(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0368 CL5998A, Chlorobium tepidum TLS, 174 res
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA
   2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA
   3 MKPLKEVAMSYMALAEAQKKLQGGMYADAAAESIKAMEISRTMPPEEAFDHDGFDGLCYAALAPA
   4 MKPLIQVGHSYLALSQGEQQLRDAHFEEAAESYKRALEVSRTIPAEEAFDYNGFDALCHTGLSGA
   5 MKPLKQVAQAYMALSEGEKRLKEEAFEEAVAEYRKAMDVTRTIPEEEVFDHDGFDALCHAGLSGA
   6 MKPLREVAQAYMSLSDAGMQLQAGSYRDAAESCRKAMEMSRTISLEEAFDHEGFDAFCFATLSEA
   7 MKPLKEVAMSYMALSEAQKKLEEGAYGEAAAESSKAMDFSKTMPPGETFDHEGFDALCYAVLASA
   8 MKPLKQVGESYFLLSQGEKQIEGAAFEEAEQSYRLAMTMARTIPTEEAFDYDGFDAIAHAGLSSA
   9 MKPLRSVADAYLALSVGERQLQDGLHAESAASCRSAMDAARSIPAEEAFDHAGFDAFVHAVLAGA
  10 MKPLREVAGAYAALGKAERELGEGLFEAAALSCRNAMDVSRTVPAEEVFDHAGFDAFCHAWLSRA


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM
   2 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM
   3 QAGLGEYAECLQSAERALRYFNRRGELQKDEGTQWIAVVFSRAVAMQETGSPEEAAKGFRIAGEM
   4 YVKLGRYEEALHSAEIGLRYFNRRGELHQDEGKQWIAAVFRRAQALEGIGRKEEALKAFQMAGEM
   5 FAKLGRYDECLLSADNALHYFNRRGELHQDEGKLWIAAVVNRAVGLAGTGRSSDALKAFRMADEM
   6 FWRLGRFEESLQSAEKALRYFNRRGELNQDEGKLWIAAVFSKAVALQETGSPEDAAGFFRTAGEM
   7 RAGLGEYDACLEAAGRALHYFNRRGELQQDEGKQWIAVVFSRGVAFHETGVYDEALKNLNMAGEM
   8 LIGLGRYNEALVSVAEALRYFNRRGDLHSAEGSLWIAVICNKARALESLGRKDEAIKYYRMAGEM
   9 LTGLGDYGTGLESADLALYYFNRRGELEEDGGKLWIRAVFSRGAALEGLGRRDEAFQSFRMACEM
  10 LGELGRFDESLAAAELSLGYFSRRGELHEETGKMWITAVMQRALAFDALGRQEEALVELQKGVEM


             140       150          160         170    
              |         |            |           |    
   1 IEERKGETPGKERMMEVAIDR.IAQLG.A.SNQ.QKKP.GYKAWWEFWS
   2 IEERKGETPGKERMMEVAIDR.IAQLG.A.SNQ.QKKP.GYKAWWEFWS
   3 IAERKGELPGREDMLREITER.LSVLGkE.SKP.AEKP.GYRAWWEFWS
   4 IAERKGEMSDKEELQRMTAEH.IASLQ.A.LTP.DKKPaGYKAWWEFWS
   5 VAERKGEIDDKERLQKMIADN.IAMLQ.T.SMP.EDTA.KRKAWWEFWS
   6 IAERKGELPGKEMLLQEIEER.LALLE.GsLNS.KRKS.GYKAWWEFWS
   7 ITERKGELPGKETMLKEIERRkTMLLE.G.EKS.QRKP.GYKAWWEFWS
   8 IAEKKGEIKQRDLLTELIEQG.LQRLE.G.AKPaTAKQ.GYKAWWEFWS
   9 LDERNGGMGGLEALRNAAAEA.LTRLG.R.ATE.PEKPaGYRAWWEFWS
  10 LQERKGEMAQKEAYLREASLR.IARLE.D.FQK.QAKPsGYKAWWEFWS