# TARGET T0367 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0367.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 66 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.978 0.001 0.001 0.007 0.001 0.001 0.001 0.010 0.001 0.001 0.001 2 D 0.001 0.008 0.856 0.001 0.001 0.117 0.001 0.001 0.001 0.007 0.004 0.002 0.003 3 E 0.001 0.009 0.129 0.001 0.012 0.791 0.001 0.001 0.003 0.029 0.016 0.002 0.007 4 L 0.001 0.001 0.033 0.001 0.016 0.926 0.001 0.001 0.001 0.009 0.008 0.002 0.003 5 E 0.001 0.001 0.005 0.001 0.004 0.982 0.001 0.001 0.001 0.003 0.003 0.001 0.001 6 L 0.001 0.001 0.009 0.001 0.002 0.979 0.001 0.001 0.001 0.003 0.004 0.001 0.001 7 R 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.005 0.001 0.001 8 I 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 10 K 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 11 A 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 12 E 0.001 0.001 0.002 0.001 0.002 0.986 0.001 0.001 0.001 0.002 0.009 0.001 0.001 13 K 0.001 0.001 0.003 0.001 0.003 0.956 0.001 0.001 0.001 0.003 0.034 0.001 0.001 14 L 0.001 0.001 0.004 0.001 0.003 0.942 0.001 0.001 0.001 0.004 0.047 0.001 0.001 15 V 0.001 0.001 0.010 0.001 0.002 0.968 0.001 0.001 0.001 0.007 0.013 0.001 0.001 16 Q 0.001 0.001 0.003 0.001 0.003 0.980 0.001 0.001 0.001 0.002 0.011 0.001 0.001 17 D 0.001 0.001 0.002 0.001 0.003 0.982 0.001 0.001 0.001 0.001 0.012 0.001 0.001 18 A 0.001 0.001 0.003 0.001 0.003 0.982 0.001 0.001 0.001 0.002 0.010 0.001 0.001 19 K 0.001 0.001 0.006 0.001 0.004 0.972 0.001 0.001 0.001 0.004 0.013 0.001 0.001 20 K 0.001 0.001 0.004 0.001 0.005 0.958 0.001 0.001 0.001 0.003 0.029 0.001 0.001 21 E 0.001 0.001 0.006 0.001 0.006 0.946 0.001 0.001 0.001 0.004 0.038 0.001 0.001 22 F 0.001 0.001 0.022 0.001 0.017 0.893 0.001 0.001 0.001 0.011 0.055 0.001 0.001 23 E 0.001 0.002 0.029 0.001 0.032 0.772 0.001 0.001 0.001 0.013 0.150 0.001 0.001 24 M 0.001 0.001 0.023 0.001 0.025 0.553 0.001 0.001 0.001 0.030 0.366 0.001 0.001 25 G 0.001 0.002 0.112 0.001 0.019 0.358 0.001 0.001 0.001 0.150 0.357 0.001 0.001 26 L 0.001 0.010 0.225 0.001 0.017 0.580 0.001 0.001 0.002 0.054 0.107 0.001 0.003 27 Y 0.001 0.002 0.055 0.001 0.009 0.882 0.001 0.001 0.003 0.022 0.025 0.001 0.002 28 E 0.001 0.001 0.012 0.001 0.004 0.968 0.001 0.001 0.001 0.006 0.008 0.001 0.001 29 R 0.001 0.001 0.005 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.006 0.001 0.001 30 C 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 31 C 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 32 S 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 33 T 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 34 A 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 M 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 H 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 M 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 46 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 47 L 0.001 0.001 0.001 0.001 0.002 0.947 0.001 