# TARGET T0367 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0367.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 60 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.040 0.043 0.913 2 D 0.002 0.003 0.002 0.711 0.036 0.245 3 E 0.001 0.001 0.002 0.979 0.006 0.011 4 L 0.001 0.001 0.002 0.992 0.003 0.002 5 E 0.001 0.001 0.002 0.994 0.002 0.001 6 L 0.001 0.001 0.003 0.994 0.002 0.001 7 R 0.001 0.001 0.001 0.998 0.001 0.001 8 I 0.001 0.001 0.001 0.998 0.001 0.001 9 R 0.001 0.001 0.001 0.998 0.001 0.001 10 K 0.001 0.001 0.001 0.997 0.001 0.001 11 A 0.001 0.001 0.002 0.994 0.002 0.002 12 E 0.001 0.001 0.007 0.984 0.006 0.003 13 K 0.001 0.001 0.007 0.979 0.007 0.007 14 L 0.001 0.001 0.004 0.959 0.007 0.029 15 V 0.001 0.001 0.005 0.968 0.008 0.018 16 Q 0.001 0.001 0.008 0.976 0.008 0.007 17 D 0.001 0.001 0.009 0.961 0.013 0.015 18 A 0.001 0.001 0.006 0.977 0.007 0.009 19 K 0.001 0.001 0.008 0.970 0.009 0.012 20 K 0.001 0.001 0.017 0.946 0.018 0.017 21 E 0.001 0.001 0.017 0.920 0.037 0.024 22 F 0.001 0.001 0.018 0.932 0.035 0.014 23 E 0.001 0.001 0.012 0.909 0.051 0.026 24 M 0.001 0.001 0.011 0.837 0.074 0.076 25 G 0.005 0.003 0.008 0.353 0.187 0.444 26 L 0.025 0.012 0.012 0.461 0.096 0.396 27 Y 0.018 0.002 0.008 0.923 0.020 0.030 28 E 0.007 0.001 0.006 0.973 0.007 0.007 29 R 0.002 0.001 0.004 0.990 0.002 0.002 30 C 0.001 0.001 0.004 0.988 0.002 0.004 31 C 0.001 0.001 0.002 0.994 0.001 0.002 32 S 0.001 0.001 0.002 0.994 0.001 0.003 33 T 0.001 0.001 0.002 0.995 0.001 0.002 34 A 0.001 0.001 0.001 0.998 0.001 0.001 35 Y 0.001 0.001 0.001 0.998 0.001 0.001 36 Y 0.001 0.001 0.001 0.999 0.001 0.001 37 A 0.001 0.001 0.001 0.998 0.001 0.001 38 M 0.001 0.001 0.001 0.998 0.001 0.001 39 F 0.001 0.001 0.001 0.998 0.001 0.001 40 H 0.001 0.001 0.002 0.997 0.001 0.001 41 A 0.001 0.001 0.001 0.997 0.001 0.001 42 A 0.001 0.001 0.002 0.996 0.001 0.002 43 K 0.001 0.001 0.003 0.991 0.003 0.003 44 A 0.001 0.001 0.007 0.984 0.006 0.002 45 M 0.001 0.001 0.007 0.985 0.005 0.002 46 L 0.001 0.001 0.011 0.977 0.008 0.002 47 L 0.001 0.001 0.014 0.961 0.013 0.011 48 G 0.002 0.002 0.031 0.703 0.073 0.189 49 Y 0.003 0.007 0.055 0.403 0.189 0.344 50 G 0.004 0.004 0.009 0.011 0.220 0.753 51 R 0.013 0.024 0.008 0.010 0.237 0.708 52 D 0.024 0.047 0.009 0.009 0.390 0.522 53 S 0.013 0.019 0.071 0.039 0.543 0.313 54 K 0.023 0.017 0.126 0.065 0.471 0.298 55 T 0.032 0.022 0.106 0.128 0.374 0.338 56 H 0.026 0.014 0.040 0.378 0.226 0.315 57 R 0.013 0.005 0.011 0.760 0.102 0.109 58 G 0.006 0.002 0.008 0.923 0.039 0.022 59 T 0.011 0.003 0.005 0.954 0.017 0.011 60 I 0.015 0.001 0.009 0.956 0.011 0.008 61 Y 0.015 0.001 0.015 0.940 0.018 0.011 