# TARGET T0367 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0367.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 66 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.004 0.001 0.001 0.035 0.044 0.915 2 D 0.016 0.006 0.004 0.308 0.056 0.610 3 E 0.003 0.001 0.006 0.954 0.013 0.023 4 L 0.004 0.001 0.005 0.969 0.010 0.011 5 E 0.002 0.001 0.004 0.983 0.006 0.005 6 L 0.002 0.001 0.006 0.983 0.005 0.004 7 R 0.001 0.001 0.004 0.990 0.003 0.003 8 I 0.001 0.001 0.002 0.992 0.003 0.002 9 R 0.001 0.001 0.002 0.994 0.002 0.001 10 K 0.001 0.001 0.003 0.991 0.004 0.002 11 A 0.001 0.001 0.004 0.987 0.005 0.004 12 E 0.001 0.001 0.004 0.988 0.006 0.002 13 K 0.001 0.001 0.007 0.977 0.011 0.004 14 L 0.001 0.001 0.006 0.958 0.014 0.022 15 V 0.001 0.001 0.008 0.941 0.023 0.028 16 Q 0.001 0.001 0.009 0.974 0.012 0.005 17 D 0.001 0.001 0.009 0.967 0.015 0.009 18 A 0.001 0.001 0.009 0.970 0.011 0.010 19 K 0.001 0.001 0.009 0.975 0.010 0.005 20 K 0.001 0.001 0.009 0.971 0.012 0.007 21 E 0.001 0.001 0.007 0.971 0.011 0.011 22 F 0.001 0.001 0.010 0.966 0.014 0.009 23 E 0.001 0.001 0.008 0.965 0.018 0.007 24 M 0.001 0.001 0.009 0.925 0.027 0.039 25 G 0.004 0.001 0.011 0.255 0.151 0.578 26 L 0.014 0.009 0.015 0.400 0.125 0.436 27 Y 0.009 0.001 0.008 0.898 0.037 0.046 28 E 0.002 0.001 0.003 0.980 0.009 0.006 29 R 0.001 0.001 0.004 0.988 0.005 0.002 30 C 0.001 0.001 0.005 0.985 0.005 0.003 31 C 0.001 0.001 0.003 0.990 0.003 0.003 32 S 0.001 0.001 0.002 0.992 0.003 0.003 33 T 0.001 0.001 0.002 0.996 0.001 0.001 34 A 0.001 0.001 0.002 0.996 0.001 0.001 35 Y 0.001 0.001 0.001 0.997 0.001 0.001 36 Y 0.001 0.001 0.001 0.999 0.001 0.001 37 A 0.001 0.001 0.001 0.999 0.001 0.001 38 M 0.001 0.001 0.001 0.999 0.001 0.001 39 F 0.001 0.001 0.001 0.998 0.001 0.001 40 H 0.001 0.001 0.002 0.997 0.001 0.001 41 A 0.001 0.001 0.002 0.996 0.002 0.001 42 A 0.001 0.001 0.001 0.996 0.002 0.001 43 K 0.001 0.001 0.002 0.995 0.002 0.001 44 A 0.001 0.001 0.004 0.992 0.004 0.001 45 M 0.001 0.001 0.004 0.990 0.004 0.001 46 L 0.001 0.001 0.006 0.984 0.007 0.002 47 L 0.001 0.001 0.012 0.962 0.018 0.006 48 G 0.002 0.001 0.018 0.827 0.077 0.075 49 Y 0.004 0.008 0.034 0.446 0.180 0.328 50 G 0.004 0.003 0.005 0.011 0.173 0.803 51 R 0.019 0.016 0.011 0.012 0.224 0.718 52 D 0.043 0.046 0.020 0.014 0.364 0.513 53 S 0.031 0.023 0.087 0.039 0.468 0.352 54 K 0.029 0.015 0.151 0.085 0.412 0.307 55 T 0.029 0.015 0.091 0.117 0.349 0.399 56 H 0.018 0.009 0.057 0.445 0.293 0.178 57 R 0.011 0.005 0.020 0.640 0.200 0.124 58 G 0.005 0.003 0.010 0.893 0.061 0.027 59 T 0.006 0.002 0.006 0.959 0.016 0.010 60 I 0.006 0.001 0.010 0.962 0.012 0.009 61 Y 0.007 0.001 0.014 0.957 