# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 4.56e-03 k.38.1.1 85481 1elwA 118 6.02e-03 1a17 a.118.8.1 19207 2fbnA 198 1.09e-02 1hz4A 373 8.90e-02 a.118.8.2 65960 1ihgA 370 1.08e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1oshA 232 1.13e-01 a.123.1.1 93496 2ff4A 388 1.95e-01 1txgA 335 4.36e-01 1upvA 257 8.74e-01 1tujA 123 1.20e+00 1za0A 275 1.21e+00 1x0lA 333 1.50e+00 1ovlA 271 1.71e+00 a.123.1.1 87455 1dc1A 323 1.77e+00 1dc1A c.52.1.11 33321 1mswD 883 1.91e+00 e.8.1.3 79427 1mlwA 301 2.24e+00 d.178.1.1 79289 1jb0A 755 2.30e+00 1jb0A f.29.1.1 62820 1n46A 258 2.54e+00 a.123.1.1 85315 1w36B 1180 2.67e+00 1xnfA 275 2.71e+00 1hh8A 213 2.80e+00 1e96B a.118.8.1 61042 2f3yA 148 2.94e+00 1elrA 131 3.32e+00 1a17 a.118.8.1 19209 1lfpA 249 3.47e+00 e.39.1.1 73885 1x46A 150 4.44e+00 1l3pA 102 4.58e+00 a.24.17.1 84520 2gtrA 261 4.79e+00 1ggzA 148 4.83e+00 a.39.1.5 70176 1wm1A 317 4.89e+00 c.69.1.7 109405 1wdcC 156 5.58e+00 1wdcC a.39.1.5 17317 3lynA 136 5.60e+00 1lis a.19.1.1 16413 2bl0C 142 5.80e+00 1fnnA 389 5.81e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 1mtyG 162 6.29e+00 1mtyG a.23.3.1 16498 1nrgA 261 6.47e+00 b.45.1.1 80694 1j8uA 325 6.68e+00 d.178.1.1 71611 2cqsA 842 6.83e+00 2c2aA 258 6.90e+00 1w79A 489 6.97e+00 1orjA 130 7.01e+00 a.24.19.1 93456 1paqA 189 7.37e+00 a.118.1.14 94413 1epxA 370 7.82e+00 1fbaA c.1.10.1 29150 1f6fA 199 7.92e+00 1f6fA a.26.1.1 16839 2dg5A 366 8.21e+00 1lk9A 448 8.40e+00 c.67.1.1 78057 2etbA 256 8.64e+00 2lisA 136 8.65e+00 1lis a.19.1.1 16405 2gaiA 633 8.67e+00 1u14A 172 8.90e+00 c.51.4.3 107579 1z82A 335 9.62e+00 1m7vA 363 9.75e+00 d.174.1.1 78748 1ek9A 428 9.89e+00 1ek9A f.5.1.1 43809 1exrA 148 1.00e+01 1cll a.39.1.5 17299 1ydiA 263 1.01e+01 1pb6A 212 1.07e+01 a.4.1.9,a.121.1.1 88017,88018 1uhgA 385 1.07e+01 e.1.1.1 88491 1vlgA 176 1.07e+01 a.25.1.1 108816 1su8A 636 1.10e+01 e.26.1.2 98999 1qlpA 394 1.12e+01 1ovaA e.1.1.1 42628 2g7gA 213 1.14e+01 1clc 639 1.16e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1syyA 346 1.18e+01 a.25.1.2 106126 2awiA 317 1.19e+01 1zejA 293 1.21e+01 1r9dA 787 1.23e+01 c.7.1.1 104865 1lvaA 258 1.24e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2d2yA 145 1.26e+01 2a2mA 258 1.28e+01 1x3lA 440 1.33e+01 2d29A 387 1.33e+01 1wz9A 375 1.34e+01 1khoA 370 1.34e+01 a.124.1.1,b.12.1.3 72489,72490 1rx0A 393 1.34e+01 a.29.3.1,e.6.1.1 98007,98008 1w0dA 337 1.35e+01 1zx4A 192 1.43e+01 1e4iA 447 1.43e+01 1e70M c.1.8.4 59225 1xg7A 