# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 1.54e-04 a.7.12.1 106025 1xwmA 217 4.67e-03 1vctA 205 3.65e-01 1wkbA 810 9.98e-01 1urvA 190 1.09e+00 1ut0A 190 1.09e+00 a.1.1.2 108012 1xqrA 296 1.18e+00 2dc3A 193 1.56e+00 1xqsA 280 1.62e+00 1ofcX 304 2.00e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1ithA 141 2.76e+00 1ithA a.1.1.2 15623 2ligA 164 2.86e+00 1vls a.24.2.1 16530 1n81A 186 2.87e+00 a.185.1.1 85388 1jk0A 419 3.61e+00 a.25.1.2 63142 1pk5A 248 4.52e+00 a.123.1.1 88139 1tffA 234 4.53e+00 d.3.1.11 106854 1oq9A 363 5.18e+00 a.25.1.2 87257 1vljA 407 5.43e+00 e.22.1.2 108832 1afrA 345 5.92e+00 1afrA a.25.1.2 16805 1kgnA 329 6.37e+00 a.25.1.2 68584 1i50A 1733 6.52e+00 e.29.1.2 61754 2ah6A 208 7.08e+00 2b05A 246 7.23e+00 1np3A 338 8.04e+00 a.100.1.2,c.2.1.6 85946,85947 1woyA 500 8.64e+00 2g38A 99 8.86e+00 1w9cA 321 9.41e+00 1k6xA 352 1.09e+01 c.2.1.2 68238 1k6iA 352 1.13e+01 c.2.1.2 68223 1hx1B 114 1.16e+01 1hx1B a.7.7.1 61350 2fcjA 119 1.21e+01 1mroA 548 1.25e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 1mtyB 384 1.26e+01 1mtyB a.25.1.2 16740 1brd 248 1.31e+01 1c3wA f.13.1.1 43404 1xgkA 352 1.32e+01 1a8h 500 1.33e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1vj7A 393 1.34e+01 a.211.1.1,d.218.1.8 100801,100802 1twfA 1733 1.34e+01 2db0A 253 1.37e+01 1j1vA 94 1.38e+01 a.4.12.2 83981 1ouvA 273 1.40e+01 a.118.18.1 93570 1xlyA 234 1.44e+01 1eumA 165 1.52e+01 1eumA a.25.1.1 59507 1hbnA 549 1.52e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 2br9A 234 1.65e+01 2c6cA 707 1.66e+01 1dowA 205 1.71e+01 1dovA a.24.9.1 16626 2gmyA 153 1.83e+01 1fz1C 389 1.93e+01 1mtyB a.25.1.2 16746 1ylmA 144 1.95e+01 1n6bA 473 1.96e+01 a.104.1.1 85359 1r2fA 319 2.01e+01 1r2fA a.25.1.2 16800 1wqgA 185 2.09e+01 1sgmA 191 2.13e+01 a.4.1.9,a.121.1.1 105537,105538 1us6A 102 2.14e+01 a.2.13.1 107999 1wphA 201 2.34e+01 1po5A 476 2.41e+01 a.104.1.1 94963 1vjlA 164 2.56e+01 d.257.1.1 100822 1jq0A 84 2.69e+01 h.3.2.1 71786 1l2iA 261 2.69e+01 a.123.1.1 73503 2fnoA 248 2.71e+01 1dxrM 323 2.76e+01 6prcM f.26.1.1 43432 1nr6A 473 2.78e+01 a.104.1.1 92085 2bk9A 153 2.83e+01 1aep 161 2.89e+01 1aep a.63.1.1 18139 1vgmA 378 2.94e+01 1pf4A 582 2.97e+01 c.37.1.12,f.37.1.1 88052,88053 1iqcA 308 3.06e+01 a.3.1.5,a.3.1.5 66266,66267 1v4xB 146 3.07e+01 a.1.1.2 108364 1vcsA 102 3.17e+01 1z1lA 345 3.18e+01 1rfzA 168 3.25e+01 a.195.1.1 97411 1orjA 130 3.31e+01 a.24.19.1 93456 1g2cL 43 3.34e+01 1g2cL 1r9dA 787 3.40e+01 c.7.1.1 104865 1l4aD 87 3.53e+01 h.1.15.1 73562 6prcM 323 3.55e+01 6prcM f.26.1.1 43435 2awiA 317 3.58e+01 1ku1A 230 3.62e+01 a.118.3.1 72996 1zgmA 248 3.78e+01 1yucA 255 3.80e+01 1z72A 225 3.80e+01 1wcrA 103 3.82e+01 1rfyA 102 3.84e+01 1t33A 224 3.99e+01 a.4.1.9,a.121.1.1 106295,106296 2cfuA 658 4.05e+01 1dt6A 473 4.07e+01 1dt6A a.104.1.1 18977 2erbA 125 4.09e+01 2es4D 332 4.12e+01 1g2cB 43 4.18e+01 1g2cB 1vls 146 4.37e+01 1vls a.24.2.1 16532 1hs6A 611 4.47e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1s4bP 674 4.52e+01 d.92.1.5 105252 1ltm 320 4.54e+01 1ltm d.2.1.6 36992 1tqgA 105 4.59e+01 a.24.10.3 