0.014 0.008 62 L 0.007 0.001 0.017 0.953 0.013 0.009 63 I 0.007 0.001 0.014 0.955 0.015 0.009 64 W 0.006 0.001 0.035 0.913 0.031 0.014 65 E 0.006 0.001 0.028 0.902 0.043 0.021 66 C 0.006 0.003 0.020 0.885 0.047 0.040 67 R 0.007 0.003 0.023 0.840 0.052 0.074 68 E 0.007 0.002 0.043 0.828 0.045 0.075 69 E 0.007 0.004 0.037 0.784 0.089 0.080 70 L 0.004 0.002 0.039 0.735 0.085 0.134 71 G 0.004 0.002 0.005 0.035 0.141 0.812 72 L 0.015 0.015 0.013 0.073 0.167 0.717 73 S 0.014 0.012 0.010 0.074 0.154 0.736 74 D 0.004 0.003 0.079 0.563 0.176 0.177 75 D 0.002 0.001 0.086 0.792 0.082 0.037 76 D 0.003 0.001 0.078 0.829 0.064 0.024 77 C 0.005 0.001 0.039 0.856 0.064 0.035 78 S 0.005 0.001 0.025 0.896 0.043 0.029 79 K 0.008 0.002 0.022 0.900 0.042 0.026 80 L 0.009 0.002 0.023 0.879 0.051 0.036 81 S 0.014 0.001 0.036 0.841 0.067 0.040 82 R 0.018 0.002 0.040 0.815 0.075 0.050 83 A 0.020 0.005 0.023 0.777 0.070 0.104 84 F 0.029 0.005 0.034 0.664 0.106 0.162 85 D 0.043 0.012 0.039 0.500 0.167 0.238 86 L 0.034 0.010 0.044 0.468 0.182 0.263 87 R 0.032 0.017 0.052 0.368 0.245 0.286 88 E 0.027 0.018 0.059 0.276 0.303 0.317 89 E 0.015 0.010 0.138 0.209 0.384 0.245 90 S 0.013 0.010 0.192 0.129 0.416 0.240 91 D 0.016 0.018 0.184 0.091 0.506 0.184 92 Y 0.013 0.014 0.142 0.145 0.451 0.236 93 G 0.015 0.011 0.037 0.050 0.549 0.337 94 I 0.035 0.017 0.027 0.081 0.476 0.364 95 Y 0.071 0.033 0.031 0.059 0.403 0.404 96 K 0.119 0.030 0.023 0.054 0.298 0.476 97 E 0.108 0.034 0.019 0.032 0.233 0.574 98 V 0.074 0.035 0.003 0.015 0.126 0.747 99 S 0.025 0.011 0.001 0.012 0.042 0.909 100 K 0.001 0.001 0.014 0.976 0.005 0.005 101 D 0.001 0.001 0.018 0.976 0.005 0.001 102 L 0.001 0.001 0.018 0.977 0.004 0.001 103 A 0.001 0.001 0.003 0.993 0.002 0.002 104 I 0.001 0.001 0.002 0.995 0.002 0.001 105 K 0.001 0.001 0.005 0.987 0.005 0.002 106 I 0.001 0.001 0.004 0.990 0.004 0.002 107 L 0.001 0.001 0.005 0.987 0.006 0.002 108 K 0.001 0.001 0.006 0.984 0.007 0.003 109 D 0.001 0.001 0.007 0.973 0.010 0.009 110 A 0.001 0.001 0.004 0.989 0.004 0.003 111 E 0.001 0.001 0.005 0.990 0.004 0.001 112 I 0.001 0.001 0.005 0.990 0.004 0.001 113 F 0.001 0.001 0.003 0.994 0.002 0.001 114 V 0.001 0.001 0.001 0.996 0.001 0.001 115 Q 0.001 0.001 0.001 0.997 0.001 0.001 116 K 0.001 0.001 0.001 0.996 0.002 0.001 117 A 0.001 0.001 0.001 0.993 0.003 0.002 118 K 0.001 0.001 0.003 0.992 0.003 0.001 119 N 0.001 0.001 0.003 0.991 0.004 0.002 120 A 0.001 0.001 0.003 0.979 0.006 0.012 121 V 0.001 0.001 0.008 0.959 0.012 0.019 122 N 0.001 0.001 0.009 0.918 0.031 0.041 123 K 0.001 0.001 0.014 0.627 0.079 0.278 124 N 0.001 0.001 0.001 0.029 0.055 0.914 125 R 0.001 0.001 0.001 0.004 0.026 0.969