250 1.44e+01 1wy6A 172 1.45e+01 2crbA 97 1.51e+01 1ux5A 411 1.57e+01 a.207.1.1 100144 1ow4A 129 1.59e+01 a.39.2.1 93628 1zaiA 363 1.61e+01 1zsqA 528 1.63e+01 1tw9A 206 1.67e+01 a.45.1.1,c.47.1.5 107381,107382 1eemA 241 1.71e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1r0dA 206 1.73e+01 a.216.1.1 104715 2f71A 298 1.73e+01 1pu6A 218 1.74e+01 a.96.1.5 95123 1ka2A 499 1.78e+01 d.92.1.5 77305 1xo0A 324 1.90e+01 1yrcA 414 1.91e+01 1wchA 315 2.03e+01 1ho8A 480 2.05e+01 1ho8A a.118.1.9 61107 2c6cA 707 2.05e+01 1ve0A 134 2.10e+01 1ornA 226 2.10e+01 a.96.1.1 87342 1bx4A 345 2.14e+01 1bx4A c.72.1.1 34935 1xdzA 240 2.19e+01 2d2sA 235 2.20e+01 1xkpC 143 2.24e+01 2bl2A 156 2.24e+01 1np3A 338 2.32e+01 a.100.1.2,c.2.1.6 85946,85947 1uhkA 191 2.55e+01 1w5tA 412 2.56e+01 1vkuA 100 2.59e+01 a.28.1.1 108690 1vf1A 229 2.62e+01 1fcyA 236 2.62e+01 2lbd a.123.1.1 19282 1p68A 102 2.65e+01 k.8.1.1 94158 2g0dA 409 2.66e+01 1pa1A 310 2.71e+01 c.45.1.2 94404 1lw1A 177 2.72e+01 a.152.1.1 74290 1at3A 247 2.72e+01 1at3A b.57.1.1 27021 1t07A 94 2.78e+01 d.279.1.1 106196 1ic2A 81 2.86e+01 h.1.5.1 62247 1cqxA 403 2.90e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1v54E 109 2.95e+01 a.118.11.1 100326 2g7sA 194 3.00e+01 2ethA 154 3.01e+01 1ug7A 128 3.01e+01 a.24.24.1 107824 1wdyA 285 3.01e+01 2ghjA 118 3.09e+01 2g3bA 208 3.13e+01 3gcb 470 3.14e+01 3gcb d.3.1.1 37032 2abqA 306 3.19e+01 1zgyA 272 3.20e+01 1ca1 370 3.22e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2aq9A 262 3.34e+01 1u6zA 513 3.35e+01 1w53A 84 3.41e+01 a.186.1.2 109175 2d3dA 88 3.46e+01 1joyA 67 3.49e+01 1joyA a.30.2.1 16991 1r9kA 172 3.52e+01 a.168.1.1 104869 1csn 298 3.53e+01 1csn d.144.1.7 41664 2bnxA 386 3.58e+01 1yc9A 442 3.59e+01 1w7jB 151 3.59e+01 1mla 309 3.60e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1i5nA 146 3.60e+01 1i5nA a.24.10.3 61805 1wlmA 151 3.61e+01 1ehyA 294 3.66e+01 1ehyA c.69.1.11 34693 1n83A 270 3.66e+01 a.123.1.1 80276 1guxA 218 3.74e+01 1guxA a.74.1.3 18388 1jogA 146 3.79e+01 a.24.16.2 77142 2cchB 260 3.82e+01 1yarA 233 3.86e+01 1avsA 90 3.88e+01 1cll a.39.1.5 17226 1vpdA 299 3.90e+01 1dvkA 173 3.92e+01 1dvkA a.72.1.1 18319 1dceB 331 3.93e+01 1dceB a.102.4.3 18872 1lyvA 306 3.93e+01 c.45.1.2 74348 1fjgT 106 3.96e+01 1fjfT a.7.6.1 16338 1k3yA 221 3.97e+01 a.45.1.1,c.47.1.5 77245,77246 2ffeA 311 4.01e+01 1gvhA 396 4.08e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1aisB 200 4.17e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1x91A 