# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 6.36e-03 k.38.1.1 85481 1elwA 118 8.40e-03 1a17 a.118.8.1 19207 2avpA 70 1.17e-02 2fbnA 198 1.53e-02 1a17 166 2.20e-02 1a17 a.118.8.1 19206 1hz4A 373 1.25e-01 a.118.8.2 65960 1ihgA 370 1.51e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1oshA 232 1.59e-01 a.123.1.1 93496 2ff4A 388 2.74e-01 1wfdA 93 5.72e-01 1txgA 335 6.14e-01 1upvA 257 1.23e+00 1tujA 123 1.69e+00 1za0A 275 1.70e+00 1qqeA 292 1.79e+00 1qqeA a.118.8.1 19210 1i1iP 681 2.10e+00 1i1iP d.92.1.5 40297 1x0lA 333 2.11e+00 1ovlA 271 2.41e+00 a.123.1.1 87455 1dc1A 323 2.49e+00 1dc1A c.52.1.11 33321 1mswD 883 2.69e+00 e.8.1.3 79427 1mlwA 301 3.16e+00 d.178.1.1 79289 1jb0A 755 3.24e+00 1jb0A f.29.1.1 62820 1n46A 258 3.58e+00 a.123.1.1 85315 1wm5A 208 3.60e+00 1w36B 1180 3.76e+00 1xnfA 275 3.81e+00 1hh8A 213 3.95e+00 1e96B a.118.8.1 61042 2f3yA 148 4.14e+00 1pq9A 253 4.18e+00 a.123.1.1 95004 1qtrA 317 4.25e+00 1qtrA c.69.1.7 34660 1elrA 131 4.67e+00 1a17 a.118.8.1 19209 1lfpA 249 4.89e+00 e.39.1.1 73885 1x46A 150 6.26e+00 1l3pA 102 6.45e+00 a.24.17.1 84520 2gtrA 261 6.75e+00 1t01A 255 6.80e+00 a.24.9.1,a.24.9.1 106188,106189 1ggzA 148 6.80e+00 a.39.1.5 70176 1wm1A 317 6.89e+00 c.69.1.7 109405 1wdcC 156 7.87e+00 1wdcC a.39.1.5 17317 3lynA 136 7.89e+00 1lis a.19.1.1 16413 2bl0C 142 8.16e+00 1fnnA 389 8.18e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 1zvzA 279 8.24e+00 1g4yR 148 8.28e+00 1cll a.39.1.5 60252 1mtyG 162 8.87e+00 1mtyG a.23.3.1 16498 1nrgA 261 9.11e+00 b.45.1.1 80694 1rkeA 262 9.13e+00 a.24.9.1,a.24.9.1 97608,97609 1j8uA 325 9.41e+00 d.178.1.1 71611 4pah 308 9.41e+00 4pah d.178.1.1 42576 2cqsA 842 9.62e+00 2c2aA 258 9.72e+00 1w79A 489 9.81e+00 1orjA 130 9.88e+00 a.24.19.1 93456 1paqA 189 1.04e+01 a.118.1.14 94413 1epxA 370 1.10e+01 1fbaA c.1.10.1 29150 1f6fA 199 1.12e+01 1f6fA a.26.1.1 16839 2dg5A 366 1.16e+01 1lk9A 448 1.18e+01 c.67.1.1 78057 2etbA 256 1.22e+01 1lis 136 1.22e+01 1lis a.19.1.1 16406 2lisA 136 1.22e+01 1lis a.19.1.1 16405 2gaiA 633 1.22e+01 1u14A 172 1.25e+01 c.51.4.3 107579 1z82A 335 1.36e+01 1m7vA 363 1.37e+01 d.174.1.1 78748 1ek9A 428 1.39e+01 1ek9A f.5.1.1 43809 1exrA 148 1.41e+01 1cll a.39.1.5 17299 1ydiA 263 1.42e+01 1dz4A 414 1.45e+01 1phd a.104.1.1 18903 1sl8A 191 1.47e+01 1pb6A 212 1.50e+01 a.4.1.9,a.121.1.1 88017,88018 1uhgA 385 1.51e+01 e.1.1.1 88491 1vlgA 176 1.51e+01 a.25.1.1 