# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 8.36e-18 1o3uA 135 2.98e-16 a.24.16.3 86615 1ufbA 127 5.53e-16 a.24.16.3 99331 1wwpA 119 2.25e-01 1na3A 91 5.90e-01 k.38.1.1 85481 16vpA 366 9.45e-01 16vpA d.180.1.1 42601 1n97A 389 9.75e-01 a.104.1.1 80335 1r71A 178 2.23e+00 a.4.14.1 104823 1qhdA 398 2.88e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1sz9A 144 3.27e+00 a.118.9.4 106139 1r9kA 172 3.91e+00 a.168.1.1 104869 1gzsB 165 4.16e+00 a.168.1.1 76425 1j30A 144 4.38e+00 a.25.1.1 90806 1t0qA 498 4.45e+00 a.25.1.2 106220 1e7uA 961 4.71e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1v3wA 173 4.93e+00 b.81.1.5 100291 1khoA 370 7.30e+00 a.124.1.1,b.12.1.3 72489,72490 1dwkA 156 7.43e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 1dofA 403 7.93e+00 1c3cA a.127.1.1 19429 1e8yA 966 8.19e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1ci4A 89 9.24e+00 1qckA a.60.5.1 17970 2a61A 145 9.32e+00 2gtqA 867 9.91e+00 1aun 208 1.03e+01 1thv b.25.1.1 23900 1ry6A 360 1.06e+01 c.37.1.9 98090 1w3iA 293 1.07e+01 c.1.10.1 109152 1lb3A 182 1.07e+01 a.25.1.1 77873 1nv8A 284 1.08e+01 c.66.1.30 86224 1rrmA 386 1.14e+01 e.22.1.2 105081 2f42A 179 1.19e+01 2c1iA 431 1.36e+01 2cfuA 658 1.39e+01 1wy5A 317 1.43e+01 1bc5A 269 1.45e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1af7 274 1.45e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1sflA 238 1.46e+01 2bptA 861 1.56e+01 2d29A 387 1.59e+01 1yz7A 188 1.59e+01 1fs7A 485 1.61e+01 1qdbA a.138.1.3 19691 1rr7A 129 1.71e+01 a.4.1.14 105075 2iu1A 208 1.83e+01 1qhtA 775 1.85e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1m0kA 262 1.86e+01 f.13.1.1 78344 1pl4A 198 1.88e+01 a.2.11.1,d.44.1.1 94854,94855 1u6zA 513 1.88e+01 1h4rA 314 1.88e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1oapA 109 1.88e+01 d.79.7.1 92706 2fulA 178 1.93e+01 2fgeA 995 2.03e+01 1ca1 370 2.03e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2ftzA 284 2.08e+01 1t6aA 126 2.17e+01 d.129.8.1 106555 1sa3A 262 2.23e+01 c.52.1.23 105400 1r29A 127 2.23e+01 d.42.1.1 96856 1j5sA 463 2.25e+01 c.1.9.8 71580 1mtyB 384 2.26e+01 1mtyB a.25.1.2 16740 1wkbA 810 2.27e+01 1ouvA 273 2.28e+01 a.118.18.1 93570 1tffA 234 2.29e+01 d.3.1.11 106854 1y0kA 209 2.30e+01 2ak3A 226 2.41e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1vk5A 157 2.42e+01 a.220.1.1 108635 2ag5A 246 2.50e+01 1pujA 282 2.51e+01 c.37.1.8 88294 2bikB 313 2.58e+01 1aua 296 2.68e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1spvA 184 2.73e+01 c.50.1.2 98957 2g7sA 194 2.75e+01 1rm6A 769 2.81e+01 2fmlA 273 2.88e+01 1ee8A 266 2.90e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1tqgA 105 2.91e+01 a.24.10.3 107224 1bf5A 545 2.92e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1hw5A 210 3.00e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1wc3A 219 3.13e+01 1tw9A 206 3.14e+01 a.45.1.1,c.47.1.5 107381,107382 2a2fX 325 3.21e+01 1wy9A 147 3.26e+01 1reqA 727 3.32e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1zd8A 227 3.37e+01 1bm9A 122 3.39e+01 1bm9A a.4.5.7 16116 1jmsA 381 3.49e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1uwkA 557 3.59e+01 e.51.1.1 108065 1elkA 157 3.60e+01 1dvpA a.118.9.2 