# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 8.18e-15 2fcfA 103 1.74e-14 2fe5A 94 1.84e-14 1tp5A 119 3.65e-14 1be9A 119 4.30e-14 1pdr b.36.1.1 24774 1qavA 90 9.24e-14 1qauA b.36.1.1 24777 1g9oA 91 1.02e-13 1pdr b.36.1.1 60400 2h2bA 107 5.21e-13 1n7eA 97 1.05e-12 b.36.1.1 91691 1q3oA 109 1.14e-12 b.36.1.1 95700 1l6oA 95 1.19e-12 b.36.1.1 84534 1ihjA 98 1.36e-12 1pdr b.36.1.1 62382 1n7fA 97 1.99e-12 b.36.1.1 91692 2f0aA 98 3.92e-12 1nf3C 128 1.48e-11 b.36.1.1 85596 1kwaA 88 1.90e-11 1kwaA b.36.1.1 24772 2h3lA 103 2.52e-11 1mfgA 95 3.76e-11 b.36.1.1 79043 1wf7A 103 4.52e-11 1qauA 112 5.67e-11 1qauA b.36.1.1 24779 2f5yA 91 1.58e-10 1v5lA 103 1.77e-10 b.36.1.1 108378 1nteA 82 1.72e-09 b.36.1.1 86163 1r6jA 82 1.72e-09 b.36.1.1 97151 1fc6A 388 3.93e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 9.47e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 4.23e-04 1sotA 320 9.83e-03 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 1.15e-02 1zn8A 180 2.78e-02 1fxlA 167 3.04e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1qb7A 236 6.10e-01 1qb7A c.61.1.1 34087 1fwkA 296 1.64e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1h72C 296 2.21e+00 d.14.1.5,d.58.26.1 60712,60713 1cliA 345 2.57e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1rypB 250 4.17e+00 1rypB d.153.1.4 41933 1ad3A 452 4.61e+00 1ad3A c.82.1.1 35335 1x3mA 415 5.45e+00 1r31A 428 5.63e+00 d.58.20.1,d.179.1.1 96897,96898 1bx4A 345 5.92e+00 1bx4A c.72.1.1 34935 1o6dA 163 5.93e+00 c.116.1.3 92567 1o63A 219 6.39e+00 c.94.1.1 92540 1un8A 552 6.68e+00 c.119.1.2,a.208.1.1 103806,99661 1z8gA 372 7.75e+00 1mkmA 249 7.75e+00 a.4.5.33,d.110.2.2 79242,79243 1uh5A 329 8.58e+00 c.2.1.2 107840 2bsyA 278 8.72e+00 1xv5A 401 9.35e+00 1vpqA 273 9.36e+00 1vdmA 153 9.51e+00 1g2qA 187 1.02e+01 c.61.1.1 65117 1cq3A 233 1.03e+01 1cq3A b.27.1.1 23923 1se8A 301 1.04e+01 b.40.4.3 105448 1xx6A 191 1.14e+01 1yg9A 330 1.15e+01 1db3A 372 1.31e+01 1db3A c.2.1.2 29813 1q52A 314 1.36e+01 c.14.1.3 95846 2gwnA 452 1.38e+01 1htrB 329 1.49e+01 1smrA 2fvgA 340 1.50e+01 1wnfA 328 1.52e+01 2bhoA 130 1.52e+01 1a44 185 1.54e+01 1a44 b.17.1.1 23704 1jmuB 666 1.55e+01 1wlsA 328 1.58e+01 1fzkB 99 1.64e+01 1agdB b.1.1.2 60151 1fzoB 99 1.64e+01 1agdB b.1.1.2 60157 1lk2B 99 1.64e+01 b.1.1.2 91058 2az4A 429 1.84e+01 1y791 680 1.89e+01 1zxxA 319 1.91e+01 1rpxA 230 1.95e+01 1rpxA c.1.2.2 28536 1vqqA 646 1.96e+01 2d4pA 141 1.98e+01 2bsjA 133 1.98e+01 1n6aA 259 2.04e+01 b.76.2.1,b.85.7.1 80121,80122 1lnzA 342 2.05e+01 b.117.1.1,c.37.1.8 78112,78113 1fsgA 233 2.06e+01 1qk3A c.61.1.1 34029 1q3iA 214 2.15e+01 d.220.1.1 104524 2bshA 125 2.16e+01 1fr3A 67 2.20e+01 1fr3A b.40.6.1 25436 2fvtA 135 2.36e+01 1h3gA 601 2.37e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1evfA 264 2.41e+01 1bkpA d.117.1.1 40932 1o57A 291 2.41e+01 a.4.5.40,c.61.1.1 92483,92484 1o7fA 469 2.49e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2g8oA 264 2.61e+01 1qqqA 264 2.65e+01 1bkpA d.117.1.1 40931 2f69A 261 2.67e+01 1w30A 201 2.68e+01 2g8mA 264 2.70e+01 1wkyA 464 2.71e+01 1rxxA 421 2.71e+01 d.126.1.4 98061 1ecfA 504 2.76e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1g57A 217 2.79e+01 1g57A d.115.1.2 60253 2aamA 309 2.81e+01 1l1qA 186 2.90e+01 c.61.1.1 77653 1y0bA 197 2.97e+01 1cjbA 231 3.00e+01 1qk3A c.61.1.1 34079 1jalA 363 3.05e+01 c.37.1.8,d.15.10.2 84138,84139 1ueoA 63 3.11e+01 j.107.1.1 99269 1u9yA 284 3.15e+01 1a4yA 