# List of top-scoring protein chains for T0366.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 3.53e-14 1rgrA 99 3.84e-13 b.36.1.1 104931 1d5gA 96 4.10e-13 b.36.1.1 70080 1vj6A 102 4.23e-13 1kefA 93 5.28e-13 b.36.1.1 72369 1zokA 93 6.50e-13 1gm1A 94 6.79e-13 b.36.1.1 70271 1iu0A 91 7.61e-13 b.36.1.1 83707 1um7A 113 7.78e-13 b.36.1.1 99579 1wfvA 103 1.38e-12 2fcfA 103 1.39e-12 2bygA 117 1.71e-12 1tp5A 119 1.72e-12 1be9A 119 2.19e-12 1pdr b.36.1.1 24774 1wf8A 107 2.94e-12 1x5qA 110 3.00e-12 2dazA 124 3.39e-12 1q7xA 108 4.31e-12 b.36.1.1 96059 2fe5A 94 5.37e-12 1pdr 99 5.64e-12 1pdr b.36.1.1 24771 1whaA 105 6.48e-12 1z87A 263 7.61e-12 1uewA 114 8.20e-12 b.36.1.1 99281 2csjA 117 1.08e-11 1i92A 91 1.15e-11 1pdr b.36.1.1 61990 1g9oA 91 1.16e-11 1pdr b.36.1.1 60400 1ujuA 111 1.19e-11 b.36.1.1 99469 1gq5A 91 1.19e-11 b.36.1.1 76274 1uf1A 128 1.30e-11 b.36.1.1 99288 1oziA 99 1.30e-11 b.36.1.1 93845 1gq4A 90 1.32e-11 b.36.1.1 70340 1um1A 110 1.39e-11 b.36.1.1 99578 1qavA 90 1.57e-11 1qauA b.36.1.1 24777 1uezA 101 1.74e-11 b.36.1.1 99286 1z86A 87 2.26e-11 2pdzA 86 2.46e-11 1pdr b.36.1.1 24778 1uhpA 107 2.58e-11 b.36.1.1 99400 1xz9A 101 3.08e-11 1t2mA 101 3.55e-11 1qlcA 95 3.66e-11 1qauA b.36.1.1 24776 2db5A 128 4.19e-11 1ueqA 123 5.38e-11 b.36.1.1 99271 1ihjA 98 6.39e-11 1pdr b.36.1.1 62382 1q3oA 109 9.91e-11 b.36.1.1 95700 1wi2A 104 1.04e-10 2h2cA 107 1.18e-10 2h2bA 107 1.18e-10 2h3mA 97 1.57e-10 2f0aA 98 1.58e-10 1l6oA 95 1.69e-10 b.36.1.1 84534 2d92A 108 1.71e-10 1wg6A 127 1.72e-10 1x5rA 112 2.06e-10 1v62A 117 2.08e-10 b.36.1.1 108390 1n7eA 97 2.17e-10 b.36.1.1 91691 1b8qA 127 2.63e-10 1qauA b.36.1.1 24781 1uepA 103 3.22e-10 b.36.1.1 99270 1mc7A 95 3.66e-10 b.36.1.1 91241 1x6dA 119 3.74e-10 1qavB 115 4.09e-10 1qauA b.36.1.1 24780 1i16 130 4.10e-10 1i16 b.36.1.2 24787 1w9eA 166 4.93e-10 1ry4A 128 4.95e-10 b.36.1.1 98085 1v5lA 103 5.30e-10 b.36.1.1 108378 1qauA 112 5.75e-10 1qauA b.36.1.1 24779 2cssA 121 5.93e-10 1kwaA 88 6.23e-10 1kwaA b.36.1.1 24772 1wh1A 124 6.56e-10 1uitA 117 6.60e-10 b.36.1.1 99433 1p1dA 196 8.02e-10 b.36.1.1,b.36.1.1 93896,93897 1x8sA 102 8.17e-10 2h3lA 103 8.77e-10 1v5qA 122 9.27e-10 b.36.1.1 108383 1vb7A 94 9.57e-10 b.36.1.1 108474 1rzxA 98 1.09e-09 b.36.1.1 98236 1wf7A 103 1.12e-09 1mfgA 95 1.13e-09 b.36.1.1 79043 1nf3C 128 1.28e-09 b.36.1.1 85596 1p1eA 101 1.46e-09 b.36.1.1 93898 2cs5A 119 1.64e-09 1x5nA 114 1.66e-09 1rgwA 85 1.79e-09 b.36.1.1 97455 1wjlA 90 1.86e-09 1zubA 114 1.88e-09 1wfgA 131 1.96e-09 1va8A 113 1.99e-09 2f5yA 91 3.65e-09 1wi4A 109 3.79e-09 1whdA 100 4.01e-09 1u3bA 185 4.43e-09 1ujdA 117 5.19e-09 b.36.1.1 99454 1m5zA 91 5.20e-09 b.36.1.1 78676 1x45A 98 1.35e-08 1u37A 89 1.38e-08 1v6bA 118 3.83e-08 b.36.1.1 108394 1ujvA 96 5.69e-08 b.36.1.1 99470 1y7nA 90 1.62e-07 1r6jA 82 2.08e-07 b.36.1.1 97151 1u39A 80 3.71e-07 