# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 9.99e-03 k.38.1.1 85481 2fbnA 198 1.64e-02 1elwA 118 1.73e-02 1a17 a.118.8.1 19207 2avpA 70 2.44e-02 1a17 166 7.15e-02 1a17 a.118.8.1 19206 1oshA 232 2.44e-01 a.123.1.1 93496 1ihgA 370 3.37e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1wfdA 93 5.16e-01 1hz4A 373 5.47e-01 a.118.8.2 65960 2ff4A 388 1.17e+00 1x0lA 333 2.81e+00 1za0A 275 2.99e+00 1tujA 123 3.38e+00 1w36B 1180 3.55e+00 1upvA 257 4.28e+00 1wm5A 208 4.70e+00 2dg5A 366 5.24e+00 1txgA 335 5.58e+00 1qqeA 292 5.91e+00 1qqeA a.118.8.1 19210 1n46A 258 6.41e+00 a.123.1.1 85315 1mlwA 301 7.17e+00 d.178.1.1 79289 1hh8A 213 7.22e+00 1e96B a.118.8.1 61042 1pq9A 253 7.37e+00 a.123.1.1 95004 1w79A 489 7.39e+00 1ovlA 271 7.81e+00 a.123.1.1 87455 1ux5A 411 7.95e+00 a.207.1.1 100144 1elrA 131 8.24e+00 1a17 a.118.8.1 19209 1xnfA 275 8.30e+00 3lynA 136 8.61e+00 1lis a.19.1.1 16413 1paqA 189 8.95e+00 a.118.1.14 94413 2gtrA 261 1.03e+01 1t01A 255 1.12e+01 a.24.9.1,a.24.9.1 106188,106189 2f3yA 148 1.13e+01 1ydiA 263 1.18e+01 1fnnA 389 1.22e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2a2oA 258 1.23e+01 1zvzA 279 1.25e+01 1orjA 130 1.28e+01 a.24.19.1 93456 2a2mA 258 1.31e+01 1g4yR 148 1.32e+01 1cll a.39.1.5 60252 1lis 136 1.34e+01 1lis a.19.1.1 16406 2lisA 136 1.34e+01 1lis a.19.1.1 16405 1x3lA 440 1.35e+01 1rkeA 262 1.36e+01 a.24.9.1,a.24.9.1 97608,97609 1vlgA 176 1.38e+01 a.25.1.1 108816 1vf1A 229 1.52e+01 1mswD 883 1.62e+01 e.8.1.3 79427 2d2yA 145 1.76e+01 2g0dA 409 1.93e+01 1xg7A 250 2.02e+01 1clc 639 2.04e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1i1iP 681 2.04e+01 1i1iP d.92.1.5 40297 1ek9A 428 2.06e+01 1ek9A f.5.1.1 43809 1jb0A 755 2.13e+01 1jb0A f.29.1.1 62820 1lfpA 249 2.16e+01 e.39.1.1 73885 1dc1A 323 2.27e+01 1dc1A c.52.1.11 33321 1nrgA 261 2.30e+01 b.45.1.1 80694 1gwuA 309 2.31e+01 a.93.1.1 83351 1knyA 253 2.33e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2bl2A 156 2.35e+01 2cx9A 387 2.37e+01 1ra6A 461 2.38e+01 e.8.1.4 104879 1wp1A 474 2.41e+01 2awiA 317 2.42e+01 2d29A 387 2.55e+01 1fjgT 106 2.55e+01 1fjfT a.7.6.1 16338 4crxA 322 2.62e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1u14A 172 2.62e+01 c.51.4.3 107579 1nktA 922 2.63e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1r0dA 206 2.65e+01 a.216.1.1 104715 1ws9A 387 2.73e+01 1khoA 370 2.77e+01 a.124.1.1,b.12.1.3 72489,72490 1z82A 335 2.78e+01 1ggzA 148 2.79e+01 a.39.1.5 70176 1nz6A 101 2.80e+01 a.2.3.1 86441 1lvaA 258 2.86e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1lk9A 448 2.86e+01 c.67.1.1 78057 2bl0C 142 2.91e+01 1exrA 148 2.96e+01 1cll a.39.1.5 17299 1e4iA 447 3.00e+01 1e70M c.1.8.4 59225 1gcb 454 3.02e+01 3gcb d.3.1.1 37034 2gaiA 633 3.15e+01 1x46A 150 3.19e+01 2cqsA 842 3.32e+01 1qlpA 394 3.36e+01 1ovaA e.1.1.1 42628 1ic2A 81 3.57e+01 h.1.5.1 62247 3gcb 470 3.65e+01 3gcb d.3.1.1 37032 1mtyG 162 3.68e+01 1mtyG a.23.3.1 16498 1w5tA 412 3.77e+01 1xo0A 324 3.77e+01 1kcfA 258 3.81e+01 a.140.2.1,c.55.3.7 68434,68435 1xdzA 240 3.81e+01 1nc5A 373 3.85e+01 a.102.1.6 85548 1r12A 258 3.86e+01 e.4.1.1 96780 1wvfA 520 4.12e+01 1qq8A 214 4.13e+01 1qq8A 1u61A 138 4.13e+01 a.149.1.1 107696 1i50B 1224 4.15e+01 e.29.1.1 61755 1n1fA 159 4.22e+01 a.26.1.3 79803 1uhgA 385 4.26e+01 e.1.1.1 88491 1j8uA 325 4.30e+01 d.178.1.1 71611 1laxA 370 4.31e+01 