# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 2.51e-14 2fe5A 94 4.08e-14 2fcfA 103 1.10e-13 1tp5A 119 1.37e-13 1be9A 119 1.88e-13 1pdr b.36.1.1 24774 1g9oA 91 2.68e-13 1pdr b.36.1.1 60400 1qavA 90 4.73e-13 1qauA b.36.1.1 24777 2h2bA 107 1.82e-12 2f0aA 98 1.93e-12 1l6oA 95 2.14e-12 b.36.1.1 84534 1n7eA 97 3.10e-12 b.36.1.1 91691 1q3oA 109 4.39e-12 b.36.1.1 95700 1n7fA 97 4.52e-12 b.36.1.1 91692 1ihjA 98 5.35e-12 1pdr b.36.1.1 62382 2h3lA 103 3.67e-11 1kwaA 88 5.17e-11 1kwaA b.36.1.1 24772 1mfgA 95 5.22e-11 b.36.1.1 79043 1wf7A 103 5.33e-11 1nf3C 128 6.59e-11 b.36.1.1 85596 1qauA 112 7.13e-11 1qauA b.36.1.1 24779 2f5yA 91 4.12e-10 1v5lA 103 6.04e-10 b.36.1.1 108378 1nteA 82 1.48e-09 b.36.1.1 86163 1r6jA 82 1.48e-09 b.36.1.1 97151 1fc6A 388 3.00e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.51e-04 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.96e-04 1zn8A 180 9.08e-03 1y8tA 324 1.92e-02 1qb7A 236 1.13e-01 1qb7A c.61.1.1 34087 1sotA 320 2.22e-01 b.36.1.4,b.47.1.1 105852,105853 1fxlA 167 8.35e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1g2qA 187 1.21e+00 c.61.1.1 65117 1fwkA 296 1.59e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1x3mA 415 1.69e+00 1cliA 345 1.82e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1un8A 552 2.14e+00 c.119.1.2,a.208.1.1 103806,99661 1o57A 291 2.23e+00 a.4.5.40,c.61.1.1 92483,92484 1l1qA 186 2.65e+00 c.61.1.1 77653 1w30A 201 2.76e+00 1y0bA 197 4.30e+00 1fsgA 233 4.51e+00 1qk3A c.61.1.1 34029 2f69A 261 4.94e+00 1vdmA 153 5.11e+00 1yg9A 330 5.29e+00 1h72C 296 5.54e+00 d.14.1.5,d.58.26.1 60712,60713 2bw3A 534 5.76e+00 2bhoA 130 6.35e+00 2az4A 429 6.73e+00 1evfA 264 6.91e+00 1bkpA d.117.1.1 40932 1n6aA 259 6.93e+00 b.76.2.1,b.85.7.1 80121,80122 2g8oA 264 7.12e+00 1qqqA 264 7.17e+00 1bkpA d.117.1.1 40931 2g8mA 264 7.39e+00 1mkmA 249 7.47e+00 a.4.5.33,d.110.2.2 79242,79243 1r31A 428 7.81e+00 d.58.20.1,d.179.1.1 96897,96898 1o63A 219 8.80e+00 c.94.1.1 92540 1g57A 217 9.00e+00 1g57A d.115.1.2 60253 2adcA 229 9.64e+00 2bsjA 133 9.86e+00 1u9yA 284 9.89e+00 2fvgA 340 1.05e+01 1jalA 363 1.09e+01 c.37.1.8,d.15.10.2 84138,84139 1q52A 314 1.16e+01 c.14.1.3 95846 1nbwA 607 1.18e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1t6t1 118 1.19e+01 1rypB 250 1.21e+01 1rypB d.153.1.4 41933 1nonA 179 1.23e+01 c.61.1.1 103868 1vchA 175 1.28e+01 2bsyA 278 1.38e+01 1bx4A 345 1.38e+01 1bx4A c.72.1.1 34935 1xv5A 401 1.39e+01 1vj0A 380 1.40e+01 b.35.1.2,c.2.1.1 100786,100787 1i6pA 220 1.43e+01 1ddzA c.53.2.1 61848 1cq3A 233 1.59e+01 1cq3A b.27.1.1 23923 1ad3A 452 1.64e+01 1ad3A c.82.1.1 35335 1db3A 372 1.64e+01 1db3A c.2.1.2 29813 2iu4A 