1ufxA 103 3.89e-07 b.36.1.1 99359 1obxA 79 4.06e-07 b.36.1.1 86783 1vaeA 111 5.32e-07 b.36.1.1 108466 1wifA 126 6.16e-07 1fc6A 388 2.69e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 3.74e-05 1fc6A b.36.1.3,c.14.1.2 64742,64743 2d8iA 114 4.19e-05 1ky9A 448 6.65e-04 b.36.1.4,b.47.1.1 73198,73199 1lcyA 325 7.26e-04 b.36.1.4,b.47.1.1 73834,73835 1sotA 320 2.66e-03 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 2.68e-03 b.36.1.4,b.47.1.1 105859,105860 1te0A 318 2.71e-03 1y8tA 324 4.80e-01 2bh4X 134 2.26e+00 2bgvX 134 2.41e+00 2a6tA 271 2.45e+00 1ao0A 459 3.66e+00 1ecfB c.61.1.1,d.153.1.1 34049,41816 1gph1 465 3.68e+00 1ecfB 1zn8A 180 4.52e+00 1x6vA 630 4.71e+00 1eaxA 241 4.74e+00 b.47.1.2 64889 1db3A 372 5.67e+00 1db3A c.2.1.2 29813 1mzvA 235 5.98e+00 c.61.1.1 91502 2bngA 149 6.94e+00 1cot 129 7.58e+00 1ycc a.3.1.1 15899 1m54A 363 7.84e+00 c.79.1.1 74463 1qb7A 236 7.93e+00 1qb7A c.61.1.1 34087 1mkmA 249 7.94e+00 a.4.5.33,d.110.2.2 79242,79243 155c 135 8.23e+00 1ycc a.3.1.1 15900 1jbqA 435 9.15e+00 1oasA c.79.1.1 62850 1wmaA 276 1.12e+01 1n5dA 288 1.63e+01 c.2.1.2 80030 1hvyA 288 1.73e+01 1bkpA d.117.1.1 41049 1hzwA 290 1.73e+01 1bkpA d.117.1.1 61464 1jalA 363 1.74e+01 c.37.1.8,d.15.10.2 84138,84139 1ypvA 313 1.78e+01 1ju6A 313 1.81e+01 d.117.1.1 63289 1rfmA 344 1.84e+01 c.122.1.1 97385 1dms 781 1.86e+01 1dmr b.52.2.2,c.81.1.1 26906,35314 1hw4A 355 1.93e+01 1bkpA d.117.1.1 41054 1yb2A 275 2.04e+01 1fm0E 150 2.09e+01 1fmaE d.41.5.1 38629 1nvjA 140 2.10e+01 d.41.5.1 86243 1lnzA 342 2.22e+01 b.117.1.1,c.37.1.8 78112,78113 1kk1A 410 2.49e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1tis 286 2.53e+01 1bkpA d.117.1.1 41040 1e6vC 258 2.53e+01 1mroC d.58.31.1 39439 1vorL 132 3.44e+01 1e61A 823 3.52e+01 1dmr b.52.2.2,c.81.1.1 26908,35316 1dmr 823 3.52e+01 1dmr b.52.2.2,c.81.1.1 26904,35312 4dmr 823 3.53e+01 1dmr b.52.2.2,c.81.1.1 26905,35313 1e18A 823 3.54e+01 1dmr b.52.2.2,c.81.1.1 26907,35315 1vl8A 267 3.60e+01 c.2.1.2 108733 1wkvA 389 3.61e+01 2tsrA 307 3.73e+01 1bkpA d.117.1.1 41043 1nkwI 134 3.76e+01 i.1.1.2 80594 1vpqA 273 3.87e+01 1vjjA 692 3.94e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1rleA 692 3.95e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 97638,97639,97640,97641 2bhtA 303 4.07e+01 2hc1A 291 4.15e+01 1zm8A 259 4.19e+01 1vixA 420 4.20e+01 c.56.5.4,d.58.19.1 100777,100778 1kk3A 410 4.37e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1a6f 119 4.49e+01 1a6f d.14.1.2 37564 1zz1A 369 4.57e+01 1sw2A 275 4.62e+01 c.94.1.1 106064 1sw5A 275 4.62e+01 c.94.1.1 106069 2ahsA 295 4.64e+01 1rtwA 220 4.65e+01 a.132.1.3 97823 1mhsA 920 4.76e+01 i.18.1.1 79130 2h04A 313 5.04e+01 1f28A 297 5.11e+01 1bkpA d.117.1.1 59608 2d4pA 141 5.23e+01 1a97A 148 5.28e+01 1nulA c.61.1.1 34023 1a98A 152 5.39e+01 1nulA c.61.1.1 34021 1bvwA 360 