460 3.19e+01 1a4yA c.10.1.1 30852 1uc2A 481 3.27e+01 d.261.1.1 99161 1tzfA 259 3.29e+01 c.68.1.13 107476 1amm 174 3.30e+01 1amm b.11.1.1,b.11.1.1 23587,23588 4gcr 174 3.30e+01 1amm b.11.1.1,b.11.1.1 23589,23590 2cwaA 263 3.31e+01 2fxqA 264 3.36e+01 1w78A 422 3.40e+01 1rovA 857 3.58e+01 a.119.1.1,b.12.1.1 97674,97675 1xmrA 243 3.75e+01 1csh 435 3.80e+01 1csh a.103.1.1 18880 1hvyA 288 3.94e+01 1bkpA d.117.1.1 41049 2adcA 229 4.07e+01 1fx3A 169 4.07e+01 1fx3B d.33.1.1 38524 1rypL 212 4.09e+01 d.153.1.4 41880 1opr 213 4.17e+01 1opr c.61.1.1 34091 1zm8A 259 4.18e+01 1r13A 148 4.19e+01 d.169.1.1,h.1.1.1 96782,96783 1vchA 175 4.23e+01 1fjrA 195 4.30e+01 1fjrA b.102.1.1 59855 2brfA 110 4.31e+01 1eaxA 241 4.45e+01 b.47.1.2 64889 2f9fA 177 4.46e+01 1yy6A 155 4.52e+01 1yloA 348 4.61e+01 1xebA 150 4.68e+01 1fdr 248 4.69e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1w94A 156 4.72e+01 1d7oA 297 4.76e+01 1enp c.2.1.2 29907 1t6t1 118 4.85e+01 1enp 312 4.94e+01 1enp c.2.1.2 29906 2bw3A 534 4.96e+01 1lh0A 213 5.01e+01 c.61.1.1 73896 1ti6A 875 5.08e+01 b.52.2.2,c.81.1.1 106974,106975 1a8y 367 5.17e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1r62A 160 5.20e+01 d.122.1.3 104816 1xdnA 277 5.25e+01 2fe7A 166 5.33e+01 1urnA 97 5.35e+01 1urnA d.58.7.1 39153 1behA 187 5.37e+01 1a44 b.17.1.1 23700 1to2I 64 5.49e+01 1lw6I 64 5.49e+01 d.40.1.1 74294 1gg6B 131 5.55e+01 5ptp 2bnjA 303 5.59e+01 1j24A 143 5.64e+01 c.52.1.20 84008 2b8tA 223 5.70e+01 1kk1A 410 5.75e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1bu6O 501 5.79e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1dg6A 191 5.82e+01 1d4vB b.22.1.1 23883 2ckiA 262 5.89e+01 1whmA 92 5.92e+01 1yjmA 110 5.94e+01 2fojA 155 5.98e+01 1zkpA 268 6.04e+01 1p7tA 731 6.14e+01 c.1.13.1 94319 1eu1A 780 6.16e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1fm0E 150 6.19e+01 1fmaE d.41.5.1 38629 2iu4A 336 6.22e+01 1koe 172 6.30e+01 1koe d.169.1.5 42448 1h65A 270 6.35e+01 c.37.1.8 65640 2anuA 255 6.49e+01 1zkkA 167 6.54e+01 1rl2A 137 6.58e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1pz7A 204 6.78e+01 b.29.1.4 95405 2f9dA 125 6.85e+01 1dmgA 225 6.86e+01 1dmgA c.22.1.1 31036 1g60A 260 6.99e+01 c.66.1.11 70151 1gpjA 404 7.21e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1o12A 376 7.26e+01 b.92.1.5,c.1.9.10 80758,80759 2gm5A 139 7.31e+01 1ys7A 233 7.37e+01 2bb3A 221 7.41e+01 1obfO 335 7.45e+01 c.2.1.3,d.81.1.1 86768,86769 1cozA 129 7.54e+01 1cozA c.26.1.2 31598 1pjzA 203 7.56e+01 c.66.1.36 94794 1xznA 179 7.68e+01 1pu5A 164 7.69e+01 b.95.1.1 104310 1vj0A 380 7.79e+01 b.35.1.2,c.2.1.1 100786,100787 1qgdA 662 7.80e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1jv2B 692 7.84e+01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 1vraB 215 7.88e+01 1yqfA 203 7.91e+01 1wvqA 167 8.02e+01 2cw8A 537 8.07e+01 2affA 120 8.07e+01 1yb3A 175 8.09e+01 1l1dA 152 8.09e+01 b.88.1.3 73452 1zq9A 285 8.23e+01 2agcA 162 8.24e+01 1hw7A 255 8.28e+01 1i7fA d.193.1.1 61297 1eo6A 117 8.35e+01 1eo6A d.15.1.3 37609 2h03A 291 8.38e+01 2f4wA 187 8.41e+01 1uthA 315 8.42e+01 c.94.1.1 108032 1sw5A 275 8.47e+01 c.94.1.1 106069 1zwxA 301 8.55e+01 1d4oA 184 8.70e+01 1d4oA c.31.1.4 31748 1f28A 297 8.73e+01 1bkpA d.117.1.1 59608 2f1wA 158 8.79e+01 1ub3A 220 8.81e+01 c.1.10.1 88395 1r4aA 165 8.83e+01 c.37.1.8 96986 1l0bA 229 8.83e+01 c.15.1.3,c.15.1.3 73391,73392 2a9gA 418 8.94e+01 1g6sA 427 8.95e+01 1eps d.68.2.2 39584