# List of top-scoring protein chains for T0366.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 2.28e-14 1rgrA 99 1.17e-13 b.36.1.1 104931 1kefA 93 1.70e-13 b.36.1.1 72369 1iu0A 91 2.47e-13 b.36.1.1 83707 1zokA 93 2.72e-13 1um7A 113 3.00e-13 b.36.1.1 99579 1d5gA 96 3.79e-13 b.36.1.1 70080 1tp5A 119 4.35e-13 1vj6A 102 4.38e-13 1be9A 119 5.17e-13 1pdr b.36.1.1 24774 1gm1A 94 7.46e-13 b.36.1.1 70271 2bygA 117 8.01e-13 1wfvA 103 1.22e-12 1wf8A 107 1.68e-12 1pdr 99 2.05e-12 1pdr b.36.1.1 24771 2fcfA 103 2.19e-12 2fe5A 94 2.68e-12 2dazA 124 2.74e-12 1q7xA 108 4.35e-12 b.36.1.1 96059 1uewA 114 5.01e-12 b.36.1.1 99281 1whaA 105 5.05e-12 1ujuA 111 5.85e-12 b.36.1.1 99469 1z87A 263 6.28e-12 2csjA 117 7.24e-12 1x5qA 110 7.43e-12 1i92A 91 9.60e-12 1pdr b.36.1.1 61990 1gq5A 91 1.01e-11 b.36.1.1 76274 1g9oA 91 1.04e-11 1pdr b.36.1.1 60400 1gq4A 90 1.18e-11 b.36.1.1 70340 1qlcA 95 1.20e-11 1qauA b.36.1.1 24776 1qavA 90 1.28e-11 1qauA b.36.1.1 24777 1xz9A 101 1.33e-11 1t2mA 101 1.37e-11 1um1A 110 1.51e-11 b.36.1.1 99578 1uhpA 107 1.66e-11 b.36.1.1 99400 1uezA 101 1.74e-11 b.36.1.1 99286 1oziA 99 1.83e-11 b.36.1.1 93845 1z86A 87 1.88e-11 1uf1A 128 1.91e-11 b.36.1.1 99288 2pdzA 86 2.05e-11 1pdr b.36.1.1 24778 2db5A 128 2.22e-11 1ueqA 123 4.90e-11 b.36.1.1 99271 1wi2A 104 5.67e-11 1ihjA 98 6.78e-11 1pdr b.36.1.1 62382 2h2cA 107 7.15e-11 2h2bA 107 7.15e-11 2d92A 108 7.56e-11 2h3mA 97 1.01e-10 1wg6A 127 1.05e-10 2f0aA 98 1.50e-10 1l6oA 95 1.66e-10 b.36.1.1 84534 1i16 130 1.76e-10 1i16 b.36.1.2 24787 1uepA 103 1.87e-10 b.36.1.1 99270 1n7eA 97 2.45e-10 b.36.1.1 91691 1ry4A 128 2.58e-10 b.36.1.1 98085 1q3oA 109 2.89e-10 b.36.1.1 95700 1b8qA 127 2.94e-10 1qauA b.36.1.1 24781 1v62A 117 3.10e-10 b.36.1.1 108390 1mc7A 95 3.11e-10 b.36.1.1 91241 1qavB 115 4.40e-10 1qauA b.36.1.1 24780 1x5rA 112 4.62e-10 2h3lA 103 4.65e-10 1x6dA 119 4.88e-10 1mfgA 95 5.42e-10 b.36.1.1 79043 2cssA 121 5.68e-10 1x8sA 102 6.02e-10 1qauA 112 6.13e-10 1qauA b.36.1.1 24779 1wh1A 124 6.87e-10 1v5lA 103 7.28e-10 b.36.1.1 108378 1ujdA 117 7.75e-10 b.36.1.1 99454 1rzxA 98 7.86e-10 b.36.1.1 98236 1p1dA 196 8.02e-10 b.36.1.1,b.36.1.1 93896,93897 2cs5A 119 9.16e-10 1va8A 113 1.00e-09 1nf3C 128 1.02e-09 b.36.1.1 85596 1uitA 117 1.04e-09 b.36.1.1 99433 1kwaA 88 1.19e-09 1kwaA b.36.1.1 24772 1vb7A 94 1.59e-09 b.36.1.1 108474 1x5nA 114 1.64e-09 1wfgA 131 1.80e-09 1zubA 114 1.81e-09 