108816 2cx9A 387 1.52e+01 1jjyA 636 1.54e+01 1jjyA 1su8A 636 1.54e+01 e.26.1.2 98999 1qlpA 394 1.58e+01 1ovaA e.1.1.1 42628 2g7gA 213 1.61e+01 1clc 639 1.63e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1syyA 346 1.66e+01 a.25.1.2 106126 2awiA 317 1.68e+01 1zejA 293 1.70e+01 1r9dA 787 1.74e+01 c.7.1.1 104865 1lvaA 258 1.74e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2d2yA 145 1.77e+01 2a2mA 258 1.80e+01 1x3lA 440 1.87e+01 2d29A 387 1.87e+01 1wz9A 375 1.88e+01 1khoA 370 1.88e+01 a.124.1.1,b.12.1.3 72489,72490 1rx0A 393 1.88e+01 a.29.3.1,e.6.1.1 98007,98008 1w0dA 337 1.90e+01 1tn4 159 1.93e+01 1ncx a.39.1.5 17248 2a2oA 258 1.96e+01 1xiuA 230 2.01e+01 1zx4A 192 2.01e+01 1e4iA 447 2.01e+01 1e70M c.1.8.4 59225 1xg7A 250 2.02e+01 1wy6A 172 2.04e+01 1ovaA 386 2.07e+01 1ovaA e.1.1.1 42619 2crbA 97 2.13e+01 1ux5A 411 2.21e+01 a.207.1.1 100144 1z2cB 383 2.23e+01 1ow4A 129 2.24e+01 a.39.2.1 93628 2aclB 244 2.26e+01 1zaiA 363 2.27e+01 1zsqA 528 2.29e+01 4crxA 322 2.33e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1tw9A 206 2.35e+01 a.45.1.1,c.47.1.5 107381,107382 1re9A 414 2.40e+01 1eemA 241 2.41e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1r0dA 206 2.43e+01 a.216.1.1 104715 2f71A 298 2.43e+01 1pu6A 218 2.44e+01 a.96.1.5 95123 1ka2A 499 2.51e+01 d.92.1.5 77305 1ift 263 2.64e+01 1mrj d.165.1.1 42211 1wp1A 474 2.66e+01 1xo0A 324 2.67e+01 1yrcA 414 2.69e+01 1lw3A 657 2.71e+01 b.55.1.8,c.45.1.3 91152,91153 1sig 339 2.75e+01 1sig a.177.1.1 19068 1wchA 315 2.85e+01 1ho8A 480 2.89e+01 1ho8A a.118.1.9 61107 2c6cA 707 2.89e+01 1ve0A 134 2.95e+01 1ornA 226 2.96e+01 a.96.1.1 87342 1f44A 324 2.99e+01 a.60.9.1,d.163.1.1 64982,64983 1ws9A 387 3.00e+01 1bx4A 345 3.02e+01 1bx4A c.72.1.1 34935 1qmqA 414 3.08e+01 1phd a.104.1.1 18907 1xdzA 240 3.09e+01 2d2sA 235 3.09e+01 1xkpC 143 3.15e+01 2bl2A 156 3.15e+01 1yruB 74 3.22e+01 1np3A 338 3.27e+01 a.100.1.2,c.2.1.6 85946,85947 1lxa 262 3.45e+01 1lxa b.81.1.1 28052 1uhkA 191 3.58e+01 1w5tA 412 3.60e+01 1vkuA 100 3.64e+01 a.28.1.1 108690 1vf1A 229 3.68e+01 1fcyA 236 3.69e+01 2lbd a.123.1.1 19282 1p68A 102 3.73e+01 k.8.1.1 94158 1is2A 661 3.74e+01 a.29.3.2,a.29.3.2,e.6.1.2 71382,71383,71384 2g0dA 409 3.74e+01 1g7fA 298 3.74e+01 1pty c.45.1.2 60330 1pa1A 310 3.81e+01 c.45.1.2 94404 1lw1A 177 3.82e+01 a.152.1.1 74290 1at3A 247 3.83e+01 1at3A b.57.1.1 27021 1fm9D 272 3.85e+01 2prgA a.123.1.1 19313 