336 1.70e+01 1ueoA 63 1.82e+01 j.107.1.1 99269 1bzyA 217 1.82e+01 1qk3A c.61.1.1 34071 2bshA 125 1.85e+01 1wvcA 259 1.88e+01 1y791 680 1.90e+01 1vpqA 273 1.91e+01 2bh8A 101 1.91e+01 1o6dA 163 1.97e+01 c.116.1.3 92567 2bnjA 303 2.03e+01 1opr 213 2.04e+01 1opr c.61.1.1 34091 1tzfA 259 2.06e+01 c.68.1.13 107476 1gjjA 168 2.06e+01 a.140.1.1,a.140.1.1 83291,83292 1xznA 179 2.08e+01 1uh5A 329 2.14e+01 c.2.1.2 107840 1rl2A 137 2.16e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1ecfA 504 2.20e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1xx6A 191 2.22e+01 2b4aA 138 2.32e+01 1rovA 857 2.41e+01 a.119.1.1,b.12.1.1 97674,97675 1hvyA 288 2.46e+01 1bkpA d.117.1.1 41049 1w78A 422 2.57e+01 1wkyA 464 2.62e+01 1eaxA 241 2.63e+01 b.47.1.2 64889 1lw6I 64 2.66e+01 d.40.1.1 74294 1zm8A 259 2.71e+01 1oroA 213 2.78e+01 1opr c.61.1.1 34093 1l0bA 229 2.83e+01 c.15.1.3,c.15.1.3 73391,73392 1i1wA 303 2.86e+01 c.1.8.3 76732 1kcbA 340 2.88e+01 b.6.1.3,b.6.1.3 90951,90952 2cwaA 263 3.07e+01 1yjmA 110 3.07e+01 1h70A 255 3.10e+01 1h70A d.126.1.3 60711 1lh0A 213 3.10e+01 c.61.1.1 73896 1vzoA 355 3.31e+01 d.144.1.7 108971 1to2I 64 3.46e+01 1zq1C 633 3.48e+01 1wd5A 208 3.51e+01 1a79A 171 3.52e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2gm5A 139 3.53e+01 1fdr 248 3.57e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1u4nA 310 3.71e+01 1rurH 218 3.73e+01 b.1.1.1,b.1.1.2 97879,97880 1dmgA 225 3.74e+01 1dmgA c.22.1.1 31036 1rpxA 230 3.86e+01 1rpxA c.1.2.2 28536 4gcr 174 3.86e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1earA 147 3.97e+01 b.107.1.1,d.58.38.1 64875,64876 2bw4A 340 3.99e+01 1amm 174 4.00e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1u3oA 82 4.01e+01 1rf6A 427 4.04e+01 d.68.2.2 97366 1wtaA 275 4.09e+01 1avaC 181 4.15e+01 1avaC b.42.4.1 25604 1yioA 208 4.21e+01 1r13A 148 4.30e+01 d.169.1.1,h.1.1.1 96782,96783 1ypvA 313 4.32e+01 1ltlA 279 4.32e+01 b.40.4.11 84701 1o5oA 221 4.36e+01 c.61.1.1 92509 1hgxA 183 4.39e+01 1tc1A c.61.1.1 34027 1yloA 348 4.39e+01 1j9qA 341 4.40e+01 1nif b.6.1.3,b.6.1.3 62765,62766 1x65A 89 4.41e+01 1fr3A 67 4.42e+01 1fr3A b.40.6.1 25436 1zxxA 319 4.47e+01 1d8cA 723 4.48e+01 1d8cA c.1.13.1 29325 1vqqA 646 4.51e+01 2d4pA 141 4.56e+01 1j5pA 253 4.58e+01 d.81.1.3,c.2.1.3 71577,83092 1p7tA 731 4.60e+01 c.1.13.1 94319 2anuA 255 4.77e+01 1zsyA 357 4.79e+01 1nif 340 4.85e+01 1nif b.6.1.3,b.6.1.3 23048,23049 2aeeA 211 4.92e+01 1st0A 337 4.92e+01 d.13.1.3,d.246.1.1 98979,98980 1wlsA 328 5.18e+01 1evhA 112 5.24e+01 1evhA b.55.1.4 26997 1yqfA 203 5.32e+01 1i52A 236 5.33e+01 1i52A c.68.1.13 61767 2fvtA 135 5.35e+01 1eo6A 117 5.38e+01 1eo6A d.15.1.3 