CreatePredAlphaCost pred_alpha2k alpha11 T0365.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0365.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0365.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 50 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from T0365.dssp-ehl2.constraints HelixConstraint I15 I40 7.516 HelixConstraint W44 T71 6.331 HelixConstraint R82 I107 6.088 HelixConstraint Q115 E147 6.675 HelixConstraint E154 A185 7.168 HelixConstraint P192 A224 6.176 # hand constraints from top alignment Constraint L219.CB V138.CB -10 4.4 7.0 0.5 Constraint L219.CB I139.CB -10 4.7 8.0 0.5 Constraint V215.CB A135.CB -10 3.8 7.0 0.5 Constraint E213.CB M161.CB -10 5.2 8.0 0.5 Constraint A209.CB I168.CB -10 4.2 7.0 0.5 Constraint A209.CB A131.CB -10 5.5 8.0 0.5 Constraint A209.CB L165.CB -10 5.5 8.0 0.5 Constraint P114.CB D194.CB -10 3.8 7.0 0.5 Constraint P114.CB V195.CB -10 6.4 9.0 0.5 Constraint P120.CB L175.CB -10 4.9 8.0 0.5 Constraint L134.CB M161.CB -10 6.0 9.0 0.5 Constraint V33.CB V132.CB -10 5.1 8.0 0.5 Constraint L88.CB I139.CB -10 6.1 9.0 0.5