153 4.17e+01 1s3eA 520 4.17e+01 c.3.1.2,d.16.1.5 98426,98427 1kcfA 258 4.21e+01 a.140.2.1,c.55.3.7 68434,68435 1nigA 152 4.22e+01 a.25.2.1 85740 1nznA 126 4.22e+01 a.118.8.1 92382 1t1dA 100 4.31e+01 1t1dA d.42.1.2 38637 1cby 259 4.37e+01 1cby d.103.1.1 40705 1gu9A 177 4.43e+01 a.152.1.1 65540 1zy4A 303 4.47e+01 1up8A 598 4.51e+01 a.111.1.2 99710 2az0A 73 4.51e+01 1qb2A 109 4.65e+01 1qb2A a.36.1.1 17125 1uzbA 516 4.70e+01 c.82.1.1 100220 1kktA 511 4.79e+01 a.102.2.1 68687 1i36A 264 4.80e+01 a.100.1.8,c.2.1.6 71108,71109 1nz6A 101 4.80e+01 a.2.3.1 86441 2absA 383 4.89e+01 2bjkA 516 4.90e+01 1t5oA 351 4.92e+01 c.124.1.5 106459 1r12A 258 4.96e+01 e.4.1.1 96780 2gmyA 153 4.96e+01 1mvcA 240 5.05e+01 a.123.1.1 79499 2cruA 118 5.06e+01 2abk 211 5.07e+01 2abk a.96.1.1 18743 1ugpB 226 5.08e+01 b.34.4.4 107832 2sqcA 631 5.09e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1ng6A 148 5.18e+01 a.182.1.1 85670 1hleA 345 5.18e+01 1ovaA e.1.1.1 42618 1ntyA 311 5.21e+01 a.87.1.1,b.55.1.1 103873,103874 1xteA 154 5.23e+01 1w5qA 337 5.28e+01 1wvvA 265 5.28e+01 1omrA 201 5.31e+01 a.39.1.5 93349 2gfoA 396 5.35e+01 1uesA 191 5.44e+01 a.2.11.1,d.44.1.1 107798,107799 1jb9A 316 5.45e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1n45A 233 5.47e+01 a.132.1.1 79981 1ga3A 113 5.49e+01 1ga3A a.26.1.2 60411 1or4A 178 5.50e+01 a.1.1.2 93447 2bo4A 397 5.54e+01 1kxpD 458 5.56e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1pa2A 306 5.56e+01 1bgp a.93.1.1 18693 1ppjF 110 5.59e+01 f.27.1.1 104262 1knqA 175 5.60e+01 c.37.1.17 72786 1bdb 277 5.62e+01 1bdb c.2.1.2 29874 2b6cA 220 5.65e+01 1rxdA 159 5.70e+01 2c5kT 95 5.73e+01 1dqeA 137 5.74e+01 1dqeA a.39.2.1 17388 1ouvA 273 5.75e+01 a.118.18.1 93570 1p4kA 295 5.85e+01 d.153.1.5 87772 2bk9A 153 5.86e+01 1yb0A 159 5.93e+01 1k87A 669 5.97e+01 a.176.1.1,c.1.23.2 77286,77287 1u2eA 289 6.00e+01 1yixA 265 6.00e+01 1nc5A 373 6.05e+01 a.102.1.6 85548 2fmpA 335 6.15e+01 1w33A 181 6.18e+01 1ym3A 215 6.22e+01 1qgiA 259 6.26e+01 1qgiA d.2.1.7 37001 1o17A 345 6.29e+01 a.46.2.1,c.27.1.1 80765,80766 1pl5A 142 6.30e+01 h.1.23.1 104186 2fldA 165 6.33e+01 1b06A 210 6.44e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1sqnA 261 6.45e+01 a.123.1.1 105944 1n1fA 159 6.46e+01 a.26.1.3 79803 1gwiA 411 6.52e+01 a.104.1.1 76364 1vjoA 393 6.52e+01 c.67.1.3 100827 1t06A 235 6.53e+01 a.118.1.17 106194 1t2bA 397 6.54e+01 1a6m 151 6.56e+01 1a6m a.1.1.2 15018 1rzsA 61 6.67e+01 