37609 1l7bA 92 5.45e+01 c.15.1.2 91053 1wnfA 328 5.48e+01 1pz7A 204 5.49e+01 b.29.1.4 95405 1fzoB 99 5.50e+01 1agdB b.1.1.2 60157 1lk2B 99 5.50e+01 b.1.1.2 91058 1p42A 270 5.52e+01 d.14.1.7,d.14.1.7 87754,87755 1a8vA 121 5.54e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1vkpA 383 5.56e+01 d.126.1.6 108686 1gg6B 131 5.57e+01 5ptp 1llnA 262 5.57e+01 d.165.1.1 84625 1js8A 394 5.61e+01 a.86.1.1,b.112.1.1 67219,67220 2affA 120 5.64e+01 1q3iA 214 5.67e+01 d.220.1.1 104524 1xo3A 101 5.67e+01 1ti6A 875 5.77e+01 b.52.2.2,c.81.1.1 106974,106975 1yphC 131 5.80e+01 1yb3A 175 5.80e+01 1uylA 236 5.89e+01 d.122.1.1 108147 1kk1A 410 6.00e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1uacL 107 6.02e+01 b.1.1.1 99133 2a2pA 129 6.04e+01 1o3yA 166 6.19e+01 c.37.1.8 86618 1d7oA 297 6.21e+01 1enp c.2.1.2 29907 1jmuB 666 6.22e+01 2fxqA 264 6.26e+01 1oi2A 366 6.28e+01 c.119.1.2 103802 1bg4 302 6.29e+01 1taxA c.1.8.3 28806 1ycoA 279 6.38e+01 1cl1A 395 6.42e+01 1cl2A c.67.1.3 34395 2ghpA 292 6.42e+01 1hw7A 255 6.45e+01 1i7fA d.193.1.1 61297 1th0A 226 6.73e+01 d.3.1.7 106903 1yy6A 155 6.77e+01 2fojA 155 6.77e+01 1a62 130 6.79e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1cg2A 393 6.81e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 2ckiA 262 6.82e+01 1ta3B 303 6.85e+01 c.1.8.3 106732 1k8mA 93 6.89e+01 b.84.1.1 68314 1fxrA 64 6.92e+01 1fxd d.58.1.4 38993 1h3gA 601 6.96e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1xtqA 177 7.02e+01 2agcA 162 7.02e+01 1fzkB 99 7.12e+01 1agdB b.1.1.2 60151 2d9iA 96 7.18e+01 1py5A 326 7.23e+01 d.144.1.7 104389 1gv3A 248 7.30e+01 a.2.11.1,d.44.1.1 70585,70586 1xdnA 277 7.41e+01 1qgdA 662 7.46e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1g7jB 116 7.48e+01 1f3rB b.1.1.1 19933 2gwnA 452 7.53e+01 1kshA 186 7.53e+01 c.37.1.8 72914 1o12A 376 7.59e+01 b.92.1.5,c.1.9.10 80758,80759 1a2yB 116 7.59e+01 1gc1H b.1.1.1 19927 3gcb 470 7.61e+01 3gcb d.3.1.1 37032 1yezA 68 7.63e+01 1vraA 208 7.69e+01 1enp 312 7.70e+01 1enp c.2.1.2 29906 3aprE 325 7.72e+01 2er7E b.50.1.2 26820 2apr 325 7.75e+01 2er7E b.50.1.2 26819 1se8A 301 7.77e+01 b.40.4.3 105448 1ys7A 233 7.84e+01 2c5qA 240 7.95e+01 1hh1A 143 8.02e+01 1gefA c.52.1.18 61036 1vheA 373 8.04e+01 b.49.3.1,c.56.5.4 100669,100670 1qzzA 374 8.16e+01 a.4.5.29,c.66.1.12 96719,96720 1p2fA 220 8.20e+01 a.4.6.1,c.23.1.1 87720,87721 1dkuA 317 8.24e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1cjbA 231 8.30e+01 1qk3A c.61.1.1 34079 1z08A 170 8.34e+01 1uheA 97 8.40e+01 1ebfA 358 8.42e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1mexH 215 8.62e+01 b.1.1.1,b.1.1.2 91257,91258 1zkpA 268 8.87e+01