# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 4.00e-17 1ufbA 127 2.59e-16 a.24.16.3 99331 1o3uA 135 9.79e-16 a.24.16.3 86615 1y8aA 332 2.17e-01 1v3wA 173 1.94e+00 b.81.1.5 100291 1c1dA 355 1.98e+00 1bw9A c.2.1.7,c.58.1.1 30270,33918 1bif 469 2.15e+00 1bif c.37.1.7,c.60.1.4 31961,34003 1ihgA 370 2.51e+00 2cpl a.118.8.1,b.62.1.1 62380,62381 1adt 356 2.78e+00 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 2b8nA 429 4.49e+00 1z23A 163 4.65e+00 2avdA 219 5.49e+00 2bk9A 153 5.68e+00 1wwpA 119 6.11e+00 1kxoA 184 6.96e+00 b.60.1.1 84475 1ryiA 382 7.05e+00 2bmaA 470 7.08e+00 1umkA 275 7.79e+00 1lqtA 456 8.75e+00 c.3.1.1,c.4.1.1 74198,74199 1yleA 342 8.98e+00 1snyA 267 9.09e+00 c.2.1.2 105833 1tt0A 623 9.78e+00 1yovA 537 9.93e+00 1wehA 171 1.02e+01 1tig 94 1.02e+01 1tig d.68.1.1 39566 1sauA 115 1.10e+01 1tzlA 622 1.13e+01 2bl8A 103 1.21e+01 2f6hX 419 1.23e+01 2cxaA 256 1.26e+01 1n71A 180 1.28e+01 d.108.1.1 85370 1sur 215 1.30e+01 1sur c.26.2.2 31620 3sdhA 146 1.32e+01 3sdhA a.1.1.2 14984 1o59A 355 1.35e+01 b.18.1.22,b.18.1.22 92495,92496 1jd0A 263 1.36e+01 2cba b.74.1.1 62888 2pth 193 1.39e+01 2pth c.56.3.1 33793 1s3aA 102 1.47e+01 1txdA 385 1.48e+01 a.87.1.1,b.55.1.1 107422,107423 1fit 147 1.57e+01 1fit d.13.1.1 37499 2f5vA 595 1.57e+01 1wr2A 238 1.61e+01 2au3A 407 1.62e+01 1mldA 314 1.68e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 2b5gA 171 1.80e+01 1i60A 278 1.81e+01 c.1.15.4 71118 1y2mA 716 1.90e+01 2cw8A 537 2.04e+01 1tz9A 367 2.07e+01 c.1.15.6 107466 1yviA 149 2.08e+01 1e6iA 121 2.09e+01 1b91A a.29.2.1 16969 1uxoA 192 2.14e+01 c.69.1.31 108121 1nowA 507 2.15e+01 c.1.8.6,d.92.2.1 85936,85937 2g64A 140 2.46e+01 1oapA 109 2.50e+01 d.79.7.1 92706 2a11A 242 2.52e+01 1np6A 174 2.56e+01 c.37.1.10 85954 1wzuA 300 2.62e+01 1rxdA 159 2.67e+01 1kutA 230 2.72e+01 d.143.1.1 73017 1xi1A 575 2.76e+01 2h00A 254 2.80e+01 2b0tA 738 2.83e+01 1x9mA 698 2.85e+01 1y0zA 330 2.86e+01 1faoA 126 2.89e+01 1faoA b.55.1.1 26974 1iejA 332 3.00e+01 1nnt c.94.1.2 62328 1o0sA 605 3.04e+01 c.2.1.7,c.58.1.3 86540,86541 1x9pA 523 3.05e+01 1qwgA 251 3.13e+01 c.1.27.1 96473 2f91A 237 3.41e+01 1y0kA 209 3.42e+01 2c1iA 431 3.48e+01 2furA 209 3.56e+01 1hkhA 279 3.59e+01 c.69.1.12 90628 1qlpA 394 3.59e+01 1ovaA e.1.1.1 42628 1chmA 401 3.68e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1xqoA 256 3.68e+01 1n9bA 265 3.80e+01 e.3.1.1 85463 1h2eA 207 3.87e+01 c.60.1.1 70857 1pi1A 185 3.92e+01 a.29.7.1 94699 2bcqA 335 4.08e+01 1bsg 266 4.10e+01 1btl e.3.1.1 42729 1qcsA 211 4.15e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1q2lA 939 4.29e+01 1gy8A 397 4.30e+01 c.2.1.2 83376 1fm4A 159 4.37e+01 1bv1 d.129.3.1 76186 1tm9A 137 