1wf7A 103 1.95e-09 1wjlA 90 2.07e-09 1rgwA 85 2.39e-09 b.36.1.1 97455 1v5qA 122 2.90e-09 b.36.1.1 108383 1wi4A 109 2.91e-09 1w9eA 166 3.80e-09 1p1eA 101 4.40e-09 b.36.1.1 93898 1m5zA 91 4.82e-09 b.36.1.1 78676 1whdA 100 8.98e-09 2f5yA 91 9.57e-09 1u3bA 185 2.06e-08 1ujvA 96 4.16e-08 b.36.1.1 99470 1x45A 98 6.11e-08 1u37A 89 6.56e-08 1v6bA 118 6.88e-08 b.36.1.1 108394 1y7nA 90 5.84e-07 1r6jA 82 8.05e-07 b.36.1.1 97151 1u39A 80 8.19e-07 1ufxA 103 1.12e-06 b.36.1.1 99359 1vaeA 111 1.17e-06 b.36.1.1 108466 1obxA 79 1.55e-06 b.36.1.1 86783 1wifA 126 1.85e-06 2d8iA 114 6.56e-05 1fc6A 388 1.13e-03 1fc6A b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 1.55e-03 1fc6A b.36.1.3,c.14.1.2 64742,64743 1lcyA 325 2.15e-03 b.36.1.4,b.47.1.1 73834,73835 1ky9A 448 4.16e-03 b.36.1.4,b.47.1.1 73198,73199 1sotA 320 1.16e-02 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 1.16e-02 b.36.1.4,b.47.1.1 105859,105860 1te0A 318 1.17e-02 2a6tA 271 1.29e+00 1zn8A 180 1.81e+00 1y8tA 324 2.35e+00 1x6vA 630 2.47e+00 1mkmA 249 3.42e+00 a.4.5.33,d.110.2.2 79242,79243 1eaxA 241 4.77e+00 b.47.1.2 64889 2bh4X 134 5.43e+00 2bgvX 134 5.63e+00 1mzvA 235 6.92e+00 c.61.1.1 91502 1ao0A 459 7.11e+00 1ecfB c.61.1.1,d.153.1.1 34049,41816 1gph1 465 7.23e+00 1ecfB 1wmaA 276 1.02e+01 155c 135 1.03e+01 1ycc a.3.1.1 15900 1n5dA 288 1.12e+01 c.2.1.2 80030 2bngA 149 1.21e+01 1qb7A 236 1.23e+01 1qb7A c.61.1.1 34087 1kk1A 410 1.26e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1m54A 363 1.44e+01 c.79.1.1 74463 1jbqA 435 1.74e+01 1oasA c.79.1.1 62850 1cot 129 1.84e+01 1ycc a.3.1.1 15899 1db3A 372 2.00e+01 1db3A c.2.1.2 29813 1kk3A 410 2.03e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1bvwA 360 2.17e+01 1bvwA c.6.1.1 30668 1ocjA 362 2.18e+01 c.6.1.1 86801 1gz1A 362 2.18e+01 c.6.1.1 76405 2bvwA 362 2.19e+01 1bvwA c.6.1.1 30666 1oc7A 364 2.19e+01 c.6.1.1 86794 1jalA 363 2.46e+01 c.37.1.8,d.15.10.2 84138,84139 1wgdA 93 2.54e+01 1fm0E 150 2.56e+01 1fmaE d.41.5.1 38629 1nvjA 140 2.56e+01 d.41.5.1 86243 1vpqA 273 2.65e+01 1yb2A 275 2.85e+01 1kjyB 36 2.85e+01 1tis 286 2.90e+01 1bkpA d.117.1.1 41040 1wkvA 389 2.98e+01 1e6vC 258 3.17e+01 1mroC d.58.31.1 39439 1djpA 330 3.40e+01 4pgaA c.88.1.1 35567 4pgaA 337 3.55e+01 4pgaA c.88.1.1 35565 1sw2A 275 3.67e+01 c.94.1.1 106064 1sw5A 275 3.68e+01 c.94.1.1 106069 1gr0A 367 3.69e+01 c.2.1.3,d.81.1.3 70379,70380 1zz1A 369 