1.1 84907 1ouvA 273 2.10e+01 a.118.18.1 93570 1a78A 134 2.17e+01 1c1lA b.29.1.3 24212 1uhkA 191 2.20e+01 1vkfA 188 2.24e+01 c.1.29.1 108656 1avsA 90 2.30e+01 1cll a.39.1.5 17226 1ux5A 411 2.36e+01 a.207.1.1 100144 1ctf 74 2.39e+01 1ctf d.45.1.1 38759 1sy7A 715 2.43e+01 1zejA 293 2.45e+01 1uvjA 664 2.50e+01 e.8.1.6 100045 1vefA 395 2.54e+01 1evsA 187 2.60e+01 1evsA a.26.1.1 16845 1d3vA 323 2.63e+01 1d3vA c.42.1.1 32559 1ustA 93 2.67e+01 a.4.5.13 99884 1a2pA 110 2.79e+01 1b20A d.1.1.2 36140 1z57A 339 2.82e+01 1hb6A 86 2.88e+01 a.11.1.1 70959 1x0lA 333 2.91e+01 1qb2A 109 2.95e+01 1qb2A a.36.1.1 17125 1twuA 139 2.99e+01 d.32.1.8 107413 1d2mA 665 3.01e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 2gyqA 175 3.05e+01 2c4bA 143 3.06e+01 1qc7A 101 3.06e+01 1qc7A a.118.14.1 18456 1poiA 317 3.14e+01 1poiA c.124.1.2 34153 2gviA 204 3.20e+01 1it2A 146 3.22e+01 a.1.1.2 66365 1zu1A 127 3.26e+01 2b0tA 738 3.28e+01 1m65A 245 3.32e+01 c.6.3.1 84847 1ur1A 378 3.35e+01 c.1.8.3 99804 1rm6A 769 3.47e+01 1knyA 253 3.58e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1bx4A 345 3.61e+01 1bx4A c.72.1.1 34935 2c2aA 258 3.73e+01 1n1fA 159 3.77e+01 a.26.1.3 79803 1v0jA 399 3.81e+01 1lw1A 177 3.83e+01 a.152.1.1 74290 1i4jA 110 3.86e+01 d.55.1.1 76734 1twdA 256 3.89e+01 c.1.30.1 107397 1ovlA 271 3.97e+01 a.123.1.1 87455 1qwlA 505 3.99e+01 e.5.1.1 96483 1o17A 345 4.01e+01 a.46.2.1,c.27.1.1 80765,80766 1pieA 419 4.02e+01 d.14.1.5,d.58.26.7 94706,94707 1ydiA 263 4.08e+01 1q1oA 98 4.17e+01 d.15.2.2 95596 1kqfB 294 4.18e+01 d.58.1.5,f.23.22.1 75900,75901 1ek9A 428 4.18e+01 1ek9A f.5.1.1 43809 2erbA 125 4.25e+01 1sawA 225 4.26e+01 2fe5A 94 4.29e+01 1w19A 160 4.31e+01 1zv1A 65 4.34e+01 1wlmA 151 4.34e+01 1ornA 226 4.40e+01 a.96.1.1 87342 1bc5A 269 4.47e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1c4oA 664 4.50e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1i4dA 224 4.54e+01 h.4.7.1 61682 1w53A 84 4.55e+01 a.186.1.2 109175 2g7sA 194 4.66e+01 1dmhA 311 4.68e+01 1dmhA b.3.6.1 22633 1zrn 232 4.69e+01 1qq5A c.108.1.1 43323 1h8bB 53 4.74e+01 2ak3A 226 4.86e+01 1zin c.37.1.1,g.41.2.1 31892,45193 2br9A 234 4.92e+01 1gc0A 398 5.01e+01 c.67.1.3 70168 1go3F 107 5.03e+01 a.60.8.2 65407 1gu9A 177 5.08e+01 a.152.1.1 65540 1v0lA 313 5.13e+01 c.1.8.3 108207 1a32 88 5.13e+01 1a32 a.16.1.2 16384 1nznA 126 5.15e+01 a.118.8.1 92382 1mlwA 301 5.18e+01 d.178.1.1 79289 1bco 327 5.20e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1z8uA 102 5.26e+01 1l3pA 102 5.29e+01 a.24.17.1 84520 2cwyA 94 5.30e+01 1gd7A 109 5.30e+01 b.40.4.4 60441 2cyjA 118 5.41e+01 1af7 274 5.48e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1r5iD 216 5.56e+01 a.202.1.1 97091 1nrgA 261 5.71e+01 b.45.1.1 80694 1hf2A 210 5.74e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 2gibA 103 5.74e+01 1orjA 130 5.78e+01 a.24.19.1 93456 1sb0A 87 5.80e+01 a.12.1.1 98789 1tbfA 347 5.88e+01 a.211.1.2 106743 2f4lA 297 6.04e+01 1ve0A 134 6.15e+01 1llnA 262 6.16e+01 d.165.1.1 84625 1wy5A 317 6.19e+01 1ofcX 304 6.28e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2d3dA 88 6.51e+01 1ng6A 148 6.53e+01 a.182.1.1 85670 1xk5A 204 6.65e+01 1hh8A 213 6.66e+01 1e96B a.118.8.1 61042 1qv1A 195 6.82e+01 a.39.1.5 96347 1wlzA 105 6.84e+01 1hw5A 210 6.86e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1m4tA 392 6.90e+01 c.95.1.1,c.95.1.1 78617,78618 1vd3A 217 6.92e+01 1nbaA 264 7.08e+01 1nbaA c.33.1.3 31753 1oi7A 288 7.14e+01 c.2.1.8,c.23.4.1 87049,87050 2bkfA 87 7.25e+01 1w5tA 412 7.28e+01 2gtrA 261 7.42e+01 1s7zA 117 7.47e+01 a.159.3.1 98715 2d8dA 90 7.53e+01 1upkA 341 7.57e+01 a.118.1.15 99758 1i1wA 303 7.58e+01 c.1.8.3 76732 1rxqA 178 7.74e+01 a.213.1.1 105118 1zmeC 70 7.84e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 1zx4A 192 7.85e+01 1ra6A 461 8.03e+01 e.8.1.4 104879 1wv2A 265 8.09e+01 1m3kA 392 8.23e+01 c.95.1.1,c.95.1.1 78565,78566 1geaA 21 8.25e+01 j.81.1.1 60464 2f7fA 494 8.36e+01 1x46A 150 8.37e+01 1xsvA 113 8.41e+01 1oxjA 173 8.42e+01 a.60.1.2,a.118.1.13 87517,87518 1ln1A 214 8.53e+01 d.129.3.2 74038 1vkmA 297 8.70e+01 c.138.1.1 108670 1zkpA 268 8.75e+01 1gvjA 146 8.76e+01 a.4.5.21 90525 1y8aA 332 8.77e+01 1nfvA 179 8.92e+01 a.25.1.1 85642 1u2pA 163 8.96e+01