107224 1m93A 55 4.69e+01 e.1.1.1 91235 1bvsB 203 4.90e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16281,17956,25275 1un8A 552 4.91e+01 c.119.1.2,a.208.1.1 103806,99661 1qkmA 255 4.98e+01 3erdA a.123.1.1 19309 1aijS 301 4.99e+01 6prcM f.26.1.1 43465 1aijM 307 4.99e+01 6prcM f.26.1.1 43462 1y8aA 332 5.05e+01 1o5hA 214 5.05e+01 a.191.1.1 92497 1x42A 232 5.06e+01 2ayuA 417 5.09e+01 1oshA 232 5.25e+01 a.123.1.1 93496 1qsaA 618 5.26e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1ialA 453 5.31e+01 1bk5A a.118.1.1 19116 1mgtA 174 5.32e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1bcfA 158 5.34e+01 1bcfA a.25.1.1 16648 1r9jA 673 5.39e+01 1uhnA 189 5.46e+01 a.39.1.5 99399 1cojA 212 5.52e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1qusA 322 5.63e+01 1ltm d.2.1.6 36991 1gtmA 419 5.78e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1i4sA 147 5.86e+01 a.149.1.1 66026 2a5kA 307 5.87e+01 2bs3C 256 5.89e+01 1wmuB 146 5.90e+01 a.1.1.2 109417 1ir6A 424 5.98e+01 c.107.1.2 71342 2gsvA 80 6.21e+01 1e2xA 243 6.21e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 2amdA 311 6.29e+01 1x0vA 354 6.31e+01 1sfcE 96 6.43e+01 1sfcE h.1.15.1 45647 1f44A 324 6.49e+01 a.60.9.1,d.163.1.1 64982,64983 1i1iP 681 6.60e+01 1i1iP d.92.1.5 40297 1rzhM 307 6.75e+01 f.26.1.1 98165 1ymtA 246 6.80e+01 1sly 618 6.86e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1cg7A 93 6.88e+01 1cktA a.21.1.1 16428 1iygA 133 6.88e+01 a.118.8.1 76947 1wy0A 342 6.98e+01 1dovA 181 7.07e+01 1dovA a.24.9.1 16627 1z6oM 191 7.09e+01 1in6A 334 7.14e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1f5qB 252 7.20e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1wzdA 215 7.21e+01 1qgtA 149 7.25e+01 1qgtA a.62.1.1 18135 2fupA 168 7.27e+01 1n4kA 381 7.28e+01 a.118.22.1,b.42.6.1 79992,79993 1ka2A 499 7.30e+01 d.92.1.5 77305 1m98A 317 7.32e+01 a.175.1.1,d.17.4.6 78866,78867 1wleA 501 7.33e+01 1lvl 458 7.34e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1vg5A 73 7.37e+01 1keaA 221 7.38e+01 a.96.1.2 68491 1eqfA 280 7.40e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1n97A 389 7.58e+01 a.104.1.1 80335 1gaxA 862 7.62e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1i6zA 135 7.62e+01 a.7.7.1 61861 1u61A 138 7.66e+01 a.149.1.1 107696 1ohfA 644 7.66e+01 b.121.4.8 93014 1txuA 273 7.68e+01 a.222.1.1 107439 1qlaC 256 7.69e+01 1qlaC f.21.2.1 43722 1kbuA 349 7.72e+01 a.60.9.1,d.163.1.1 72284,72285 2g40A 224 7.75e+01 1yg2A 179 7.84e+01 1iqpA 327 7.86e+01 a.80.1.1,c.37.1.20 62649,62650 1go3F 107 8.02e+01 a.60.8.2 65407 1h3lA 87 8.17e+01 a.177.1.1 76639 1hiwA 133 8.34e+01 1hiwA a.61.1.1 18122 1yozA 116 8.35e+01 1ao6A 585 8.39e+01 1bj5 a.126.1.1,a.126.1.1,a.126.1.1 19354,19355,19356 1zejA 293 8.39e+01 1ys7A 233 8.46e+01 1wrdA 103 8.50e+01 1w2yA 229 8.64e+01 a.204.1.1 109140 1qdbA 473 8.68e+01 1qdbA a.138.1.3 19688 1sfcA 96 8.76e+01 1sfcA h.1.15.1 45643 1q2wA 308 8.77e+01 b.47.1.4 88355 1mw9X 592 8.78e+01 e.10.1.1 91480 3hmgB 175 8.91e+01 1hgeB h.3.1.1 45704 2viuB 175 8.92e+01 1hgeB h.3.1.1 45676 1hgeB 175 8.94e+01 1hgeB h.3.1.1 45680