a.35.1.2 105139 2b49A 287 6.67e+01 1xsvA 113 6.72e+01 1w1wE 121 6.72e+01 1cjwA 166 6.82e+01 1cjwA d.108.1.1 40818 1ylmA 144 6.84e+01 1i1wA 303 6.85e+01 c.1.8.3 76732 1gqaA 130 6.92e+01 a.24.3.2 76275 1i88A 389 6.94e+01 c.95.1.2,c.95.1.2 66070,66071 1rq6A 62 6.97e+01 4cpv 109 7.01e+01 1a75A a.39.1.4 17198 1wy9A 147 7.01e+01 1auiB 169 7.10e+01 1auiB a.39.1.5 17325 1mun 225 7.16e+01 1mun a.96.1.2 18744 1wdcB 156 7.19e+01 1wdcB a.39.1.5 17302 1vkfA 188 7.22e+01 c.1.29.1 108656 2jdxA 385 7.22e+01 1jdw d.126.1.2 41139 1iqrA 420 7.23e+01 a.99.1.1,c.28.1.1 66275,66276 1knyA 253 7.29e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1gcvB 136 7.33e+01 1cg5B a.1.1.2 15589 1aky 221 7.35e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1iq8A 582 7.38e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2gdm 153 7.44e+01 2gdm a.1.1.2 15212 1bc5A 269 7.46e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2pvbA 107 7.53e+01 1a75A a.39.1.4 17205 2azjA 289 7.53e+01 1qo0D 196 7.54e+01 1qo0D c.23.1.3 31125 1gpjA 404 7.54e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1rss 151 7.65e+01 1rss a.75.1.1 18392 1nhkL 144 7.66e+01 1npk d.58.6.1 39142 2afaA 425 7.68e+01 1zv1A 65 7.72e+01 1vkeA 133 7.82e+01 a.152.1.2 108650 2afdA 88 7.84e+01 1af7 274 7.87e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 2b4lA 268 7.88e+01 1izcA 339 7.89e+01 c.1.12.5 83838 1g6uA 48 7.90e+01 1g6uA k.9.1.1 46425 1c7nA 399 7.93e+01 1d2fA c.67.1.3 34413 1evsA 187 7.94e+01 1evsA a.26.1.1 16845 1cxqA 162 7.94e+01 1cxqA c.55.3.2 33621 256bA 106 8.01e+01 256bA a.24.3.1 16539 1ldjA 760 8.01e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1tuaA 191 8.03e+01 d.51.1.1,d.51.1.1 107321,107322 2gboA 104 8.06e+01 2fztA 79 8.09e+01 1jdw 423 8.09e+01 1jdw d.126.1.2 41129 1w8iA 156 8.22e+01 1io2A 213 8.22e+01 1ekeA c.55.3.1 62612 2scpA 174 8.38e+01 2scpA a.39.1.5 17256 1jznA 135 8.40e+01 d.169.1.1 84262 2cw9A 194 8.42e+01 1tvlA 454 8.44e+01 c.1.16.4 107366 1m9xC 146 8.48e+01 a.73.1.1 84907 1oohA 126 8.54e+01 a.39.2.1 93383 1tn6A 382 8.54e+01 1xtpA 254 8.60e+01 1qf8A 182 8.61e+01 1qf8A g.41.4.1 45212 1lq7A 67 8.75e+01 k.9.1.1 74183 1fxxA 482 8.78e+01 1fxxA c.55.3.5 33726 1v54A 514 8.80e+01 f.24.1.1 100321 2au3A 407 8.81e+01 1e8yA 966 8.83e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1iy8A 267 8.85e+01 c.2.1.2 83774 1pyoB 105 8.87e+01 1u9cA 224 8.89e+01 1yueA 427 8.93e+01 1cxc 124 8.94e+01 1ycc a.3.1.1 15890 1u61A 138 8.96e+01 a.149.1.1 107696