# TARGET T0367 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0367.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 60 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.002 0.001 0.001 0.996 2 D 0.015 0.008 0.003 0.584 0.008 0.011 0.371 3 E 0.006 0.003 0.003 0.939 0.013 0.010 0.026 4 L 0.002 0.001 0.002 0.973 0.002 0.006 0.015 5 E 0.002 0.001 0.001 0.982 0.003 0.002 0.009 6 L 0.004 0.001 0.003 0.971 0.006 0.003 0.012 7 R 0.002 0.001 0.003 0.977 0.003 0.007 0.008 8 I 0.001 0.001 0.001 0.994 0.001 0.003 0.002 9 R 0.001 0.001 0.001 0.995 0.001 0.003 0.001 10 K 0.001 0.001 0.001 0.993 0.001 0.006 0.001 11 A 0.001 0.001 0.001 0.991 0.001 0.007 0.001 12 E 0.001 0.001 0.001 0.993 0.001 0.005 0.001 13 K 0.001 0.001 0.001 0.982 0.001 0.015 0.001 14 L 0.001 0.001 0.002 0.967 0.001 0.026 0.005 15 V 0.001 0.001 0.002 0.984 0.002 0.008 0.005 16 Q 0.001 0.001 0.002 0.986 0.001 0.010 0.001 17 D 0.001 0.001 0.003 0.974 0.001 0.021 0.001 18 A 0.001 0.001 0.003 0.968 0.001 0.025 0.004 19 K 0.001 0.001 0.002 0.979 0.001 0.014 0.003 20 K 0.001 0.001 0.004 0.957 0.002 0.033 0.004 21 E 0.001 0.001 0.005 0.956 0.003 0.030 0.006 22 F 0.001 0.001 0.009 0.927 0.015 0.031 0.017 23 E 0.001 0.001 0.011 0.876 0.012 0.079 0.020 24 M 0.001 0.001 0.008 0.668 0.013 0.305 0.006 25 G 0.001 0.001 0.006 0.491 0.066 0.378 0.058 26 L 0.002 0.008 0.010 0.644 0.077 0.068 0.191 27 Y 0.001 0.003 0.008 0.911 0.016 0.014 0.047 28 E 0.001 0.001 0.009 0.963 0.007 0.011 0.009 29 R 0.001 0.001 0.008 0.973 0.004 0.009 0.005 30 C 0.001 0.001 0.008 0.970 0.003 0.012 0.006 31 C 0.001 0.001 0.004 0.973 0.003 0.014 0.005 32 S 0.001 0.001 0.002 0.972 0.005 0.018 0.004 33 T 0.001 0.001 0.001 0.980 0.002 0.014 0.002 34 A 0.001 0.001 0.001 0.991 0.001 0.006 0.002 35 Y 0.001 0.001 0.001 0.996 0.001 0.002 0.001 36 Y 0.001 0.001 0.001 0.996 0.001 0.002 0.001 37 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 38 M 0.001 0.001 0.001 0.996 0.001 0.003 0.001 39 F 0.001 0.001 0.001 0.996 0.001 0.003 0.001 40 H 0.001 0.001 0.001 0.994 0.001 0.005 0.001 41 A 0.001 0.001 0.001 0.991 0.001 0.008 0.001 42 A 0.001 0.001 0.001 0.994 0.001 0.004 0.001 43 K 0.001 0.001 0.001 0.995 0.001 0.003 0.001 44 A 0.001 0.001 0.001 0.996 0.001 0.003 0.001 45 M 0.001 0.001 0.001 0.997 0.001 0.003 0.001 46 L 0.001 0.001 0.001 0.995 0.001 0.004 0.001 47 L 0.001 0.001 0.001 0.985 0.001 0.013 0.001 48 G 0.001 0.001 0.003 0.906 0.003 0.084 0.004 49 Y 0.001 0.001 0.006 0.333 0.014 0.634 0.012 50 G 0.002 0.002 0.005 0.021 0.085 0.767 0.119 51 R 0.010 0.015 0.008 0.006 0.223 0.031 0.707 52 D 0.031 0.026 0.016 0.008 0.136 0.028 0.755 53 S 0.019 0.010 0.193 0.083 0.129 0.355 0.210 54 K 0.019 0.009 0.212 0.130 0.089 0.374 0.168 55 T 0.027 0.021 0.159 0.187 0.133 0.235 0.239 56 H 0.024 0.012 0.024 0.227 0.185 0.054 0.474 57 R 0.008 0.003 0.023 0.726 0.047 0.149 0.044 58 G 0.013 0.005 0.013 0.841 0.024 0.081 0.023 59 T 0.008 0.002 0.006 0.960 0.003 0.008 0.014 60 I 0.007 0.001 0.004 0.972 0.003 0.004 0.008 61 Y 0.005 0.001 0.005 0.980 0.002 0.006 0.003 62 L 0.005 