1t07A 94 3.91e+01 d.279.1.1 106196 1ic2A 81 4.01e+01 h.1.5.1 62247 1gcb 454 4.05e+01 3gcb d.3.1.1 37034 1cqxA 403 4.08e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1v54E 109 4.14e+01 a.118.11.1 100326 2g7sA 194 4.22e+01 2ethA 154 4.23e+01 1ug7A 128 4.23e+01 a.24.24.1 107824 1wdyA 285 4.24e+01 2ghjA 118 4.35e+01 2g3bA 208 4.39e+01 3gcb 470 4.42e+01 3gcb d.3.1.1 37032 1nktA 922 4.46e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 2abqA 306 4.48e+01 1zgyA 272 4.50e+01 1ca1 370 4.52e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1abrA 251 4.54e+01 1mrj d.165.1.1 42196 2aq9A 262 4.70e+01 1u6zA 513 4.71e+01 1ckiA 317 4.77e+01 1csn d.144.1.7 41660 1w53A 84 4.80e+01 a.186.1.2 109175 2d3dA 88 4.86e+01 1joyA 67 4.91e+01 1joyA a.30.2.1 16991 2f8kA 88 4.94e+01 1r9kA 172 4.94e+01 a.168.1.1 104869 1csn 298 4.95e+01 1csn d.144.1.7 41664 1zclA 180 4.95e+01 2bnxA 386 5.03e+01 1yc9A 442 5.04e+01 1w7jB 151 5.04e+01 1mla 309 5.06e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1i5nA 146 5.06e+01 1i5nA a.24.10.3 61805 1wlmA 151 5.08e+01 1ehyA 294 5.15e+01 1ehyA c.69.1.11 34693 1n83A 270 5.15e+01 a.123.1.1 80276 1guxA 218 5.25e+01 1guxA a.74.1.3 18388 1jogA 146 5.32e+01 a.24.16.2 77142 2cchB 260 5.36e+01 1xfxO 149 5.39e+01 1x24A 180 5.41e+01 1yarA 233 5.43e+01 1avsA 90 5.46e+01 1cll a.39.1.5 17226 1vpdA 299 5.48e+01 1dvkA 173 5.51e+01 1dvkA a.72.1.1 18319 1mvwA 840 5.52e+01 i.15.1.1 79523 1dceB 331 5.52e+01 1dceB a.102.4.3 18872 1lyvA 306 5.52e+01 c.45.1.2 74348 1adoA 363 5.55e+01 1fbaA c.1.10.1 29124 1fjgT 106 5.56e+01 1fjfT a.7.6.1 16338 1k3yA 221 5.57e+01 a.45.1.1,c.47.1.5 77245,77246 2ffeA 311 5.64e+01 1ytw 306 5.70e+01 1ytw c.45.1.2 32689 1gvhA 396 5.74e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ojaA 520 5.81e+01 c.3.1.2,d.16.1.5 93096,93097 1aisB 200 5.85e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1x91A 153 5.85e+01 1s3eA 520 5.86e+01 c.3.1.2,d.16.1.5 98426,98427 1kcfA 258 5.91e+01 a.140.2.1,c.55.3.7 68434,68435 1nigA 152 5.92e+01 a.25.2.1 85740 1nznA 126 5.93e+01 a.118.8.1 92382 1miwA 404 5.93e+01 a.173.1.1,d.218.1.4 79162,79163 1o7kA 131 6.05e+01 d.189.1.1 81144 1t1dA 100 6.05e+01 1t1dA d.42.1.2 38637 1aoa 275 6.06e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1cby 259 6.13e+01 1cby d.103.1.1 40705 1gu9A 177 6.22e+01 a.152.1.1 65540 1ptvA 321 6.26e+01 1pty c.45.1.2 32665 1zy4A 303 6.28e+01 1jk0A 419 