CreatePredAlphaCost pred_alpha2k alpha11 T0365.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0365.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0365.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 15 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 \
	maybe_metal 0.5 \
	maybe_ssbond 1

// remove maybe_ssbond weight if protein known to be in reducing environment.
// remove maybe_metal weight if protein known to have disulfides or
//	known not to bind metal ions.

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

include T0365.t2k.dssp-ehl2.constraints
// include T0365.undertaker-align.sheets
// include culled rr.t2k.constraints
Constraint A96.CB L208.CB -10. 7.0 14.0 0.581746351925
Constraint M78.CB I202.CB -10. 7.0 14.0 0.526920474913
Constraint I139.CB L179.CB -10. 7.0 14.0 0.441016781963 bonus
Constraint I54.CB L85.CB -10. 7.0 14.0 0.372859926316 bonus
Constraint L165.CB L208.CB -10. 7.0 14.0 0.364571928571 bonus
Constraint I139.CB M161.CB -10. 7.0 14.0 0.347484215592 bonus
Constraint I54.CB I95.CB -10. 7.0 14.0 0.337033377871 bonus
Constraint I162.CB V195.CB -10. 7.0 14.0 0.303515752116 bonus
Constraint I139.CB V158.CB -10. 7.0 14.0 0.301077258599 bonus