# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 5.24e-16 2fcfA 103 7.39e-16 2fe5A 94 1.77e-15 1g9oA 91 7.77e-15 1pdr b.36.1.1 60400 1qavA 90 9.45e-15 1qauA b.36.1.1 24777 1tp5A 119 1.21e-14 1q3oA 109 2.79e-14 b.36.1.1 95700 2h2bA 107 6.76e-14 1n7eA 97 1.27e-13 b.36.1.1 91691 1n7fA 97 1.96e-13 b.36.1.1 91692 1ihjA 98 3.17e-13 1pdr b.36.1.1 62382 2f0aA 98 4.16e-13 1kwaA 88 9.60e-13 1kwaA b.36.1.1 24772 1nf3C 128 2.47e-12 b.36.1.1 85596 1wf7A 103 3.53e-12 1qauA 112 3.70e-12 1qauA b.36.1.1 24779 2f5yA 91 4.47e-12 2h3lA 103 4.78e-12 1mfgA 95 8.62e-12 b.36.1.1 79043 1r6jA 82 5.32e-11 b.36.1.1 97151 1fc6A 388 6.11e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 6.54e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.73e-05 1y8tA 324 9.92e-04 1zn8A 180 4.22e-02 1fxlA 167 1.81e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1qb7A 236 4.41e-01 1qb7A c.61.1.1 34087 1h72C 296 8.10e-01 d.14.1.5,d.58.26.1 60712,60713 1bx4A 345 9.63e-01 1bx4A c.72.1.1 34935 1o6dA 163 1.99e+00 c.116.1.3 92567 1r31A 428 2.54e+00 d.58.20.1,d.179.1.1 96897,96898 1vqqA 646 2.84e+00 1x3mA 415 3.52e+00 1cliA 345 3.62e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1zxxA 319 3.75e+00 1rypB 250 3.82e+00 1rypB d.153.1.4 41933 1xv5A 401 3.90e+00 1fr3A 67 3.94e+00 1fr3A b.40.6.1 25436 1jmuB 666 4.46e+00 1wlsA 328 4.46e+00 1mkmA 249 4.83e+00 a.4.5.33,d.110.2.2 79242,79243 1vpqA 273 4.88e+00 1uh5A 329 5.30e+00 c.2.1.2 107840 1se8A 301 5.84e+00 b.40.4.3 105448 1yg9A 330 6.06e+00 1xx6A 191 6.79e+00 2bhoA 130 8.55e+00 2bsyA 278 8.75e+00 1zm8A 259 1.03e+01 1o7fA 469 1.05e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1z8gA 372 1.12e+01 1g2qA 187 1.17e+01 c.61.1.1 65117 1xebA 150 1.18e+01 2bsjA 133 1.18e+01 1o57A 291 1.23e+01 a.4.5.40,c.61.1.1 92483,92484 1ecfA 504 1.23e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1h3gA 601 1.25e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1jalA 363 1.27e+01 c.37.1.8,d.15.10.2 84138,84139 2d4pA 141 1.29e+01 1w78A 422 1.30e+01 1vdmA 153 1.36e+01 1t0hB 224 1.39e+01 c.37.1.1 106208 2gwnA 452 1.42e+01 1o63A 219 1.46e+01 c.94.1.1 92540 2fa1A 160 1.47e+01 1n6aA 259 1.51e+01 b.76.2.1,b.85.7.1 80121,80122 1r62A 160 1.52e+01 d.122.1.3 104816 1cq3A 233 1.54e+01 1cq3A b.27.1.1 23923 1q52A 314 1.54e+01 c.14.1.3 95846 1t6t1 118 1.58e+01 1vchA 175 1.63e+01 1yy6A 155 1.70e+01 1lh0A 213 1.73e+01 c.61.1.1 73896 2f69A 261 1.75e+01 1y791 680 1.80e+01 1y0bA 197 1.81e+01 2g8oA 264 1.82e+01 1lk2B 99 1.84e+01 b.1.1.2 91058 2g8mA 264 1.85e+01 2gm5A 139 1.85e+01 1qqqA 264 1.86e+01 1bkpA d.117.1.1 40931 2a9gA 418 1.89e+01 2az4A 429 1.90e+01 1eu1A 780 2.00e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1fjrA 195 2.01e+01 1fjrA b.102.1.1 59855 1g57A 217 2.02e+01 1g57A d.115.1.2 60253 1htrB 329 2.07e+01 1smrA 1zkpA 268 2.07e+01 1l1qA 186 2.19e+01 c.61.1.1 77653 1fdr 248 2.23e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1a8y 367 2.25e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1i1wA 303 2.27e+01 c.1.8.3 76732 1yloA 348 2.34e+01 2fojA 155 2.35e+01 1uc2A 481 2.40e+01 d.261.1.1 99161 1xtqA 177 2.50e+01 1tzfA 259 2.59e+01 c.68.1.13 107476 2abwA 227 2.59e+01 1j24A 143 2.60e+01 c.52.1.20 84008 1d7oA 297 2.72e+01 1enp c.2.1.2 29907 1mo1A 87 2.74e+01 d.94.1.1 91363 2b8tA 223 2.79e+01 1amm 174 2.96e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1koe 172 2.97e+01 1koe d.169.1.5 42448 