5.41e+01 1bvwA c.6.1.1 30668 1gz1A 362 5.44e+01 c.6.1.1 76405 1ocjA 362 5.44e+01 c.6.1.1 86801 2bvwA 362 5.44e+01 1bvwA c.6.1.1 30666 1oc7A 364 5.45e+01 c.6.1.1 86794 1djpA 330 5.52e+01 4pgaA c.88.1.1 35567 3pga1 337 5.57e+01 4pgaA 1nulA 152 5.68e+01 1nulA c.61.1.1 34011 4pgaA 337 5.78e+01 4pgaA c.88.1.1 35565 2ew2A 316 5.93e+01 2ag0A 563 6.07e+01 1px5A 349 6.09e+01 a.160.1.2,d.218.1.6 95277,95278 1yg9A 330 6.17e+01 1bx4A 345 6.31e+01 1bx4A c.72.1.1 34935 1rlyA 60 6.36e+01 g.41.3.1 104988 1dl6A 58 6.47e+01 1dl6A g.41.3.1 45207 1gr0A 367 6.71e+01 c.2.1.3,d.81.1.3 70379,70380 2d7uA 339 6.88e+01 1kjyB 36 7.00e+01 2ftcB 136 7.08e+01 1ot2A 686 7.38e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87396,87397,87398,87399 1ot1A 686 7.50e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1nylA 539 7.57e+01 b.53.1.2,c.26.1.1 80741,80742 1eo5A 686 7.62e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21828,22497,27735,28722 1n2tA 386 7.74e+01 c.67.1.3 79858 1d3cA 686 7.77e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1qrsA 553 7.77e+01 1gtrA b.53.1.2,c.26.1.1 26941,31580 1qrtA 553 7.77e+01 1gtrA b.53.1.2,c.26.1.1 26943,31582 1pezA 686 7.81e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94600,94601,94602,94603 1cgw 686 7.84e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21822,22491,27729,28716 1cdg 686 7.91e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21816,22485,27723,28710 1t3qB 788 7.91e+01 d.41.1.1,d.133.1.1 106369,106370 1cgy 686 7.91e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21823,22492,27730,28717 1cgv 686 7.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21820,22489,27727,28714 1kckA 686 7.93e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68441,68442,68443,68444 1pj9A 686 7.93e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94754,94755,94756,94757 1cxlA 686 7.95e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1tcmA 686 7.97e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21833,22502,27740,28727 1cgx 686 7.99e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21832,22501,27739,28726 1qtqA 553 7.99e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1kclA 686 8.02e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68445,68446,68447,68448 1euyA 548 8.06e+01 1gtrA b.53.1.2,c.26.1.1 26945,31584 1o0cA 554 8.06e+01 b.53.1.2,c.26.1.1 86529,86530 1r13A 148 8.11e+01 d.169.1.1,h.1.1.1 96782,96783 1dtuA 686 8.13e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21840,22509,27747,28734 1wxxA 382 8.13e+01 1xxgA 233 8.15e+01 1rlw 126 8.36e+01 1rlw b.7.1.1 23177 1q6zA 528 8.43e+01 1pi3A 528 8.53e+01 1ynoA 527 8.59e+01 1bfd 528 8.61e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1bci 138 8.68e+01 1rlw b.7.1.1 23180 1qveA 126 8.74e+01 d.24.1.1 104594 1hpwA 129 8.77e+01 1hpwA d.24.1.1 61118