# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 1.75e-15 1tp5A 119 8.07e-14 2fe5A 94 8.13e-14 2fcfA 103 1.48e-13 1qavA 90 5.80e-13 1qauA b.36.1.1 24777 1g9oA 91 6.61e-13 1pdr b.36.1.1 60400 2h2bA 107 7.32e-13 1q3oA 109 2.75e-12 b.36.1.1 95700 1n7eA 97 3.32e-12 b.36.1.1 91691 1ihjA 98 6.51e-12 1pdr b.36.1.1 62382 2f0aA 98 8.60e-12 2h3lA 103 1.31e-11 1qauA 112 1.84e-11 1qauA b.36.1.1 24779 1wf7A 103 1.95e-11 1nf3C 128 2.20e-11 b.36.1.1 85596 1n7fA 97 4.60e-11 b.36.1.1 91692 1mfgA 95 5.96e-11 b.36.1.1 79043 1kwaA 88 1.96e-10 1kwaA b.36.1.1 24772 2f5yA 91 3.65e-10 1r6jA 82 1.61e-08 b.36.1.1 97151 1fc6A 388 5.15e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 4.77e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.86e-05 2a6tA 271 1.80e-01 1y8tA 324 1.83e-01 2bh4X 134 4.49e-01 1fxlA 167 3.89e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1jhfA 202 4.03e+00 a.4.5.2,b.87.1.1 63057,63058 1sw5A 275 4.46e+00 c.94.1.1 106069 1x6vA 630 5.28e+00 1mk4A 157 5.38e+00 d.108.1.1 84979 1a8y 367 5.48e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p99A 295 5.94e+00 c.94.1.1 94384 1xebA 150 5.99e+00 1cruA 454 7.22e+00 1c9uA b.68.2.1 27617 1l3iA 192 7.28e+00 c.66.1.22 77676 1bx4A 345 7.74e+00 1bx4A c.72.1.1 34935 1wvqA 167 8.00e+00 1sw5B 275 8.11e+00 c.94.1.1 106070 1j24A 143 8.59e+00 c.52.1.20 84008 1xtmA 175 9.97e+00 1koe 172 1.04e+01 1koe d.169.1.5 42448 2d4pA 141 1.14e+01 1p35A 299 1.14e+01 1p35A b.28.1.1 23925 1t3qB 788 1.23e+01 d.41.1.1,d.133.1.1 106369,106370 1s4iA 175 1.28e+01 1rm6A 769 1.31e+01 1xdyA 298 1.32e+01 2axcA 264 1.38e+01 1rwzA 245 1.41e+01 d.131.1.2,d.131.1.2 98005,98006 1xrsA 516 1.42e+01 1yvcA 70 1.54e+01 1l1dA 152 1.61e+01 b.88.1.3 73452 1nz0A 118 1.63e+01 d.14.1.2 86433 1qo0D 196 1.72e+01 1qo0D c.23.1.3 31125 2bsjA 133 1.77e+01 1npuA 117 1.82e+01 b.1.1.1 92038 2c5qA 240 1.82e+01 1tz9A 367 1.85e+01 c.1.15.6 107466 2bhoA 130 1.93e+01 1dg6A 191 1.93e+01 1d4vB b.22.1.1 23883 1kw4A 89 2.02e+01 a.60.1.2 73077 2brfA 110 2.10e+01 1wqsA 173 2.12e+01 1th7A 81 2.12e+01 1jmuB 666 2.12e+01 1zhvA 134 2.18e+01 1ctqA 166 2.24e+01 1ctqA c.37.1.8 31965 1l2mA 118 2.29e+01 d.89.1.4 77657 1nu4A 97 2.30e+01 d.58.7.1 80731 2evwX 166 2.39e+01 1vpqA 273 2.39e+01 1kgsA 225 2.47e+01 a.4.6.1,c.23.1.1 68596,68597 2h03A 291 2.54e+01 2b4aA 138 2.57e+01 1a8l 226 2.60e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1reqB 637 2.63e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1wdiA 345 2.66e+01 1to2I 64 2.66e+01 1yi9A 309 2.67e+01 2fe7A 166 2.67e+01 1r62A 160 2.69e+01 d.122.1.3 104816 1xewY 172 2.72e+01 1pueE 89 2.72e+01 1awcA a.4.5.21 16165 1o63A 219 2.76e+01 c.94.1.1 92540 1cv8 174 2.79e+01 1cv8 