c.94.1.1 84576 2a0iA 330 4.43e+01 2c2aA 258 4.44e+01 1l3pA 102 4.48e+01 a.24.17.1 84520 1f6fA 199 4.50e+01 1f6fA a.26.1.1 16839 1z2cB 383 4.69e+01 2az0A 73 4.71e+01 1w0dA 337 4.73e+01 1i4dA 224 4.73e+01 h.4.7.1 61682 1zy4A 303 4.75e+01 1n45A 233 4.92e+01 a.132.1.1 79981 1x24A 180 4.92e+01 1ovaA 386 4.92e+01 1ovaA e.1.1.1 42619 2az2A 73 4.98e+01 1r9kA 172 5.14e+01 a.168.1.1 104869 1wdcC 156 5.14e+01 1wdcC a.39.1.5 17317 1zx4A 192 5.15e+01 4pah 308 5.20e+01 4pah d.178.1.1 42576 1aisB 200 5.22e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1h8eA 510 5.23e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1nigA 152 5.29e+01 a.25.2.1 85740 1f44A 324 5.31e+01 a.60.9.1,d.163.1.1 64982,64983 1w53A 84 5.32e+01 a.186.1.2 109175 1yarA 233 5.41e+01 1ugpB 226 5.41e+01 b.34.4.4 107832 1ireB 228 5.41e+01 b.34.4.4 76770 1pu6A 218 5.41e+01 a.96.1.5 95123 2sas 185 5.48e+01 2sas a.39.1.5 17258 1xtpA 254 5.54e+01 2g7sA 194 5.55e+01 1qnnA 191 5.55e+01 1avmA a.2.11.1,d.44.1.1 15792,38755 2spl 154 5.61e+01 1a6m a.1.1.2 15047 1twfB 1224 5.68e+01 1k3yA 221 5.69e+01 a.45.1.1,c.47.1.5 77245,77246 1wz9A 375 5.70e+01 1xteA 154 5.76e+01 1omp 370 5.76e+01 4mbp c.94.1.1 35778 2bp1A 360 5.98e+01 1wkuA 254 6.00e+01 1joyA 67 6.06e+01 1joyA a.30.2.1 16991 1v54E 109 6.08e+01 a.118.11.1 100326 1lw1A 177 6.09e+01 a.152.1.1 74290 1at3A 247 6.09e+01 1at3A b.57.1.1 27021 4mbp 370 6.12e+01 4mbp c.94.1.1 35777 1wchA 315 6.12e+01 1i5nA 146 6.20e+01 1i5nA a.24.10.3 61805 1uesA 191 6.36e+01 a.2.11.1,d.44.1.1 107798,107799 1wy6A 172 6.49e+01 7atjA 308 6.56e+01 1bgp a.93.1.1 18673 2ghjA 118 6.61e+01 1ib2A 349 6.65e+01 1ib2A a.118.1.8 62141 1de4C 640 6.66e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1pb6A 212 6.68e+01 a.4.1.9,a.121.1.1 88017,88018 1anf 370 6.72e+01 4mbp c.94.1.1 35776 2mgg 154 6.78e+01 1a6m a.1.1.2 15069 1gu9A 177 6.81e+01 a.152.1.1 65540 1ho8A 480 6.86e+01 1ho8A a.118.1.9 61107 1mvwA 840 6.87e+01 i.15.1.1 79523 2ck3A 510 6.89e+01 1e79A 510 6.89e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1mym 154 6.97e+01 1a6m a.1.1.2 15054 1ga3A 113 6.97e+01 1ga3A a.26.1.2 60411 1u2xA 474 7.06e+01 c.72.1.3 107622 1riqA 465 7.10e+01 a.203.1.1,d.104.1.1 97516,97517 2g3bA 208 7.15e+01 1rx0A 393 7.15e+01 a.29.3.1,e.6.1.1 98007,98008 1yruB 74 7.18e+01 1avsA 90 7.26e+01 1cll a.39.1.5 17226 1r9dA 787 7.30e+01 c.7.1.1 104865 2c6cA 707 7.35e+01 1x3kA 152 7.35e+01 1jogA 146 7.37e+01 a.24.16.2 77142 1t07A 94 7.44e+01 d.279.1.1 106196 2abqA 306 7.47e+01 1e17A 150 7.47e+01 2hfh a.4.5.14 16143 1a0cA 438 7.68e+01 1a0cA c.1.15.3 29529 1ym3A 215 7.72e+01 1wdgA 94 7.87e+01 h.3.3.1 109248 2g7gA 213 7.93e+01 1v4xB 146 8.06e+01 a.1.1.2 108364 1m7vA 363 8.07e+01 d.174.1.1 78748 1dz4A 414 8.10e+01 1phd a.104.1.1 18903 1pl5A 142 8.15e+01 h.1.23.1 104186 1gpjA 404 8.20e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d3dA 88 8.24e+01 1i1wA 303 8.26e+01 c.1.8.3 76732 2f8kA 88 8.27e+01 1lbeA 258 8.44e+01 1lbeA e.4.1.1 42773 1re9A 414 8.46e+01 2bnjA 303 8.53e+01 1evsA 187 8.64e+01 1evsA a.26.1.1 16845 1knqA 175 8.66e+01 c.37.1.17 72786 1bx4A 345 8.72e+01 1bx4A c.72.1.1 34935 1fcyA 236 8.77e+01 2lbd a.123.1.1 19282 2ethA 154 8.77e+01 1rzsA 61 8.84e+01 a.35.1.2 105139 1kxpD 458 8.84e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2crbA 97 8.85e+01 1zclA 180 8.91e+01 1vkfA 188 8.98e+01 c.1.29.1 108656