# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 3.02e-23 1ufbA 127 1.54e-18 a.24.16.3 99331 1o3uA 135 2.88e-16 a.24.16.3 86615 1i60A 278 2.96e-01 c.1.15.4 71118 1gtxA 472 4.90e-01 1gtxA 1c3cA 429 5.37e-01 1c3cA a.127.1.1 19425 1ohvA 472 7.97e-01 c.67.1.4 93031 1lqtA 456 1.17e+00 c.3.1.1,c.4.1.1 74198,74199 1j57A 143 4.31e+00 d.221.1.1 77079 1itf 165 5.78e+00 1b5l a.26.1.3 16899 1tvoA 368 6.22e+00 1hu4A 288 6.68e+00 1hu4A 1x42A 232 6.96e+00 1n5dA 288 7.28e+00 c.2.1.2 80030 1np8A 159 8.10e+00 a.39.1.8 92022 1mdoA 393 8.32e+00 c.67.1.4 79013 1v3wA 173 8.80e+00 b.81.1.5 100291 1wr2A 238 9.09e+00 2cfuA 658 9.19e+00 1ka2A 499 9.32e+00 d.92.1.5 77305 2avdA 219 9.77e+00 1ky3A 182 9.83e+00 c.37.1.8 73193 1bw9A 356 9.91e+00 1bw9A c.2.1.7,c.58.1.1 30274,33922 1qqfA 277 1.08e+01 1c3d a.102.4.4 18875 1pme 380 1.08e+01 1hcl d.144.1.7 41653 1adt 356 1.44e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1gy8A 397 1.53e+01 c.2.1.2 83376 1c1dA 355 1.55e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 3erk 364 1.58e+01 1hcl d.144.1.7 41654 1c3yA 108 1.70e+01 1c3yA a.39.2.1 17387 1cv8 174 1.85e+01 1cv8 d.3.1.1 37089 2aheA 267 1.87e+01 1wzdA 215 1.95e+01 1mek 120 2.14e+01 1erv c.47.1.2 32775 2b0tA 738 2.16e+01 2h00A 254 2.21e+01 1fjgL 135 2.53e+01 1fjfL b.40.4.5 25346 2evrA 246 2.53e+01 2anxA 146 2.66e+01 1r6fA 310 2.72e+01 e.46.1.1 97149 1khyA 148 2.73e+01 a.174.1.1 77410 1w9yA 319 2.74e+01 2b49A 287 2.79e+01 1wm3A 72 2.79e+01 1y8aA 332 2.80e+01 2bzoB 79 2.80e+01 1rdfA 267 2.81e+01 c.108.1.3 104884 2fmlA 273 2.83e+01 1ub3A 220 2.87e+01 c.1.10.1 88395 1yn9A 169 2.99e+01 1yviA 149 3.01e+01 1rqlA 267 3.10e+01 c.108.1.3 97750 1j0mA 752 3.11e+01 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1lssA 140 3.14e+01 c.2.1.9 74246 1iw0A 215 3.19e+01 a.132.1.1 83720 1f89A 291 3.20e+01 d.160.1.1 64988 1txqA 93 3.23e+01 1alvA 173 3.23e+01 1alvA a.39.1.8 17370 1orsC 132 3.26e+01 f.14.1.1 87353 2gv8A 447 3.30e+01 1j9bA 141 3.30e+01 c.47.1.12 66459 1i5pA 633 3.38e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1x1iA 752 3.47e+01 1k47A 337 3.49e+01 d.14.1.5,d.58.26.4 72040,72041 1fjgP 88 3.58e+01 1emwA d.27.1.1 38444 2cyjA 118 3.68e+01 1dv5A 80 3.73e+01 1dv5A a.28.1.3 59139 1nlwB 76 3.73e+01 a.38.1.1 80634 1te5A 257 3.83e+01 d.153.1.1 106795 1ac5 483 3.84e+01 1ac5 c.69.1.5 34653 1t6uA 117 3.90e+01 a.24.22.1 106584 1anv 356 3.98e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1erw 105 4.02e+01 1erv c.47.1.1 32745 1jh5A 144 4.09e+01 b.22.1.1 66697 3thiA 371 4.14e+01 2thiA c.94.1.1 35792 1nkpB 83 4.20e+01 a.38.1.1 80574 1t9iA 163 4.27e+01 