d.3.1.1 37089 1se8A 301 2.79e+01 b.40.4.3 105448 1z1dA 103 2.80e+01 1ti6A 875 2.81e+01 b.52.2.2,c.81.1.1 106974,106975 2rslA 140 2.92e+01 2rslA c.53.1.1 33345 1r61A 207 2.95e+01 c.8.8.1 97138 1jjtA 228 3.11e+01 1a7tA d.157.1.1 63139 2gu3A 136 3.11e+01 1unkA 87 3.13e+01 1cei a.28.2.1 16935 1knb 196 3.30e+01 1qhvA b.21.1.1 23841 1yljA 263 3.31e+01 1r6xA 395 3.35e+01 b.122.1.3,c.26.1.5 97167,97168 2ghpA 292 3.38e+01 1avaC 181 3.43e+01 1avaC b.42.4.1 25604 1s29A 92 3.51e+01 a.4.5.46 98373 1dpe 507 3.66e+01 1dpe c.94.1.1 35799 1xd7A 145 3.74e+01 a.4.5.55 109566 1gky 187 3.80e+01 1gky c.37.1.1 31839 2as0A 396 3.81e+01 1wvhA 134 4.08e+01 1nvmA 345 4.11e+01 a.5.7.1,c.1.10.5 86249,86250 1v66A 65 4.12e+01 1earA 147 4.12e+01 b.107.1.1,d.58.38.1 64875,64876 2fhqA 141 4.16e+01 2hc1A 291 4.27e+01 1em2A 229 4.29e+01 1em2A d.129.3.2 41321 1y7rA 133 4.41e+01 1j1vA 94 4.52e+01 a.4.12.2 83981 1rxwA 336 4.59e+01 a.60.7.1,c.120.1.2 98059,98060 1rypL 212 4.59e+01 d.153.1.4 41880 2cc0A 195 4.77e+01 1h9oA 112 4.78e+01 1qadA d.93.1.1 60837 2fojA 155 4.80e+01 2gm5A 139 4.85e+01 1ww7A 160 4.96e+01 1yy6A 155 5.03e+01 1ql3A 99 5.06e+01 1ycc a.3.1.1 15822 1rtu 114 5.08e+01 9rnt d.1.1.4 36139 1xpjA 126 5.16e+01 1r1qA 100 5.19e+01 d.93.1.1 104763 2cdqA 510 5.30e+01 2fuqA 747 5.42e+01 1ex7A 186 5.42e+01 1gky c.37.1.1 59537 1xjuA 163 5.46e+01 1xo5A 183 5.62e+01 1eo6A 117 5.63e+01 1eo6A d.15.1.3 37609 1zpwX 90 5.71e+01 1pk1B 89 5.73e+01 1mo1A 87 5.85e+01 d.94.1.1 91363 2etxA 209 5.89e+01 1vjyA 303 6.22e+01 d.144.1.7 108633 1y96A 86 6.22e+01 1wy0A 342 6.22e+01 1cq3A 233 6.23e+01 1cq3A b.27.1.1 23923 1o4rA 108 6.30e+01 d.93.1.1 92469 1u2cA 246 6.36e+01 b.1.6.2,d.272.1.1 107610,107611 1jalA 363 6.43e+01 c.37.1.8,d.15.10.2 84138,84139 2covD 104 6.54e+01 1qexA 288 6.58e+01 1qexA b.32.1.1 24425 2bw3A 534 6.63e+01 1ksiA 642 6.71e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1vs0A 310 6.75e+01 1y55X 126 6.80e+01 1cex 214 6.82e+01 1cex c.69.1.30 31285 1h3gA 601 6.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1rxdA 159 6.90e+01 1yllA 200 6.91e+01 1xv5A 401 7.25e+01 1yqfA 203 7.32e+01 1sixA 174 7.36e+01 b.85.4.1 98892 1b43A 340 7.41e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1vlrA 350 7.44e+01 d.13.1.3,d.246.1.1 108860,108861 2bwfA 77 7.55e+01 1rurH 218 7.65e+01 b.1.1.1,b.1.1.2 97879,97880 1xjvA 294 7.71e+01 1cliA 345 7.75e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1o6sB 105 7.76e+01 b.1.6.1 81096 1q8fA 313 8.02e+01 c.70.1.1 96203 1wi0A 113 8.04e+01 1i8fA 81 8.13e+01 1i8fA b.38.1.1 61959 2aa4A 289 8.53e+01 1jy1A 464 8.60e+01 d.136.1.3,d.136.1.3 67438,67439 1mexH 215 8.73e+01 b.1.1.1,b.1.1.2 91257,91258 2bcqA 335 8.78e+01