# List of top-scoring protein chains for T0367.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 3.06e-16 1ufbA 127 2.93e-12 a.24.16.3 99331 1o3uA 135 2.03e-11 a.24.16.3 86615 1i9dA 141 1.63e+00 c.47.1.12 66098 1s3cA 141 1.63e+00 1j9bA 141 1.63e+00 c.47.1.12 66459 1sd8A 141 1.73e+00 1jzwA 140 1.84e+00 c.47.1.12 67883 1sk1A 140 1.96e+00 1s3dA 138 2.08e+00 1sk2A 140 2.09e+00 1sk0A 140 2.11e+00 1i60A 278 2.54e+00 c.1.15.4 71118 1ky3A 182 3.17e+00 c.37.1.8 73193 1gs5A 258 4.15e+00 c.73.1.2 70395 2gkwA 192 7.02e+00 1rf3A 200 7.64e+00 b.8.1.1,h.1.2.1 104915,104916 1xrhA 351 8.28e+00 2avyQ 83 9.41e+00 1y56B 382 9.88e+00 1flkA 228 1.00e+01 1d0aB b.8.1.1,h.1.2.1 23262,45469 1n5dA 288 1.27e+01 c.2.1.2 80030 1ac5 483 1.48e+01 1ac5 c.69.1.5 34653 1ub3A 220 1.51e+01 c.1.10.1 88395 1zo1I 501 1.63e+01 1iujA 106 1.74e+01 d.58.4.5 90701 1djlA 207 1.81e+01 1d4oA c.31.1.4 31746 1yxrA 77 2.12e+01 1yn9A 169 2.27e+01 1d4oA 184 2.30e+01 1d4oA c.31.1.4 31748 2ag5A 246 2.32e+01 2a87A 335 2.43e+01 2etbA 256 3.15e+01 1fovA 82 3.19e+01 1qfnA c.47.1.1 32770 1wr0A 81 3.41e+01 1u9iA 519 3.45e+01 1tf7A 525 3.53e+01 c.37.1.11,c.37.1.11 106838,106839 2etcA 274 3.54e+01 1sbf 253 3.83e+01 1led b.29.1.1 24102 1x40A 91 3.87e+01 1i94L 131 4.00e+01 1fjfL b.40.4.5 62003 1c3cA 429 4.02e+01 1c3cA a.127.1.1 19425 1c3uA 431 4.05e+01 1c3cA a.127.1.1 19427 1fjgL 135 4.07e+01 1fjfL b.40.4.5 25346 1g5aA 628 4.34e+01 b.71.1.1,c.1.8.1 65152,65153 3grx 82 4.34e+01 1aba c.47.1.1 32769 1j57A 143 4.50e+01 d.221.1.1 77079 1mvyA 628 4.69e+01 b.71.1.1,c.1.8.1 79547,79548 1jgiA 628 4.76e+01 b.71.1.1,c.1.8.1 66676,66677 2fsrA 195 4.77e+01 2avdA 219 4.95e+01 2cyjA 118 5.11e+01 1z5mA 286 5.16e+01 1uu9A 286 5.18e+01 d.144.1.7 100002 1h1wA 289 5.22e+01 d.144.1.7 83460 2biyA 310 5.39e+01 1uu3A 310 5.39e+01 d.144.1.7 99999 1ohvA 472 5.56e+01 c.67.1.4 93031 2c2lA 281 5.58e+01 2cpqA 91 5.68e+01 1mdoA 393 5.73e+01 c.67.1.4 79013 1a17 166 5.92e+01 1a17 a.118.8.1 19206 1jgcA 161 6.06e+01 a.25.1.1 66673 2b5gB 171 6.09e+01 2b3uA 171 6.09e+01 2fxfA 170 6.11e+01 2b5gA 171 6.12e+01 2g3tA 179 6.19e+01 1hfuA 503 6.23e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1a65A 504 6.27e+01 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1zv1A 65 6.57e+01 1izmA 184 7.12e+01 a.199.1.1 90725 1ckmA 330 7.37e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1cknB 330 7.43e+01 1ckmA b.40.4.6,d.142.2.3 25361,41588 1bvwA 360 7.46e+01 1bvwA c.6.1.1 30668 2bvwA 362 7.49e+01 1bvwA c.6.1.1 30666 1x9fB 145 7.61e+01 1lssA 140 7.70e+01 c.2.1.9 74246 1kamA 194 8.02e+01 c.26.1.3 72254 1l7tH 221 8.10e+01 b.1.1.1,b.1.1.2 77799,77800 1sznA 417 8.12e+01 b.71.1.1,c.1.8.1 106162,106163 2fo7A 136 8.34e+01 2bugA 140 8.35e+01 1zkzA 110 8.44e+01 1hxmB 242 8.46e+01 8fabA b.1.1.1,b.1.1.2 61369,61370 1iruD 248 8.49e+01 d.153.1.4 71355 8pchA 220 8.52e+01 1cs8A 1s09A 429 8.63e+01 c.67.1.4 98261 1h6qA 168 8.65e+01 1h6qA b.88.1.2 60692 1g9gA 629 8.92e+01 a.102.1.2 83279 1typA 487 8.92e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30509,30510,40186 1g9jA 629 8.93e+01 a.102.1.2 83280 1s08A 429 8.95e+01 c.67.1.4 98259 1fbwA 629 8.96e+01 1fce a.102.1.2 18838 2b0jA 358 8.96e+01