3.89e+01 3pga1 337 4.07e+01 4pgaA 1vorL 132 4.07e+01 1lnzA 342 4.27e+01 b.117.1.1,c.37.1.8 78112,78113 1rtwA 220 4.27e+01 a.132.1.3 97823 1nkwI 134 4.29e+01 i.1.1.2 80594 1dms 781 4.30e+01 1dmr b.52.2.2,c.81.1.1 26906,35314 1hzwA 290 4.44e+01 1bkpA d.117.1.1 61464 1hvyA 288 4.44e+01 1bkpA d.117.1.1 41049 1ypvA 313 4.56e+01 1rfmA 344 4.58e+01 c.122.1.1 97385 1ju6A 313 4.61e+01 d.117.1.1 63289 1hw4A 355 4.95e+01 1bkpA d.117.1.1 41054 1mhsA 920 4.96e+01 i.18.1.1 79130 1yg9A 330 5.18e+01 1m3uA 264 5.43e+01 c.1.12.8 84784 2ag0A 563 5.81e+01 1vixA 420 6.24e+01 c.56.5.4,d.58.19.1 100777,100778 1t3qB 788 6.32e+01 d.41.1.1,d.133.1.1 106369,106370 1a6f 119 6.41e+01 1a6f d.14.1.2 37564 1u2wA 122 6.53e+01 1hkvA 453 6.61e+01 b.49.2.3,c.1.6.1 83559,83560 1y56B 382 6.61e+01 2d4pA 141 6.63e+01 1rlyA 60 6.74e+01 g.41.3.1 104988 1f28A 297 6.75e+01 1bkpA d.117.1.1 59608 1ufrA 181 6.76e+01 c.61.1.1 99354 1yzxA 226 6.79e+01 1rlw 126 6.81e+01 1rlw b.7.1.1 23177 1dl6A 58 6.81e+01 1dl6A g.41.3.1 45207 1wscA 230 6.81e+01 1qrtA 553 6.82e+01 1gtrA b.53.1.2,c.26.1.1 26943,31582 1xo5A 183 6.83e+01 1qrsA 553 6.85e+01 1gtrA b.53.1.2,c.26.1.1 26941,31580 1j08A 226 6.88e+01 c.47.1.2,c.47.1.2 83855,83856 1a97A 148 6.95e+01 1nulA c.61.1.1 34023 1al6 437 7.04e+01 1csh a.103.1.1 18885 1a98A 152 7.05e+01 1nulA c.61.1.1 34021 1csh 435 7.06e+01 1csh a.103.1.1 18880 1bci 138 7.07e+01 1rlw b.7.1.1 23180 1nylA 539 7.13e+01 b.53.1.2,c.26.1.1 80741,80742 1qtqA 553 7.53e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1nulA 152 7.54e+01 1nulA c.61.1.1 34011 1x4pA 66 7.57e+01 1oroA 213 7.60e+01 1opr c.61.1.1 34093 1euyA 548 7.60e+01 1gtrA b.53.1.2,c.26.1.1 26945,31584 1o0cA 554 7.60e+01 b.53.1.2,c.26.1.1 86529,86530 2ewpA 226 7.64e+01 1s9pA 227 7.66e+01 a.123.1.1 105384 1kv6A 230 7.70e+01 a.123.1.1 77546 1bx4A 345 7.86e+01 1bx4A c.72.1.1 34935 1tfcA 251 7.92e+01 a.123.1.1 106850 1s9qA 251 7.93e+01 a.123.1.1 105388 2hc1A 291 7.97e+01 2tsrA 307 8.10e+01 1bkpA d.117.1.1 41043 2ftcH 148 8.60e+01 1vjjA 692 8.66e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1rleA 692 8.67e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 97638,97639,97640,97641 2ahsA 295 8.73e+01 1px5A 349 8.73e+01 a.160.1.2,d.218.1.6 95277,95278 1lk2B 99 8.74e+01 b.1.1.2 91058 1rjyB 100 8.82e+01 1r13A 148 8.89e+01 d.169.1.1,h.1.1.1 96782,96783 2bhtA 303 8.97e+01 1vl8A 267 8.98e+01 c.2.1.2 108733