0.001 0.001 0.001 0.049 0.001 0.001 48 G 0.001 0.001 0.007 0.001 0.004 0.781 0.001 0.001 0.001 0.010 0.196 0.001 0.001 49 Y 0.001 0.002 0.069 0.001 0.010 0.309 0.001 0.001 0.001 0.085 0.524 0.001 0.001 50 G 0.001 0.009 0.330 0.002 0.011 0.027 0.001 0.001 0.001 0.230 0.386 0.001 0.002 51 R 0.001 0.016 0.635 0.001 0.007 0.012 0.001 0.001 0.004 0.276 0.035 0.007 0.007 52 D 0.001 0.027 0.725 0.001 0.015 0.020 0.001 0.001 0.017 0.137 0.029 0.004 0.024 53 S 0.001 0.025 0.429 0.004 0.147 0.132 0.001 0.001 0.011 0.104 0.130 0.004 0.012 54 K 0.001 0.014 0.241 0.003 0.173 0.201 0.001 0.001 0.009 0.130 0.212 0.008 0.007 55 T 0.001 0.018 0.255 0.001 0.164 0.292 0.001 0.001 0.011 0.090 0.150 0.003 0.015 56 H 0.001 0.006 0.205 0.001 0.064 0.521 0.001 0.001 0.006 0.103 0.084 0.004 0.005 57 R 0.001 0.003 0.035 0.001 0.035 0.705 0.001 0.001 0.001 0.049 0.168 0.002 0.002 58 G 0.001 0.007 0.041 0.001 0.033 0.713 0.001 0.001 0.001 0.049 0.149 0.002 0.003 59 T 0.001 0.003 0.037 0.001 0.016 0.905 0.001 0.001 0.002 0.010 0.018 0.002 0.005 60 I 0.001 0.001 0.006 0.001 0.018 0.960 0.001 0.001 0.001 0.003 0.010 0.001 0.001 61 Y 0.001 0.001 0.004 0.001 0.014 0.965 0.001 0.001 0.001 0.002 0.012 0.001 0.001 62 L 0.001 0.001 0.002 0.001 0.012 0.962 0.001 0.001 0.001 0.002 0.019 0.001 0.001 63 I 0.001 0.001 0.010 0.001 0.007 0.964 0.001 0.001 0.001 0.005 0.011 0.001 0.001 64 W 0.001 0.001 0.004 0.001 0.015 0.956 0.001 0.001 0.001 0.003 0.021 0.001 0.001 65 E 0.001 0.001 0.005 0.001 0.012 0.952 0.001 0.001 0.001 0.003 0.026 0.001 0.001 66 C 0.001 0.001 0.018 0.001 0.014 0.922 0.001 0.001 0.001 0.011 0.030 0.001 0.001 67 R 0.001 0.007 0.060 0.002 0.026 0.800 0.001 0.001 0.003 0.046 0.049 0.002 0.006 68 E 0.001 0.002 0.050 0.001 0.026 0.801 0.001 0.001 0.007 0.037 0.065 0.006 0.004 69 E 0.001 0.003 0.074 0.001 0.022 0.785 0.001 0.001 0.004 0.020 0.083 0.001 0.005 70 L 0.001 0.012 0.126 0.001 0.020 0.533 0.001 0.001 0.003 0.072 0.226 0.002 0.004 71 G 0.001 0.007 0.288 0.002 0.017 0.124 0.001 0.001 0.002 0.106 0.447 0.004 0.002 72 L 0.001 0.009 0.602 0.001 0.013 0.061 0.001 0.001 0.003 0.202 0.100 0.002 0.007 73 S 0.001 0.010 0.714 0.001 0.013 0.074 0.001 0.001 0.002 0.118 0.059 0.003 0.006 74 D 0.001 0.004 0.259 0.001 0.057 0.502 0.001 0.001 0.001 0.102 0.071 0.001 0.002 75 D 0.001 0.002 0.044 0.001 0.093 0.749 0.001 0.001 0.001 0.034 0.076 0.001 0.001 76 D 0.001 0.002 0.021 0.001 0.103 0.794 0.001 0.001 0.001 0.013 0.063 0.001 0.002 77 C 0.001 0.002 0.037 0.001 0.045 0.863 0.001 0.001 0.001 0.017 0.030 0.001 0.003 78 S 0.002 0.003 0.034 0.001 0.036 0.856 0.001 0.001 0.002 0.014 0.046 0.004 0.003 79 K 0.002 0.002 0.034 0.001 0.025 0.851 0.001 0.001 0.003 0.018 0.055 0.002 0.006 80 L 0.001 0.003 0.061 0.001 0.034 0.845 0.001 0.001 0.003 0.017 0.026 0.003 0.005 81 S 0.001 0.003 0.029 0.001 0.098 0.779 0.001 0.001 0.001 0.017 0.063 0.003 0.005 82 R 0.001 0.002 0.024 0.001 0.092 0.719 0.001 0.001 0.002 0.021 0.131 0.003 0.005 83 A 0.001 0.003 0.061 0.001 0.110 