6.30e+01 a.25.1.2 63142 1up8A 598 6.33e+01 a.111.1.2 99710 2az0A 73 6.34e+01 1qq8A 214 6.45e+01 1qq8A 1qb2A 109 6.54e+01 1qb2A a.36.1.1 17125 1uzbA 516 6.60e+01 c.82.1.1 100220 2az2A 73 6.62e+01 1kktA 511 6.73e+01 a.102.2.1 68687 1i36A 264 6.74e+01 a.100.1.8,c.2.1.6 71108,71109 1nz6A 101 6.74e+01 a.2.3.1 86441 2absA 383 6.86e+01 2bjkA 516 6.88e+01 1t5oA 351 6.91e+01 c.124.1.5 106459 1r12A 258 6.96e+01 e.4.1.1 96780 2gmyA 153 6.97e+01 1bmtA 246 6.99e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 2bp1A 360 6.99e+01 1mvcA 240 7.08e+01 a.123.1.1 79499 2cruA 118 7.11e+01 2abk 211 7.12e+01 2abk a.96.1.1 18743 1ugpB 226 7.13e+01 b.34.4.4 107832 1ireB 228 7.15e+01 b.34.4.4 76770 2sqcA 631 7.15e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1ng6A 148 7.27e+01 a.182.1.1 85670 1hleA 345 7.28e+01 1ovaA e.1.1.1 42618 1ntyA 311 7.31e+01 a.87.1.1,b.55.1.1 103873,103874 1xteA 154 7.34e+01 1lbeA 258 7.38e+01 1lbeA e.4.1.1 42773 1w5qA 337 7.41e+01 1wvvA 265 7.41e+01 1omrA 201 7.45e+01 a.39.1.5 93349 2occE 109 7.46e+01 2occE a.118.11.1 19224 2gfoA 396 7.50e+01 1uesA 191 7.63e+01 a.2.11.1,d.44.1.1 107798,107799 1jb9A 316 7.65e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1n45A 233 7.67e+01 a.132.1.1 79981 1ga3A 113 7.71e+01 1ga3A a.26.1.2 60411 1or4A 178 7.73e+01 a.1.1.2 93447 2bo4A 397 7.78e+01 1kxpD 458 7.80e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1pa2A 306 7.80e+01 1bgp a.93.1.1 18693 1ppjF 110 7.85e+01 f.27.1.1 104262 1knqA 175 7.86e+01 c.37.1.17 72786 1bdb 277 7.88e+01 1bdb c.2.1.2 29874 2b6cA 220 7.93e+01 1hnnA 282 7.95e+01 c.66.1.15 65895 1rxdA 159 8.00e+01 1y1xA 191 8.02e+01 2c5kT 95 8.04e+01 1mvwC 147 8.06e+01 i.15.1.1 79525 1zckA 154 8.06e+01 1dqeA 137 8.06e+01 1dqeA a.39.2.1 17388 1ouvA 273 8.07e+01 a.118.18.1 93570 1p4kA 295 8.22e+01 d.153.1.5 87772 2bk9A 153 8.23e+01 1de4C 640 8.30e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1yb0A 159 8.32e+01 1k87A 669 8.38e+01 a.176.1.1,c.1.23.2 77286,77287 1liiA 363 8.41e+01 c.72.1.1 73921 1u2eA 289 8.42e+01 1yixA 265 8.42e+01 1nc5A 373 8.48e+01 a.102.1.6 85548 1rdr 461 8.62e+01 1rdr e.8.1.4 43116 9gafA 295 8.63e+01 1apyA d.153.1.5 42008 2fmpA 335 8.63e+01 1w33A 181 8.67e+01 1ym3A 215 8.72e+01 1qgiA 259 8.79e+01 1qgiA d.2.1.7 37001 1o17A 345 8.83e+01 a.46.2.1,c.27.1.1 80765,80766 1pl5A 142 8.84e+01 h.1.23.1 104186 1r2fA 319 8.86e+01 1r2fA a.25.1.2 16800 2fldA 165 8.89e+01