2fxqA 264 3.12e+01 1w94A 156 3.24e+01 1eaxA 241 3.25e+01 b.47.1.2 64889 1earA 147 3.36e+01 b.107.1.1,d.58.38.1 64875,64876 2iu4A 336 3.46e+01 1vplA 256 3.47e+01 1ueoA 63 3.47e+01 j.107.1.1 99269 2aamA 309 3.48e+01 1ti6A 875 3.49e+01 b.52.2.2,c.81.1.1 106974,106975 1wl4A 397 3.55e+01 1bu6O 501 3.58e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1zq9A 285 3.59e+01 1l0bA 229 3.63e+01 c.15.1.3,c.15.1.3 73391,73392 2brfA 110 3.63e+01 1ypvA 313 3.72e+01 1rf6A 427 3.73e+01 d.68.2.2 97366 1vj0A 380 3.74e+01 b.35.1.2,c.2.1.1 100786,100787 1a53 247 3.80e+01 1a53 c.1.2.4 28564 2h03A 291 3.81e+01 1fsgA 233 4.00e+01 1qk3A c.61.1.1 34029 1hh1A 143 4.07e+01 1gefA c.52.1.18 61036 1i36A 264 4.10e+01 a.100.1.8,c.2.1.6 71108,71109 1fm0E 150 4.11e+01 1fmaE d.41.5.1 38629 1vkmA 297 4.26e+01 c.138.1.1 108670 2rslA 140 4.27e+01 2rslA c.53.1.1 33345 2evwX 166 4.27e+01 2ckiA 262 4.28e+01 1csh 435 4.37e+01 1csh a.103.1.1 18880 1npuA 117 4.42e+01 b.1.1.1 92038 1d4oA 184 4.45e+01 1d4oA c.31.1.4 31748 1bg4 302 4.49e+01 1taxA c.1.8.3 28806 1g6sA 427 4.51e+01 1eps d.68.2.2 39584 1ta3B 303 4.52e+01 c.1.8.3 106732 1p7tA 731 4.55e+01 c.1.13.1 94319 2fe7A 166 4.55e+01 1l1dA 152 4.61e+01 b.88.1.3 73452 1y7lA 316 4.70e+01 1u9yA 284 4.70e+01 2ghpA 292 4.85e+01 1qgdA 662 4.85e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1f28A 297 4.88e+01 1bkpA d.117.1.1 59608 1hw7A 255 4.93e+01 1i7fA d.193.1.1 61297 2fvgA 340 4.94e+01 1k8qA 377 4.99e+01 c.69.1.6 72177 1xdnA 277 5.00e+01 2bgkA 278 5.01e+01 1wywA 230 5.07e+01 1dmgA 225 5.07e+01 1dmgA c.22.1.1 31036 1yqfA 203 5.12e+01 3gcb 470 5.22e+01 3gcb d.3.1.1 37032 1to2I 64 5.38e+01 2bw3A 534 5.48e+01 2cw8A 537 5.87e+01 2fvtA 135 5.97e+01 2bb3A 221 6.01e+01 1zh5A 195 6.09e+01 1e7uA 961 6.28e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1dkuA 317 6.29e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1cs0A 1073 6.29e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1avaC 181 6.34e+01 1avaC b.42.4.1 25604 1mexH 215 6.41e+01 b.1.1.1,b.1.1.2 91257,91258 2hc1A 291 6.43e+01 1obfO 335 6.50e+01 c.2.1.3,d.81.1.1 86768,86769 1oi7A 288 6.53e+01 c.2.1.8,c.23.4.1 87049,87050 1gpjA 404 6.65e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1rwzA 245 6.89e+01 d.131.1.2,d.131.1.2 98005,98006 1wvqA 167 6.90e+01 1wkyA 464 6.99e+01 1ojhA 65 7.07e+01 a.214.1.1 103976 1g60A 260 7.08e+01 c.66.1.11 70151 1kw4A 89 7.46e+01 a.60.1.2 73077 1h05A 146 7.48e+01 c.23.13.1 76433 1m65A 245 7.53e+01 c.6.3.1 84847 1trb 320 7.55e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1dg6A 191 7.57e+01 1d4vB b.22.1.1 23883 1l5aA 436 7.90e+01 c.43.1.2,c.43.1.2 75923,75924 1n0qA 93 7.91e+01 k.37.1.1 79754 1zpwX 90 7.93e+01 1siqA 392 7.95e+01 a.29.3.1,e.6.1.1 105585,105586 1brt 277 8.02e+01 1brt c.69.1.12 34699 1whmA 92 8.07e+01 1kqpA 271 8.07e+01 c.26.2.1 72883 1u4nA 310 8.10e+01 2anuA 255 8.24e+01 1w99A 558 8.24e+01 1ub3A 220 8.33e+01 c.1.10.1 88395 1eceA 358 8.34e+01 1eceA c.1.8.3 28813 1lvaA 258 8.40e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bs3A 656 8.42e+01 2f9fA 177 8.45e+01 1uthA 315 8.48e+01 c.94.1.1 108032 1mk4A 157 8.50e+01 d.108.1.1 84979 1sw5A 275 8.53e+01 c.94.1.1 106069 1vjyA 303 8.58e+01 d.144.1.7 108633 1zkkA 167 8.59e+01 2a19A 175 8.67e+01 1rypL 212 8.86e+01 d.153.1.4 41880 1ycoA 279 8.88e+01 1z2kA 109 8.90e+01 1gpr 162 8.91e+01 1gpr b.84.3.1 28267 1iieA 75 8.91e+01 1iieA a.109.1.1 19039