0.642 0.001 0.001 0.003 0.024 0.147 0.001 0.006 84 F 0.001 0.008 0.166 0.002 0.108 0.462 0.001 0.001 0.004 0.126 0.107 0.007 0.008 85 D 0.001 0.006 0.202 0.002 0.168 0.382 0.001 0.001 0.004 0.047 0.158 0.008 0.020 86 L 0.002 0.007 0.103 0.001 0.215 0.399 0.001 0.001 0.006 0.054 0.197 0.004 0.011 87 R 0.002 0.023 0.239 0.003 0.064 0.290 0.001 0.001 0.007 0.200 0.142 0.011 0.017 88 E 0.001 0.011 0.479 0.004 0.050 0.191 0.001 0.001 0.005 0.116 0.113 0.012 0.016 89 E 0.001 0.011 0.224 0.002 0.167 0.238 0.001 0.001 0.004 0.090 0.249 0.003 0.012 90 S 0.001 0.008 0.174 0.002 0.217 0.159 0.001 0.001 0.004 0.128 0.291 0.007 0.007 91 D 0.002 0.018 0.211 0.003 0.209 0.167 0.001 0.001 0.008 0.111 0.243 0.008 0.018 92 Y 0.003 0.028 0.319 0.009 0.068 0.079 0.002 0.001 0.017 0.257 0.161 0.025 0.032 93 G 0.004 0.016 0.384 0.007 0.051 0.051 0.002 0.001 0.014 0.174 0.225 0.028 0.044 94 I 0.005 0.037 0.360 0.002 0.061 0.081 0.002 0.001 0.029 0.178 0.174 0.022 0.047 95 Y 0.003 0.032 0.460 0.003 0.042 0.053 0.001 0.001 0.020 0.250 0.069 0.012 0.053 96 K 0.002 0.013 0.509 0.005 0.027 0.041 0.001 0.001 0.017 0.258 0.050 0.049 0.028 97 E 0.001 0.023 0.810 0.002 0.007 0.020 0.001 0.001 0.007 0.032 0.031 0.003 0.065 98 V 0.001 0.047 0.812 0.001 0.001 0.010 0.001 0.001 0.005 0.070 0.011 0.035 0.007 99 S 0.001 0.007 0.910 0.001 0.001 0.015 0.001 0.001 0.002 0.045 0.001 0.001 0.019 100 K 0.001 0.001 0.001 0.001 0.004 0.988 0.001 0.001 0.001 0.001 0.006 0.001 0.001 101 D 0.001 0.001 0.001 0.001 0.006 0.985 0.001 0.001 0.001 0.001 0.008 0.001 0.001 102 L 0.001 0.001 0.001 0.001 0.010 0.982 0.001 0.001 0.001 0.001 0.006 0.001 0.001 103 A 0.001 0.001 0.004 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 K 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 106 I 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 107 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 108 K 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 109 D 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.010 0.001 0.001 110 A 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 111 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 113 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 114 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 117 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 118 K 0.001 0.001 0.002 0.001 0.003 0.985 0.001 0.001 0.001 0.002 0.008 0.001 0.001 119 N 0.001 0.001 0.002 0.001 0.005 0.967 0.001 0.001 0.001 0.002 0.023 0.001 0.001 120 A 0.001 0.001 0.004 0.001 0.009 0.948 0.001 0.001 0.001 0.003 0.036 0.001 0.001 121 V 0.001 0.003 0.031 0.001 0.010 0.871 0.001 0.001 0.001 0.030 0.052 0.001 0.001 122 N 0.001 0.006 0.128 0.001 0.034 0.572 0.001 0.001 0.001 0.047 0.206 0.002 0.003 123 K 0.001 0.002 0.104 0.001 0.026 0.316 0.001 0.001 0.001 0.084 0.466 0.001 0.002 124 N 0.001 0.002 0.600 0.001 0.012 0.074 0.001 0.001 0.001 0.084 0.225 0.001 0.002 125 R 0.001 0.002 0.963 0.001 0.002 0.004 0.001 0.001 0.001 0.024 0.004 0.001 0.001