19217 1f60A 458 3.63e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1xx1A 285 3.67e+01 1uu3A 310 3.74e+01 d.144.1.7 99999 1oshA 232 3.83e+01 a.123.1.1 93496 1mtyD 512 3.85e+01 1mhyD a.25.1.2 16742 1w0hA 204 3.89e+01 1qkrA 188 3.90e+01 1qkrA a.24.9.1 16628 1z6nA 167 3.92e+01 1nm8A 616 3.95e+01 c.43.1.3,c.43.1.3 85872,85873 2fckA 181 3.95e+01 1vqoB 338 3.97e+01 1kmiZ 214 3.97e+01 h.4.11.1 72752 1dgnA 89 4.16e+01 1dgnA a.77.1.3 18436 2db0A 253 4.24e+01 1sbxA 106 4.34e+01 a.6.1.4 105414 1h6kZ 98 4.41e+01 d.58.7.1 60686 1h05A 146 4.43e+01 c.23.13.1 76433 1ydiA 263 4.44e+01 2gmyA 153 4.46e+01 1uruA 244 4.47e+01 h.4.14.1 99835 1b5qA 472 4.54e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1dk0A 188 4.58e+01 1b2vA d.35.1.1 38530 2ah5A 210 4.62e+01 1yeyA 444 4.87e+01 1lj2A 110 4.93e+01 h.1.13.2 73926 1wiwA 290 4.97e+01 1ohuA 175 5.01e+01 f.1.4.1 93029 1pme 380 5.32e+01 1hcl d.144.1.7 41653 2ar0A 541 5.38e+01 1ynbA 173 5.54e+01 1q44A 326 5.62e+01 c.37.1.5 95779 1q8iA 783 5.66e+01 c.55.3.5,e.8.1.1 96208,96209 2blkA 122 5.69e+01 1mo9A 523 5.76e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1uc8A 280 5.98e+01 c.30.1.6,d.142.1.7 99165,99166 1eexA 554 6.07e+01 1dioA c.1.19.3 29650 1zk7A 467 6.14e+01 1sfkA 76 6.20e+01 a.190.1.1 105488 1sauA 115 6.29e+01 2fymA 431 6.29e+01 1jihA 531 6.32e+01 d.240.1.1,e.8.1.7 90374,90375 1vjvA 415 6.48e+01 d.3.1.9 108632 1gs5A 258 6.55e+01 c.73.1.2 70395 1ryiA 382 6.60e+01 1pq4A 291 6.61e+01 c.92.2.2 94995 2f94F 350 6.62e+01 1q2lA 939 6.66e+01 1srrA 124 6.66e+01 1dz3A c.23.1.1 31110 1qsaA 618 6.68e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1rkbA 173 6.80e+01 1vjlA 164 6.87e+01 d.257.1.1 100822 1yy7A 213 6.89e+01 1d2tA 231 6.90e+01 1d2tA a.111.1.1 19052 2ab0A 205 6.92e+01 1z8oA 404 6.98e+01 2c71A 216 7.02e+01 1wzuA 300 7.04e+01 1bsg 266 7.05e+01 1btl e.3.1.1 42729 1g2hA 61 7.07e+01 1g2hA a.4.1.12 60224 1k8kE 178 7.20e+01 a.148.1.1 68311 1ufiA 64 7.21e+01 a.30.4.1 99336 1u9lA 70 7.23e+01 a.60.4.2 107751 2fbwD 103 7.25e+01 1xq8A 140 7.27e+01 1k47A 337 7.28e+01 d.14.1.5,d.58.26.4 72040,72041 2cxaA 256 7.30e+01 2btzA 394 7.31e+01 1ybzA 91 7.38e+01 1zv1A 65 7.42e+01 1mijA 152 7.43e+01 a.4.1.1 79150 1wmiB 67 7.45e+01 1gnxA 479 7.49e+01 c.1.8.4 76241 1xreA 217 7.51e+01 2h88D 103 7.54e+01 1e85A 127 7.61e+01 1bbhA a.24.3.2 16549 1aky 221 7.66e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1qc7A 101 7.85e+01 1qc7A a.118.14.1 18456 1wlxA 129 7.92e+01 1s9uA 207 7.98e+01 a.184.1.1 105390 1ijyA 130 8.00e+01 1ijxA a.141.1.1 62517 1hyeA 313 8.00e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1xg2B 153 8.14e+01 1zk8A 183 8.14e+01 1mxmA 254 8.22e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1e9rA 437 8.25e+01 c.37.1.11 64827 1tueB 218 8.28e+01 b.91.1.1 107324 1z77A 200 8.37e+01 1mo0A 275 8.37e+01 c.1.1.1 79329 1gk9A 260 8.37e+01 d.153.1.2 65246 1eg5A 384 8.37e+01 1ecxA c.67.1.3 34429 1keaA 221 8.42e+01 a.96.1.2 68491 1jr2A 286 8.55e+01 c.113.1.1 67111 2fmpA 335 8.82e+01 1azo 232 8.90e+01 1azo c.52.1.14 33329 1qtqA 553 8.91e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1yviA 149 8.97e+01 1fuiA 591 8.99e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444