4.57e+01 a.225.1.1 107150 1khyA 148 4.62e+01 a.174.1.1 77410 2d1pA 140 4.69e+01 1mdoA 393 4.84e+01 c.67.1.4 79013 1qx4A 274 4.91e+01 b.43.4.2,c.25.1.1 104624,104625 2ex0A 399 4.95e+01 1x1iA 752 5.02e+01 1vqoD 177 5.09e+01 1wzcA 249 5.11e+01 1a6m 151 5.17e+01 1a6m a.1.1.2 15018 1dk0A 188 5.20e+01 1b2vA d.35.1.1 38530 1im5A 180 5.24e+01 c.33.1.3 66211 1ps1A 337 5.26e+01 1ps1A a.128.1.4 19450 1aun 208 5.32e+01 1thv b.25.1.1 23900 2fiqA 420 5.41e+01 1pmnA 364 5.43e+01 d.144.1.7 94907 1pujA 282 5.59e+01 c.37.1.8 88294 1t6cA 315 5.67e+01 c.55.1.8,c.55.1.8 106558,106559 1w7jA 795 5.74e+01 2brqA 97 5.77e+01 2ch8A 201 5.83e+01 1sflA 238 5.84e+01 1sbxA 106 5.85e+01 a.6.1.4 105414 1e7wA 291 5.86e+01 c.2.1.2 59373 1u4bA 580 5.87e+01 c.55.3.5,e.8.1.1 107664,107665 1ylmA 144 5.90e+01 2bmfA 451 6.01e+01 1f8rA 498 6.15e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1h05A 146 6.23e+01 c.23.13.1 76433 1clc 639 6.30e+01 1clc a.102.1.2,b.1.18.2 18835,21872 2frfA 153 6.38e+01 1lam 484 6.41e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1z8sA 146 6.44e+01 3pcgM 238 6.45e+01 3pchM b.3.6.1 22742 2anxA 146 6.46e+01 1fxlA 167 6.52e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2dc3A 193 6.56e+01 1hyeA 313 6.57e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1keaA 221 6.62e+01 a.96.1.2 68491 1te2A 226 6.67e+01 c.108.1.6 106792 1khoA 370 6.67e+01 a.124.1.1,b.12.1.3 72489,72490 2btvA 901 6.71e+01 2btvA e.28.1.1 43376 1t33A 224 6.73e+01 a.4.1.9,a.121.1.1 106295,106296 1ml4A 308 6.79e+01 c.78.1.1,c.78.1.1 79255,79256 1vliA 385 6.81e+01 b.85.1.1,c.1.10.6 108830,108831 1gpuA 680 6.95e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1ydwA 362 7.00e+01 1ci4A 89 7.05e+01 1qckA a.60.5.1 17970 1hf8A 289 7.08e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1sx7A 164 7.13e+01 2ah5A 210 7.19e+01 1pinA 163 7.19e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1um0A 365 7.27e+01 d.258.1.1 107942 1xhnA 184 7.32e+01 1yy7A 213 7.45e+01 1v4pA 157 7.57e+01 1rh5A 436 7.59e+01 f.41.1.1 97464 1e29A 135 7.59e+01 1e29A a.3.1.1 59161 1xreA 217 7.79e+01 2cfuA 658 7.84e+01 1brt 277 7.93e+01 1brt c.69.1.12 34699 1gjnA 153 7.93e+01 a.1.1.2 70191 1pxvA 183 8.00e+01 d.3.1.1 95301 1v4xB 146 8.02e+01 a.1.1.2 108364 1z8oA 404 8.04e+01 1rttA 193 8.28e+01 c.23.5.4 105098 1yljA 263 8.37e+01 1f6fA 199 8.44e+01 1f6fA a.26.1.1 16839 1ywwA 85 8.53e+01 1a76 326 8.64e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1s3eA 520 8.79e+01 c.3.1.2,d.16.1.5 98426,98427 1u60A 310 8.81e+01 e.3.1.2 107692 1vmfA 145 8.84e+01 1c0pA 363 8.89e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1czyA 168 8.95e+01 1d0aB b.8.1.1,h.1.2.1 23220,45427 1zgyA 272 8.98e+01