0.001 0.011 0.964 0.001 0.016 0.003 63 I 0.006 0.001 0.010 0.961 0.002 0.015 0.006 64 W 0.006 0.001 0.013 0.943 0.003 0.029 0.005 65 E 0.006 0.001 0.014 0.911 0.005 0.055 0.009 66 C 0.008 0.002 0.011 0.886 0.006 0.065 0.022 67 R 0.013 0.005 0.022 0.844 0.022 0.048 0.047 68 E 0.010 0.002 0.061 0.803 0.022 0.074 0.028 69 E 0.006 0.001 0.051 0.750 0.017 0.155 0.020 70 L 0.006 0.005 0.047 0.417 0.030 0.453 0.041 71 G 0.007 0.006 0.022 0.073 0.082 0.647 0.163 72 L 0.016 0.013 0.035 0.045 0.137 0.128 0.626 73 S 0.034 0.030 0.032 0.055 0.127 0.078 0.644 74 D 0.011 0.007 0.165 0.158 0.124 0.213 0.322 75 D 0.005 0.003 0.300 0.152 0.061 0.350 0.129 76 D 0.007 0.005 0.370 0.266 0.042 0.233 0.077 77 C 0.016 0.012 0.287 0.329 0.082 0.113 0.162 78 S 0.012 0.005 0.198 0.394 0.047 0.223 0.121 79 K 0.015 0.007 0.207 0.496 0.042 0.182 0.052 80 L 0.047 0.014 0.085 0.446 0.131 0.052 0.226 81 S 0.026 0.003 0.221 0.490 0.024 0.108 0.128 82 R 0.035 0.005 0.195 0.481 0.038 0.187 0.059 83 A 0.037 0.011 0.212 0.418 0.035 0.193 0.094 84 F 0.069 0.015 0.095 0.352 0.125 0.092 0.253 85 D 0.063 0.008 0.072 0.307 0.073 0.157 0.319 86 L 0.038 0.012 0.055 0.327 0.089 0.211 0.268 87 R 0.033 0.028 0.035 0.267 0.114 0.151 0.371 88 E 0.038 0.019 0.034 0.179 0.159 0.101 0.469 89 E 0.022 0.007 0.105 0.217 0.107 0.161 0.380 90 S 0.018 0.010 0.119 0.174 0.146 0.213 0.321 91 D 0.021 0.017 0.119 0.167 0.139 0.260 0.277 92 Y 0.027 0.019 0.109 0.159 0.184 0.256 0.245 93 G 0.033 0.011 0.079 0.093 0.158 0.314 0.312 94 I 0.053 0.030 0.077 0.067 0.190 0.210 0.372 95 Y 0.066 0.028 0.048 0.036 0.189 0.086 0.548 96 K 0.104 0.020 0.028 0.028 0.136 0.075 0.610 97 E 0.053 0.019 0.007 0.010 0.038 0.022 0.852 98 V 0.053 0.060 0.002 0.010 0.074 0.008 0.792 99 S 0.009 0.013 0.001 0.013 0.039 0.003 0.921 100 K 0.001 0.001 0.005 0.987 0.001 0.006 0.001 101 D 0.001 0.001 0.004 0.991 0.001 0.004 0.001 102 L 0.001 0.001 0.005 0.992 0.001 0.002 0.001 103 A 0.001 0.001 0.001 0.999 0.001 0.001 0.001 104 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 105 K 0.001 0.001 0.001 0.995 0.001 0.004 0.001 106 I 0.001 0.001 0.001 0.994 0.001 0.005 0.001 107 L 0.001 0.001 0.001 0.996 0.001 0.002 0.001 108 K 0.001 0.001 0.001 0.992 0.001 0.007 0.001 109 D 0.001 0.001 0.001 0.985 0.001 0.013 0.001 110 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 111 E 0.001 0.001 0.001 0.998 0.001 0.001 0.001 112 I 0.001 0.001 0.001 0.998 0.001 0.002 0.001 113 F 0.001 0.001 0.001 0.998 0.001 0.002 0.001 114 V 0.001 0.001 0.001 0.999 0.001 0.001 0.001 115 Q 0.001 0.001 0.001 0.998 0.001 0.001 0.001 116 K 0.001 0.001 0.001 0.997 0.001 0.003 0.001 117 A 0.001 0.001 0.001 0.996 0.001 0.003 0.001 118 K 0.001 0.001 0.001 0.996 0.001 0.003 0.001 119 N 0.001 0.001 0.001 0.980 0.001 0.019 0.001 120 A 0.001 0.001 0.002 0.944 0.001 0.047 0.006 121 V 0.001 0.002 0.007 0.881 0.015 0.065 0.031 122 N 0.003 0.003 0.024 0.618 0.061 0.189 0.102 123 K 0.003 0.002 0.022 0.415 0.116 0.307 0.135 124 N 0.004 0.003 0.013 0.115 0.053 0.142 0.671 125 R 0.001 0.001 0.001 0.003 0.008 0.002 0.984