1dvjA 246 4.32e+01 1dvjA c.1.2.3 28546 1sauA 115 4.34e+01 1zv1A 65 4.41e+01 1c3d 294 4.51e+01 1c3d a.102.4.4 18874 1s3cA 141 4.65e+01 1kxgA 152 4.66e+01 b.22.1.1 73145 1phm 310 4.72e+01 1phm b.121.1.2,b.121.1.2 59015,59016 1ydwA 362 4.72e+01 1z23A 163 4.73e+01 1v9dA 340 4.79e+01 a.207.1.1 100535 1x1zA 252 4.83e+01 1km4A 247 4.88e+01 c.1.2.3 72740 1an2A 86 5.13e+01 1an2A a.38.1.1 17130 1nz6A 101 5.15e+01 a.2.3.1 86441 2thiA 379 5.16e+01 2thiA c.94.1.1 35794 2hc1A 291 5.19e+01 1u5dA 108 5.24e+01 1dlc 584 5.26e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1aw7A 194 5.29e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1tzvA 142 5.31e+01 a.79.1.1 107526 1aiu 105 5.35e+01 1erv c.47.1.1 32746 1wjgA 137 5.39e+01 1mvoA 136 5.39e+01 c.23.1.1 79513 1sdwA 314 5.49e+01 b.121.1.2,b.121.1.2 98810,98811 1w97L 246 5.55e+01 1gs5A 258 5.55e+01 c.73.1.2 70395 1aow 309 5.59e+01 1avc a.65.1.1 18152 1kde 70 5.65e+01 1msi b.85.1.1 28310 1ts3A 194 5.72e+01 1aw7A b.40.2.2,d.15.6.1 25168,37757 1d4xG 126 5.76e+01 1d0nA d.109.1.1 59109 1p4xA 250 5.77e+01 a.4.5.28,a.4.5.28 87784,87785 2ayuA 417 5.96e+01 1ann 318 5.98e+01 1avc a.65.1.1 18151 1jwiB 125 6.11e+01 d.169.1.1 67384 1iujA 106 6.11e+01 d.58.4.5 90701 1iv3A 152 6.14e+01 d.79.5.1 76828 1sjiA 350 6.16e+01 1vf1A 229 6.19e+01 1jqeA 292 6.24e+01 c.66.1.19 71789 2bfdA 400 6.27e+01 1u6mA 199 6.31e+01 1vqwA 457 6.31e+01 1b7kA 66 6.56e+01 1msi b.85.1.1 28306 2ge7A 108 6.56e+01 1x6vA 630 6.71e+01 1ame 67 6.76e+01 1msi b.85.1.1 28285 1derA 547 6.77e+01 1derA 1yj7A 171 6.78e+01 3tss 194 6.78e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1g9zA 152 6.99e+01 1bp7A d.95.2.1 60408 1wwpA 119 7.04e+01 1b7jA 66 7.10e+01 1msi b.85.1.1 28283 1wd6A 123 7.11e+01 1o2dA 371 7.21e+01 e.22.1.2 86591 2iu5A 195 7.41e+01 1o5hA 214 7.51e+01 a.191.1.1 92497 1go3F 107 7.72e+01 a.60.8.2 65407 1gr5A 547 7.74e+01 i.16.1.1 65478 2bmaA 470 7.94e+01 1y5oA 115 8.07e+01 1dvjC 246 8.09e+01 1dvjA c.1.2.3 28548 2au3A 407 8.11e+01 1x1fA 149 8.12e+01 2ghcX 261 8.14e+01 2b5gA 171 8.16e+01 1hg7A 66 8.16e+01 1msi b.85.1.1 28280 1b7iA 66 8.20e+01 1msi b.85.1.1 28288 1c2n 137 8.20e+01 1ycc a.3.1.1 15889 1emwA 88 8.27e+01 1emwA d.27.1.1 38448 1uasA 362 8.32e+01 b.71.1.1,c.1.8.1 88388,88389 2g64A 140 8.43e+01 1gq2A 555 8.49e+01 c.2.1.7,c.58.1.3 70308,70309 1g6sA 427 8.61e+01 1eps d.68.2.2 39584 1xkzA 255 8.64e+01 1msi 70 8.69e+01 1msi b.85.1.1 28281 1wwuA 99 8.71e+01 1biqA 375 8.85e+01 1xikA a.25.1.2 16786 1udg 244 8.87e+01 3eugA c.18.1.1 31016 1tf4A 605 8.92e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 1umkA 275 8.97e+01