62 L 0.016 0.002 0.026 0.904 0.029 0.023 63 I 0.020 0.004 0.027 0.858 0.046 0.046 64 W 0.017 0.002 0.030 0.821 0.056 0.075 65 E 0.010 0.001 0.026 0.865 0.050 0.048 66 C 0.016 0.004 0.022 0.815 0.073 0.070 67 R 0.027 0.004 0.028 0.647 0.117 0.177 68 E 0.024 0.005 0.038 0.740 0.071 0.121 69 E 0.026 0.006 0.041 0.717 0.110 0.100 70 L 0.016 0.004 0.039 0.615 0.148 0.178 71 G 0.011 0.006 0.013 0.092 0.210 0.668 72 L 0.032 0.032 0.011 0.086 0.179 0.660 73 S 0.025 0.023 0.008 0.060 0.140 0.745 74 D 0.008 0.008 0.091 0.227 0.330 0.337 75 D 0.003 0.002 0.254 0.454 0.202 0.084 76 D 0.005 0.003 0.261 0.532 0.148 0.051 77 C 0.009 0.005 0.145 0.612 0.153 0.077 78 S 0.011 0.005 0.077 0.635 0.146 0.126 79 K 0.018 0.010 0.098 0.663 0.122 0.089 80 L 0.025 0.011 0.090 0.633 0.147 0.094 81 S 0.019 0.003 0.129 0.533 0.180 0.137 82 R 0.018 0.004 0.120 0.524 0.160 0.174 83 A 0.032 0.015 0.073 0.505 0.169 0.206 84 F 0.031 0.006 0.071 0.318 0.249 0.324 85 D 0.038 0.009 0.056 0.163 0.275 0.458 86 L 0.090 0.028 0.055 0.181 0.258 0.389 87 R 0.088 0.045 0.038 0.124 0.231 0.474 88 E 0.045 0.029 0.045 0.085 0.325 0.471 89 E 0.009 0.006 0.373 0.119 0.342 0.150 90 S 0.012 0.007 0.424 0.110 0.322 0.125 91 D 0.010 0.011 0.393 0.098 0.379 0.110 92 Y 0.010 0.019 0.130 0.144 0.400 0.297 93 G 0.015 0.021 0.038 0.053 0.438 0.436 94 I 0.021 0.020 0.031 0.089 0.461 0.378 95 Y 0.041 0.032 0.037 0.044 0.427 0.418 96 K 0.037 0.022 0.033 0.029 0.427 0.452 97 E 0.026 0.017 0.036 0.020 0.343 0.558 98 V 0.019 0.033 0.009 0.023 0.208 0.708 99 S 0.013 0.014 0.002 0.024 0.063 0.885 100 K 0.001 0.001 0.010 0.982 0.004 0.004 101 D 0.001 0.001 0.008 0.990 0.002 0.001 102 L 0.001 0.001 0.005 0.994 0.001 0.001 103 A 0.001 0.001 0.001 0.996 0.001 0.001 104 I 0.001 0.001 0.001 0.997 0.001 0.001 105 K 0.001 0.001 0.002 0.994 0.002 0.001 106 I 0.001 0.001 0.002 0.994 0.002 0.002 107 L 0.001 0.001 0.002 0.992 0.003 0.003 108 K 0.001 0.001 0.003 0.993 0.002 0.001 109 D 0.001 0.001 0.003 0.987 0.003 0.007 110 A 0.001 0.001 0.001 0.999 0.001 0.001 111 E 0.001 0.001 0.001 0.999 0.001 0.001 112 I 0.001 0.001 0.001 0.999 0.001 0.001 113 F 0.001 0.001 0.001 0.999 0.001 0.001 114 V 0.001 0.001 0.001 0.999 0.001 0.001 115 Q 0.001 0.001 0.001 0.999 0.001 0.001 116 K 0.001 0.001 0.001 0.998 0.001 0.001 117 A 0.001 0.001 0.001 0.998 0.001 0.001 118 K 0.001 0.001 0.002 0.996 0.001 0.001 119 N 0.001 0.001 0.002 0.995 0.001 0.001 120 A 0.001 0.001 0.002 0.990 0.003 0.005 121 V 0.001 0.001 0.005 0.979 0.007 0.008 122 N 0.001 0.001 0.007 0.945 0.021 0.025 123 K 0.001 0.001 0.007 0.750 0.045 0.196 124 N 0.001 0.002 0.002 0.054 0.056 0.887 125 R 0.002 0.001 0.001 0.009 0.047 0.940